Wall clock time and date at job start Wed Apr 1 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48505 * 109.47255 * 270.00300 * 3 2 1 5 5 H 1.48496 * 109.47284 * 30.00068 * 3 2 1 6 6 H 1.48496 * 109.47318 * 150.00588 * 3 2 1 7 7 C 1.38948 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00451 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00030 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.34732 * 117.00108 * 179.97438 * 13 12 10 15 15 O 1.21498 * 120.00051 * 0.02562 * 14 13 12 16 16 C 1.47516 * 120.00352 * 179.97438 * 14 13 12 17 17 C 1.39752 * 120.15927 * 0.02562 * 16 14 13 18 18 C 1.37788 * 119.88071 * 180.23026 * 17 16 14 19 19 C 1.38594 * 120.21334 * 359.49008 * 18 17 16 20 20 Br 1.89098 * 119.83264 * 180.28006 * 19 18 17 21 21 C 1.38321 * 120.33114 * 0.50610 * 19 18 17 22 22 C 1.38264 * 120.11233 * 359.75314 * 21 19 18 23 23 F 1.35100 * 120.10675 * 179.97438 * 22 21 19 24 24 H 0.97003 * 120.00403 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99699 * 359.97438 * 9 7 2 26 26 H 1.08991 * 109.47286 * 59.99786 * 12 10 9 27 27 H 1.08998 * 109.47077 * 299.99501 * 12 10 9 28 28 H 1.08002 * 120.05638 * 359.94444 * 17 16 14 29 29 H 1.08002 * 119.88871 * 179.73986 * 18 17 16 30 30 H 1.08000 * 119.94232 * 179.77062 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3703 -0.0021 13 8 6.0448 -3.7393 -0.0027 14 6 7.3805 -3.9158 -0.0033 15 8 8.1207 -2.9523 -0.0029 16 6 7.9445 -5.2789 -0.0034 17 6 7.0963 -6.3896 -0.0034 18 6 7.6293 -7.6603 0.0013 19 6 9.0034 -7.8402 -0.0046 20 35 9.7232 -9.5889 -0.0060 21 6 9.8511 -6.7472 -0.0047 22 6 9.3310 -5.4661 -0.0041 23 9 10.1590 -4.3986 -0.0038 24 1 -0.4851 0.8400 0.0004 25 1 3.8648 -0.3632 -0.0014 26 1 5.9241 -1.8573 0.8882 27 1 5.9241 -1.8558 -0.8917 28 1 6.0251 -6.2522 -0.0024 29 1 6.9739 -8.5187 0.0056 30 1 10.9210 -6.8947 -0.0056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:52 Heat of formation + Delta-G solvation = -125.878784 kcal Electronic energy + Delta-G solvation = -20715.725678 eV Core-core repulsion = 16858.618987 eV Total energy + Delta-G solvation = -3857.106690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 344.984 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.30392 -40.63838 -39.21570 -38.29867 -36.27859 -34.10583 -33.13188 -31.83982 -31.31793 -30.30057 -28.57259 -24.94379 -23.99711 -23.33303 -21.25914 -19.70324 -18.70144 -18.40120 -17.64217 -17.09062 -16.66409 -16.36409 -15.89571 -15.80949 -15.31001 -14.91707 -14.59715 -14.23704 -13.77506 -13.70449 -13.39020 -13.05907 -12.70831 -12.55320 -12.28611 -12.19334 -11.95071 -11.30874 -11.27348 -10.88877 -10.68323 -10.66663 -10.62393 -10.08148 -9.71142 -9.55978 -9.27209 -8.72288 -8.32966 -6.42370 -3.95543 -0.08186 0.58199 0.91760 2.13110 2.35316 2.96718 3.01513 3.06594 3.10452 3.50821 3.62951 4.01000 4.08857 4.17806 4.39197 4.54374 4.70577 4.92618 5.07754 5.16000 5.34605 5.42847 5.48919 5.54831 5.60529 5.63395 6.08751 6.31107 7.40183 7.60451 7.96857 8.43736 8.80021 9.26222 9.60827 10.69727 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.029909 B = 0.002167 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.959532 B =12920.354976 C =13841.170086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.558 6.558 12 C 0.059 3.941 13 O -0.317 6.317 14 C 0.503 3.497 15 O -0.494 6.494 16 C -0.143 4.143 17 C -0.021 4.021 18 C -0.115 4.115 19 C -0.035 4.035 20 Br -0.028 7.028 21 C -0.144 4.144 22 C 0.171 3.829 23 F -0.107 7.107 24 H 0.276 0.724 25 H 0.373 0.627 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.342 -16.712 -0.025 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.440 6.440 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.347 3.653 15 O -0.383 6.383 16 C -0.146 4.146 17 C -0.040 4.040 18 C -0.135 4.135 19 C -0.115 4.115 20 Br 0.058 6.942 21 C -0.165 4.165 22 C 0.151 3.849 23 F -0.085 7.085 24 H 0.087 0.913 25 H 0.207 0.793 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.184 0.816 29 H 0.169 0.831 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 22.203 -17.607 -0.025 28.336 hybrid contribution 0.657 2.190 0.015 2.286 sum 22.859 -15.417 -0.009 27.572 Atomic orbital electron populations 1.69607 1.05664 1.27826 1.48168 1.25039 0.95524 0.98093 0.97193 0.86683 0.79878 0.83845 0.79131 1.19375 1.19915 1.19323 1.19419 0.78608 0.96892 1.48784 0.85962 1.42028 1.07666 1.05705 1.66362 1.19127 0.86772 0.85190 0.85677 1.90600 1.68992 1.30672 1.53714 1.22819 0.95263 0.79858 1.03901 1.86568 1.21769 1.31693 1.83122 1.20763 0.81631 0.89016 0.73909 1.90904 1.60507 1.41835 1.45071 1.19367 0.92009 0.92536 1.10662 1.21644 1.01708 0.89842 0.90756 1.21251 0.92952 0.98553 1.00729 1.21883 0.95257 0.91749 1.02628 1.96821 1.85156 1.14939 1.97241 1.20990 1.01540 0.89270 1.04663 1.17486 0.86128 0.83824 0.97512 1.91639 1.70585 1.53711 1.92562 0.91337 0.79341 0.89146 0.89133 0.81563 0.83087 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.78 13.96 55.50 0.77 -24.00 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.78 27.73 -169.99 -4.71 14.06 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.40 5.09 -10.96 -0.06 -13.45 16 10 C 0.45 10.02 7.86 -10.99 -0.09 9.93 16 11 O -0.56 -14.71 16.08 -14.12 -0.23 -14.94 16 12 C 0.06 1.02 5.95 36.01 0.21 1.24 16 13 O -0.32 -5.41 9.00 -47.26 -0.43 -5.83 16 14 C 0.50 7.74 7.89 34.51 0.27 8.01 16 15 O -0.49 -8.50 15.13 -19.26 -0.29 -8.80 16 16 C -0.14 -1.75 5.88 -104.92 -0.62 -2.37 16 17 C -0.02 -0.21 9.61 -39.18 -0.38 -0.58 16 18 C -0.12 -0.92 9.76 -39.61 -0.39 -1.31 16 19 C -0.04 -0.28 6.23 -39.42 -0.25 -0.53 16 20 Br -0.03 -0.19 33.69 -68.01 -2.29 -2.48 16 21 C -0.14 -1.23 9.75 -39.54 -0.39 -1.62 16 22 C 0.17 1.92 7.29 -38.95 -0.28 1.64 16 23 F -0.11 -1.39 15.55 2.25 0.04 -1.35 16 24 H 0.28 7.20 8.31 -40.82 -0.34 6.87 16 25 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.17 1.68 7.61 -52.49 -0.40 1.28 16 29 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -32.37 304.31 -6.63 -39.00 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -1.88 Total: 6.31 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.14 Total: 6.90 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.72 Total: -37.45 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.94 Total: -29.57 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.29 Total: -2.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.37 -6.63 -39.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.878 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds