Wall clock time and date at job start Wed Apr 1 2020 02:59:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86803 * 120.00222 * 2 1
4 4 H 1.48495 * 109.47082 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46741 * 300.00435 * 3 2 1
6 6 H 1.48494 * 109.46699 * 60.00341 * 3 2 1
7 7 C 1.37879 * 120.00121 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00349 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99757 * 359.97438 * 7 2 1
10 10 C 1.53498 * 114.20717 * 180.02562 * 9 7 2
11 11 N 1.47071 * 87.98290 * 220.34287 * 10 9 7
12 12 S 1.65598 * 136.05279 * 207.08088 * 11 10 9
13 13 O 1.42103 * 106.40800 * 336.46024 * 12 11 10
14 14 O 1.42097 * 106.40165 * 203.53803 * 12 11 10
15 15 C 1.76208 * 107.21950 * 90.00061 * 12 11 10
16 16 C 1.38246 * 119.98749 * 89.99278 * 15 12 11
17 17 C 1.38215 * 120.00664 * 180.02562 * 16 15 12
18 18 C 1.38330 * 119.99152 * 359.97438 * 17 16 15
19 19 Br 1.89100 * 120.00875 * 179.97438 * 18 17 16
20 20 C 1.38320 * 119.97711 * 0.27274 * 18 17 16
21 21 C 1.38218 * 119.99430 * 359.46849 * 20 18 17
22 22 C 1.47067 * 87.88672 * 27.33899 * 11 10 9
23 23 H 0.96999 * 120.00305 * 0.02562 * 1 2 3
24 24 H 1.09005 * 113.28122 * 313.06565 * 9 7 2
25 25 H 1.08997 * 113.47012 * 105.56177 * 10 9 7
26 26 H 1.09003 * 113.46583 * 335.11733 * 10 9 7
27 27 H 1.07998 * 119.99777 * 0.02754 * 16 15 12
28 28 H 1.07998 * 120.00665 * 180.02562 * 17 16 15
29 29 H 1.08005 * 120.00516 * 179.70850 * 20 18 17
30 30 H 1.07997 * 120.00216 * 180.27935 * 21 20 18
31 31 H 1.08994 * 113.46500 * 87.43818 * 22 11 10
32 32 H 1.09002 * 113.46626 * 217.87876 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8904 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.1487 -3.7442 -0.0005
11 7 1.2097 -4.3574 -0.9520
12 16 0.7496 -5.8981 -1.3479
13 8 1.8215 -6.7484 -0.9639
14 8 0.2426 -5.8372 -2.6740
15 6 -0.6134 -6.3177 -0.3130
16 6 -1.9043 -6.0456 -0.7264
17 6 -2.9737 -6.3740 0.0853
18 6 -2.7523 -6.9755 1.3112
19 35 -4.2150 -7.4243 2.4224
20 6 -1.4602 -7.2428 1.7265
21 6 -0.3916 -6.9189 0.9119
22 6 0.8641 -3.0005 -1.4016
23 1 -0.4850 0.8400 -0.0004
24 1 0.4437 -2.5305 0.7313
25 1 2.1850 -4.2532 0.9626
26 1 3.1383 -3.5658 -0.4212
27 1 -2.0772 -5.5765 -1.6836
28 1 -3.9822 -6.1619 -0.2378
29 1 -1.2866 -7.7081 2.6856
30 1 0.6170 -7.1317 1.2341
31 1 1.5151 -2.6261 -2.1916
32 1 -0.1939 -2.8759 -1.6321
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594826858.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:27
Heat of formation + Delta-G solvation = -7.168757 kcal
Electronic energy + Delta-G solvation = -19699.011794 eV
Core-core repulsion = 16413.265933 eV
Total energy + Delta-G solvation = -3285.745861 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 344.982 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.34798 -38.29328 -36.94131 -35.58779 -32.77052 -32.65723 -31.35279 -29.63521
-28.38066 -25.01999 -24.58247 -23.14057 -22.97288 -19.97137 -18.70622 -17.86848
-16.97301 -16.45448 -16.04240 -15.88923 -14.98910 -14.80873 -14.60679 -14.03727
-13.80455 -13.63689 -13.11532 -12.86128 -12.44009 -11.87851 -11.83901 -11.74898
-11.62849 -11.54874 -11.47238 -11.29840 -11.02241 -10.80355 -10.60570 -10.56606
-10.33109 -9.34357 -9.29747 -9.21102 -9.09517 -8.62643 -8.29014 -6.18836
-4.23529 0.33434 0.70017 1.04438 1.24670 3.03802 3.22816 3.32070
3.35093 3.45946 4.02512 4.28960 4.32976 4.58926 4.61775 5.04031
5.09403 5.17007 5.30570 5.65109 5.66938 5.75163 5.83817 5.86733
6.11808 6.21672 6.33879 6.44093 6.47768 6.66357 6.79217 7.44224
7.58908 7.79211 8.18546 8.80457 9.42819 10.90835
Molecular weight = 344.98amu
Principal moments of inertia in cm(-1)
A = 0.013479 B = 0.003466 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2076.826916 B = 8077.235428 C = 9497.725430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.068 3.932
3 Si 0.894 3.106
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.284 1.284
7 C -0.516 4.516
8 H 0.065 0.935
9 C 0.034 3.966
10 C 0.127 3.873
11 N -1.047 6.047
12 S 2.710 3.290
13 O -0.964 6.964
14 O -0.961 6.961
15 C -0.656 4.656
16 C -0.010 4.010
17 C -0.113 4.113
18 C -0.043 4.043
19 Br -0.045 7.045
20 C -0.115 4.115
21 C -0.013 4.013
22 C 0.131 3.869
23 H 0.263 0.737
24 H 0.069 0.931
25 H 0.055 0.945
26 H 0.076 0.924
27 H 0.149 0.851
28 H 0.142 0.858
29 H 0.141 0.859
30 H 0.148 0.852
31 H 0.075 0.925
32 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.669 -14.064 4.099 16.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.135 4.135
3 Si 0.722 3.278
4 H -0.195 1.195
5 H -0.209 1.209
6 H -0.210 1.210
7 C -0.555 4.555
8 H 0.083 0.917
9 C 0.013 3.987
10 C 0.002 3.998
11 N -0.889 5.889
12 S 2.802 3.198
13 O -0.955 6.955
14 O -0.952 6.952
15 C -0.741 4.741
16 C -0.030 4.030
17 C -0.134 4.134
18 C -0.123 4.123
19 Br 0.041 6.959
20 C -0.135 4.135
21 C -0.033 4.033
22 C 0.007 3.993
23 H 0.073 0.927
24 H 0.087 0.913
25 H 0.074 0.926
26 H 0.094 0.906
27 H 0.167 0.833
28 H 0.160 0.840
29 H 0.159 0.841
30 H 0.166 0.834
31 H 0.093 0.907
32 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.107 -14.926 3.829 17.411
hybrid contribution 0.006 1.020 0.265 1.054
sum -8.101 -13.906 4.095 16.606
Atomic orbital electron populations
1.69951 1.06084 1.27017 1.49236 1.25027 0.94843 0.99386 0.94280
0.86501 0.80226 0.83405 0.77673 1.19545 1.20925 1.20955 1.21022
0.93143 0.89677 1.51691 0.91711 1.20541 0.94707 0.91109 0.92369
1.22862 0.93568 0.93654 0.89718 1.59866 1.54794 1.20056 1.54181
1.01252 0.73347 0.71856 0.73328 1.93537 1.52272 1.65475 1.84205
1.93546 1.81469 1.86398 1.33765 1.31492 1.16951 1.12880 1.12800
1.20987 0.90407 0.92704 0.98882 1.21249 1.00404 0.98821 0.92882
1.22116 0.93053 1.01432 0.95659 1.96754 1.41372 1.92174 1.65570
1.21227 0.90676 1.00946 1.00671 1.20957 0.99973 0.91502 0.90853
1.23158 0.99533 0.74909 1.01717 0.92704 0.91344 0.92612 0.90589
0.83296 0.84046 0.84105 0.83389 0.90686 0.92343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.64 13.26 55.43 0.74 -22.91 16
2 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16
3 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16
4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
7 C -0.52 -12.70 8.82 -34.44 -0.30 -13.01 16
8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16
9 C 0.03 0.75 3.80 -91.12 -0.35 0.41 16
10 C 0.13 2.37 8.29 -8.49 -0.07 2.30 16
11 N -1.05 -19.33 4.23 -125.00 -0.53 -19.86 16
12 S 2.71 46.42 6.27 -107.50 -0.67 45.75 16
13 O -0.96 -17.85 17.28 -57.17 -0.99 -18.84 16
14 O -0.96 -18.33 17.28 -57.17 -0.99 -19.32 16
15 C -0.66 -9.79 5.97 -39.58 -0.24 -10.02 16
16 C -0.01 -0.14 9.52 -39.59 -0.38 -0.51 16
17 C -0.11 -1.39 9.79 -39.56 -0.39 -1.78 16
18 C -0.04 -0.52 6.22 -39.52 -0.25 -0.76 16
19 Br -0.04 -0.46 33.70 -68.01 -2.29 -2.75 16
20 C -0.11 -1.37 9.79 -39.56 -0.39 -1.75 16
21 C -0.01 -0.17 9.52 -39.59 -0.38 -0.55 16
22 C 0.13 2.71 8.30 -8.36 -0.07 2.64 16
23 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16
24 H 0.07 1.63 8.11 -51.93 -0.42 1.21 16
25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
26 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16
27 H 0.15 1.91 7.62 -52.49 -0.40 1.51 16
28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16
29 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16
30 H 0.15 1.75 7.62 -52.49 -0.40 1.35 16
31 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16
32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
LS Contribution 316.44 15.07 4.77 4.77
Total: -1.00 -29.08 316.44 -11.18 -40.26
By element:
Atomic # 1 Polarization: 2.91 SS G_CDS: -3.30 Total: -0.39 kcal
Atomic # 6 Polarization: -18.51 SS G_CDS: -2.90 Total: -21.41 kcal
Atomic # 7 Polarization: -42.97 SS G_CDS: 0.21 Total: -42.77 kcal
Atomic # 8 Polarization: -36.18 SS G_CDS: -1.98 Total: -38.16 kcal
Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal
Atomic # 16 Polarization: 46.42 SS G_CDS: -0.67 Total: 45.75 kcal
Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -29.08 -11.18 -40.26 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594826858.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.090 kcal
(2) G-P(sol) polarization free energy of solvation -29.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.015 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds