Wall clock time and date at job start Wed Apr 1 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47180 * 240.00313 * 3 2 1 5 5 H 1.48495 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46900 * 120.00474 * 3 2 1 7 7 C 1.38955 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46862 * 179.97438 * 12 10 9 14 14 C 1.34718 * 116.99774 * 180.02562 * 13 12 10 15 15 O 1.21480 * 120.00172 * 0.27071 * 14 13 12 16 16 C 1.47676 * 120.00100 * 180.02562 * 14 13 12 17 17 C 1.39651 * 120.14545 * 359.72136 * 16 14 13 18 18 C 1.38115 * 119.83027 * 179.71941 * 17 16 14 19 19 F 1.35102 * 119.93743 * 180.27380 * 18 17 16 20 20 C 1.38636 * 120.12465 * 0.55823 * 18 17 16 21 21 C 1.38253 * 120.29868 * 359.71773 * 20 18 17 22 22 C 1.38105 * 120.16791 * 0.02562 * 21 20 18 23 23 Br 1.89100 * 120.06845 * 179.97438 * 22 21 20 24 24 H 0.97003 * 120.00030 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99553 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47158 * 59.99972 * 12 10 9 27 27 H 1.08998 * 109.46923 * 299.99608 * 12 10 9 28 28 H 1.08000 * 120.08173 * 0.02562 * 17 16 14 29 29 H 1.08001 * 119.84961 * 179.69339 * 20 18 17 30 30 H 1.07996 * 119.92041 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 8 2.1871 -5.9666 -0.0016 14 6 1.6722 -7.2115 -0.0027 15 8 0.4679 -7.3706 -0.0082 16 6 2.5717 -8.3827 -0.0027 17 6 3.9566 -8.2033 -0.0074 18 6 4.7919 -9.3032 -0.0015 19 9 6.1320 -9.1322 -0.0005 20 6 4.2577 -10.5825 -0.0026 21 6 2.8874 -10.7662 -0.0037 22 6 2.0409 -9.6750 -0.0043 23 35 0.1671 -9.9296 -0.0065 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 0.0002 26 1 0.6173 -4.9205 -0.8914 27 1 0.6167 -4.9209 0.8886 28 1 4.3734 -7.2070 -0.0107 29 1 4.9150 -11.4395 -0.0030 30 1 2.4779 -11.7655 -0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238467.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:03 Heat of formation + Delta-G solvation = -120.202250 kcal Electronic energy + Delta-G solvation = -20765.130726 eV Core-core repulsion = 16908.270188 eV Total energy + Delta-G solvation = -3856.860537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 344.984 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.27286 -40.64580 -39.04536 -38.05208 -36.16493 -34.02202 -32.42130 -32.15721 -31.38844 -29.36399 -28.40176 -25.14881 -24.28556 -22.93990 -21.18727 -19.61118 -18.57062 -18.10069 -17.38436 -16.47443 -16.45178 -16.36410 -16.10101 -15.92890 -15.47538 -14.60855 -14.36936 -14.21387 -13.99878 -13.76561 -13.18319 -13.09529 -12.42719 -12.27277 -12.03103 -11.95493 -11.63884 -11.37278 -11.12611 -10.97556 -10.49887 -10.44448 -10.30843 -9.70364 -9.60957 -9.37688 -8.98650 -8.54926 -8.09949 -6.51263 -3.93451 0.07637 0.53927 1.27786 2.26776 2.49341 3.13107 3.15024 3.22288 3.26710 3.69583 3.71910 4.05173 4.13881 4.35510 4.53455 4.67895 4.90164 5.06066 5.13666 5.27922 5.40784 5.45452 5.52152 5.65513 5.67002 6.02261 6.19656 6.47828 7.46373 7.70705 7.92753 8.46572 9.05442 9.37452 9.87125 10.65811 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002837 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.227663 B = 9868.335442 C =11465.416153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.320 6.320 14 C 0.493 3.507 15 O -0.475 6.475 16 C -0.065 4.065 17 C -0.088 4.088 18 C 0.104 3.896 19 F -0.127 7.127 20 C -0.118 4.118 21 C -0.076 4.076 22 C -0.056 4.056 23 Br 0.000 7.000 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -24.085 -0.005 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.235 6.235 14 C 0.335 3.665 15 O -0.363 6.363 16 C -0.068 4.068 17 C -0.108 4.108 18 C 0.084 3.916 19 F -0.106 7.106 20 C -0.138 4.138 21 C -0.096 4.096 22 C -0.137 4.137 23 Br 0.087 6.913 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.327 -24.004 -0.010 24.041 hybrid contribution 0.297 0.987 0.004 1.031 sum 1.624 -23.017 -0.006 23.074 Atomic orbital electron populations 1.69606 1.06006 1.28632 1.49468 1.25313 0.95683 0.99872 0.96810 0.85856 0.78761 0.80051 0.79217 1.19729 1.20859 1.19734 1.19682 0.93466 0.81751 1.48388 0.87641 1.41686 1.09385 1.04050 1.63690 1.19290 0.88332 0.84039 0.86115 1.90561 1.13390 1.86775 1.55369 1.22799 0.90719 0.84131 1.03775 1.86564 1.40215 1.13676 1.83001 1.20854 0.87179 0.83874 0.74571 1.91021 1.15069 1.86177 1.44078 1.18705 0.92523 0.90636 1.04980 1.21662 0.91675 1.00666 0.96785 1.17614 0.77798 0.93843 1.02334 1.91571 1.29139 1.96255 1.93613 1.21409 0.95788 0.96391 1.00226 1.20922 0.91771 0.98413 0.98446 1.22073 0.93625 0.93915 1.04070 1.96843 1.01379 1.96314 1.96768 0.91542 0.77120 0.89259 0.89260 0.81565 0.83151 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.82 16 10 C 0.44 10.37 7.86 -10.98 -0.09 10.29 16 11 O -0.58 -15.74 16.08 -14.11 -0.23 -15.97 16 12 C 0.06 1.17 5.95 36.01 0.21 1.39 16 13 O -0.32 -5.81 9.01 -47.22 -0.43 -6.23 16 14 C 0.49 7.80 7.89 34.58 0.27 8.07 16 15 O -0.48 -7.90 13.26 -19.25 -0.26 -8.16 16 16 C -0.07 -0.84 5.87 -104.96 -0.62 -1.46 16 17 C -0.09 -1.05 9.59 -39.10 -0.38 -1.43 16 18 C 0.10 1.04 7.29 -39.48 -0.29 0.75 16 19 F -0.13 -1.36 17.26 2.25 0.04 -1.33 16 20 C -0.12 -0.88 10.02 -39.43 -0.39 -1.28 16 21 C -0.08 -0.59 9.77 -39.62 -0.39 -0.98 16 22 C -0.06 -0.62 6.26 -39.08 -0.24 -0.86 16 23 Br 0.00 0.00 30.39 -68.01 -2.07 -2.07 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 26 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.17 2.12 7.61 -52.49 -0.40 1.72 16 29 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -31.29 304.26 -6.78 -38.07 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -1.92 Total: 5.92 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.15 Total: 6.61 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.67 Total: -37.00 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.91 Total: -30.36 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.07 Total: -2.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.29 -6.78 -38.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238467.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.137 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds