Wall clock time and date at job start Wed Apr 1 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47180 * 240.00313 * 3 2 1 5 5 H 1.48495 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46900 * 120.00474 * 3 2 1 7 7 C 1.38955 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46862 * 179.97438 * 12 10 9 14 14 C 1.34718 * 116.99774 * 180.02562 * 13 12 10 15 15 O 1.21480 * 120.00172 * 0.27071 * 14 13 12 16 16 C 1.47676 * 120.00100 * 180.02562 * 14 13 12 17 17 C 1.39651 * 120.14545 * 359.72136 * 16 14 13 18 18 C 1.38115 * 119.83027 * 179.71941 * 17 16 14 19 19 F 1.35102 * 119.93743 * 180.27380 * 18 17 16 20 20 C 1.38636 * 120.12465 * 0.55823 * 18 17 16 21 21 C 1.38253 * 120.29868 * 359.71773 * 20 18 17 22 22 C 1.38105 * 120.16791 * 0.02562 * 21 20 18 23 23 Br 1.89100 * 120.06845 * 179.97438 * 22 21 20 24 24 H 0.97003 * 120.00030 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99553 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47158 * 59.99972 * 12 10 9 27 27 H 1.08998 * 109.46923 * 299.99608 * 12 10 9 28 28 H 1.08000 * 120.08173 * 0.02562 * 17 16 14 29 29 H 1.08001 * 119.84961 * 179.69339 * 20 18 17 30 30 H 1.07996 * 119.92041 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 8 2.1871 -5.9666 -0.0016 14 6 1.6722 -7.2115 -0.0027 15 8 0.4679 -7.3706 -0.0082 16 6 2.5717 -8.3827 -0.0027 17 6 3.9566 -8.2033 -0.0074 18 6 4.7919 -9.3032 -0.0015 19 9 6.1320 -9.1322 -0.0005 20 6 4.2577 -10.5825 -0.0026 21 6 2.8874 -10.7662 -0.0037 22 6 2.0409 -9.6750 -0.0043 23 35 0.1671 -9.9296 -0.0065 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 0.0002 26 1 0.6173 -4.9205 -0.8914 27 1 0.6167 -4.9209 0.8886 28 1 4.3734 -7.2070 -0.0107 29 1 4.9150 -11.4395 -0.0030 30 1 2.4779 -11.7655 -0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238467.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:02 Heat of formation + Delta-G solvation = -138.902247 kcal Electronic energy + Delta-G solvation = -20765.941618 eV Core-core repulsion = 16908.270188 eV Total energy + Delta-G solvation = -3857.671430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 344.984 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.08447 -41.85493 -40.29501 -39.62578 -37.54185 -36.04581 -33.44618 -33.25987 -32.98665 -30.30002 -29.89997 -26.79740 -25.53705 -23.81182 -22.26767 -21.45393 -20.08857 -19.65417 -18.48926 -17.79633 -17.77285 -17.36428 -17.13926 -16.94090 -16.78215 -16.38955 -15.78898 -15.78722 -15.16382 -14.69184 -14.58827 -14.34833 -13.72884 -13.65661 -13.56067 -13.14082 -12.93938 -12.84127 -12.49968 -12.37990 -12.13077 -11.95774 -11.74944 -11.57892 -10.55428 -10.48828 -10.37542 -10.12977 -9.81039 -8.53160 -6.03956 -0.79937 -0.24393 0.43164 1.21790 1.23090 1.37083 1.43336 1.54606 1.85999 2.24217 2.28267 2.81673 3.04059 3.12447 3.34941 3.54262 3.76750 3.89475 4.01685 4.14878 4.18366 4.20989 4.52245 4.68408 4.77126 4.87438 5.15482 5.35924 5.44624 5.87578 6.40894 6.51928 7.01680 7.38528 7.91970 8.63593 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002837 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.227663 B = 9868.335442 C =11465.416153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.074 3.926 13 O -0.339 6.339 14 C 0.492 3.508 15 O -0.487 6.487 16 C -0.088 4.088 17 C -0.100 4.100 18 C 0.098 3.902 19 F -0.133 7.133 20 C -0.090 4.090 21 C -0.060 4.060 22 C -0.061 4.061 23 Br -0.009 7.009 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.146 0.854 29 H 0.193 0.807 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -25.954 -0.004 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.003 4.003 13 O -0.254 6.254 14 C 0.336 3.664 15 O -0.376 6.376 16 C -0.091 4.091 17 C -0.120 4.120 18 C 0.079 3.921 19 F -0.111 7.111 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.142 4.142 23 Br 0.078 6.922 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.164 0.836 29 H 0.210 0.790 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.478 -25.890 -0.009 25.932 hybrid contribution 0.273 1.447 0.003 1.472 sum 1.751 -24.443 -0.005 24.506 Atomic orbital electron populations 1.69666 1.06950 1.29827 1.49017 1.26121 0.96574 1.02565 0.95581 0.84924 0.77765 0.76130 0.79156 1.19472 1.19356 1.19479 1.19696 0.92969 0.83396 1.50842 0.89750 1.41718 1.09568 1.04132 1.63939 1.20087 0.88084 0.85373 0.84204 1.90526 1.15443 1.87698 1.56823 1.22555 0.89993 0.82042 1.05669 1.86564 1.40636 1.14579 1.83653 1.21360 0.87652 0.83556 0.73834 1.91003 1.15579 1.86112 1.44913 1.18577 0.92364 0.90193 1.07979 1.21507 0.91743 1.00738 0.97995 1.17737 0.77358 0.94391 1.02662 1.91562 1.29465 1.96367 1.93706 1.21838 0.96071 0.96266 0.96762 1.21366 0.91454 0.98956 0.96185 1.22259 0.93567 0.93936 1.04406 1.96836 1.02427 1.96137 1.96785 0.90924 0.76518 0.87260 0.87245 0.83582 0.78999 0.79347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.57 13.05 21.66 0.28 -48.28 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 3 Si 1.00 42.02 29.55 68.60 2.03 44.05 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.52 5.29 -306.98 -1.62 -30.14 16 10 C 0.44 21.29 7.86 87.66 0.69 21.98 16 11 O -0.62 -35.13 16.08 15.73 0.25 -34.87 16 12 C 0.07 2.79 5.95 71.24 0.42 3.22 16 13 O -0.34 -12.64 9.01 -49.89 -0.45 -13.09 16 14 C 0.49 15.73 7.89 70.32 0.55 16.29 16 15 O -0.49 -16.12 13.26 19.90 0.26 -15.86 16 16 C -0.09 -2.25 5.87 -20.09 -0.12 -2.37 16 17 C -0.10 -2.39 9.59 22.58 0.22 -2.18 16 18 C 0.10 1.79 7.29 22.34 0.16 1.96 16 19 F -0.13 -2.66 17.26 44.97 0.78 -1.88 16 20 C -0.09 -0.98 10.02 22.37 0.22 -0.76 16 21 C -0.06 -0.71 9.77 22.24 0.22 -0.50 16 22 C -0.06 -1.23 6.26 22.60 0.14 -1.09 16 23 Br -0.01 -0.19 30.39 -20.37 -0.62 -0.81 16 24 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 25 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 26 H 0.11 3.66 8.13 -2.39 -0.02 3.64 16 27 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.15 4.02 7.61 -2.91 -0.02 3.99 16 29 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -69.26 304.26 5.19 -64.06 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.49 Total: 18.48 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 3.79 Total: 18.34 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.34 Total: -78.43 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: 0.07 Total: -63.81 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.62 Total: -0.81 kcal Total: -69.26 5.19 -64.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238467.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.837 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds