Wall clock time and date at job start Wed Apr 1 2020 02:58:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86799 * 120.00299 * 2 1
4 4 H 1.48502 * 109.47128 * 270.00430 * 3 2 1
5 5 H 1.48499 * 109.46794 * 29.99636 * 3 2 1
6 6 H 1.48492 * 109.47152 * 150.00078 * 3 2 1
7 7 C 1.38956 * 119.99705 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99330 * 179.97438 * 7 2 1
9 9 N 1.37097 * 120.00147 * 359.97438 * 7 2 1
10 10 C 1.34774 * 119.99702 * 180.02562 * 9 7 2
11 11 O 1.21297 * 120.00433 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99843 * 180.02562 * 10 9 7
13 13 O 1.45198 * 109.47034 * 179.97438 * 12 10 9
14 14 C 1.34718 * 117.00089 * 179.97438 * 13 12 10
15 15 O 1.21469 * 119.99675 * 0.02562 * 14 13 12
16 16 C 1.47728 * 120.00365 * 180.02562 * 14 13 12
17 17 C 1.39627 * 120.13092 * 359.97438 * 16 14 13
18 18 C 1.38163 * 119.84025 * 180.02562 * 17 16 14
19 19 F 1.35098 * 119.94580 * 180.02562 * 18 17 16
20 20 C 1.38587 * 120.10926 * 0.02562 * 18 17 16
21 21 C 1.38387 * 120.26800 * 359.97438 * 20 18 17
22 22 Br 1.89103 * 119.92217 * 180.02562 * 21 20 18
23 23 C 1.38075 * 120.15827 * 0.02562 * 21 20 18
24 24 H 0.97002 * 120.00205 * 0.02562 * 1 2 3
25 25 H 0.96990 * 120.00095 * 0.02562 * 9 7 2
26 26 H 1.09005 * 109.47390 * 60.00114 * 12 10 9
27 27 H 1.08998 * 109.47288 * 299.99691 * 12 10 9
28 28 H 1.07999 * 120.07690 * 0.05385 * 17 16 14
29 29 H 1.07995 * 119.86164 * 179.97438 * 20 18 17
30 30 H 1.08004 * 120.05030 * 179.72513 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4456 2.6526 0.7000
6 1 3.5457 1.4401 0.7000
7 6 2.0088 -1.2034 -0.0005
8 1 3.0888 -1.2034 -0.0010
9 7 1.3233 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0005
11 8 3.2102 -3.5579 -0.0010
12 6 1.2437 -4.8630 -0.0011
13 8 2.1873 -5.9666 -0.0016
14 6 1.6724 -7.2115 -0.0016
15 8 0.4681 -7.3706 -0.0017
16 6 2.5722 -8.3831 -0.0016
17 6 3.9569 -8.2033 -0.0020
18 6 4.7929 -9.3033 -0.0024
19 9 6.1330 -9.1319 -0.0024
20 6 4.2591 -10.5823 -0.0030
21 6 2.8874 -10.7656 -0.0026
22 35 2.1696 -12.5151 -0.0026
23 6 2.0417 -9.6742 -0.0021
24 1 -0.4850 0.8400 -0.0004
25 1 0.3534 -2.3907 -0.0005
26 1 0.6174 -4.9206 -0.8914
27 1 0.6167 -4.9210 0.8886
28 1 4.3733 -7.2069 -0.0015
29 1 4.9163 -11.4392 -0.0038
30 1 0.9715 -9.8193 -0.0063
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731242629.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:57
Heat of formation + Delta-G solvation = -152.483496 kcal
Electronic energy + Delta-G solvation = -20501.205422 eV
Core-core repulsion = 16642.945065 eV
Total energy + Delta-G solvation = -3858.260357 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 344.984 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-50.11914 -41.91164 -40.32585 -39.70097 -37.60060 -36.04481 -33.89171 -33.42031
-32.31040 -30.66686 -29.98949 -26.86143 -25.63409 -23.78769 -22.30369 -21.46158
-20.09313 -19.58073 -18.58240 -17.82792 -17.80904 -17.49199 -17.34337 -17.00894
-16.83618 -16.41132 -15.79183 -15.78807 -15.17470 -14.70979 -14.60039 -14.31565
-13.85125 -13.79489 -13.56479 -13.23586 -12.94681 -12.84866 -12.48099 -12.12615
-12.02070 -11.94688 -11.91071 -11.58357 -11.48224 -10.53263 -10.35313 -10.12538
-10.00379 -8.53099 -6.03576 -0.82199 -0.33698 0.24741 1.09915 1.20014
1.35655 1.43894 1.56649 1.86034 2.18776 2.28319 2.77973 2.98029
3.12704 3.37927 3.60122 3.70694 3.72284 3.87829 4.10018 4.14020
4.20827 4.32230 4.56603 4.69776 4.83248 5.10923 5.31812 5.36679
5.87955 6.37076 6.49656 7.02253 7.39000 7.92263 8.63867
Molecular weight = 344.98amu
Principal moments of inertia in cm(-1)
A = 0.028688 B = 0.002128 C = 0.001983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 975.789659 B =13155.833627 C =14116.479757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.008 4.008
3 Si 0.997 3.003
4 H -0.269 1.269
5 H -0.270 1.270
6 H -0.271 1.271
7 C -0.337 4.337
8 H 0.084 0.916
9 N -0.557 5.557
10 C 0.436 3.564
11 O -0.617 6.617
12 C 0.072 3.928
13 O -0.335 6.335
14 C 0.511 3.489
15 O -0.514 6.514
16 C -0.096 4.096
17 C -0.083 4.083
18 C 0.096 3.904
19 F -0.129 7.129
20 C -0.075 4.075
21 C -0.080 4.080
22 Br -0.007 7.007
23 C -0.032 4.032
24 H 0.281 0.719
25 H 0.401 0.599
26 H 0.112 0.888
27 H 0.112 0.888
28 H 0.153 0.847
29 H 0.180 0.820
30 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.060 -26.612 -0.016 26.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.209 4.209
3 Si 0.820 3.180
4 H -0.195 1.195
5 H -0.194 1.194
6 H -0.196 1.196
7 C -0.466 4.466
8 H 0.102 0.898
9 N -0.194 5.194
10 C 0.223 3.777
11 O -0.504 6.504
12 C -0.005 4.005
13 O -0.250 6.250
14 C 0.356 3.644
15 O -0.405 6.405
16 C -0.098 4.098
17 C -0.102 4.102
18 C 0.076 3.924
19 F -0.108 7.108
20 C -0.095 4.095
21 C -0.160 4.160
22 Br 0.079 6.921
23 C -0.051 4.051
24 H 0.091 0.909
25 H 0.235 0.765
26 H 0.130 0.870
27 H 0.130 0.870
28 H 0.170 0.830
29 H 0.198 0.802
30 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 3.128 -27.115 -0.012 27.295
hybrid contribution 0.018 1.564 -0.007 1.564
sum 3.146 -25.551 -0.019 25.744
Atomic orbital electron populations
1.69666 1.06931 1.29749 1.49133 1.26114 0.96573 1.02563 0.95659
0.84869 0.77916 0.76426 0.78797 1.19463 1.19447 1.19554 1.19712
0.92937 0.83353 1.50644 0.89755 1.41726 1.09601 1.04152 1.63951
1.20070 0.88081 0.85346 0.84203 1.90533 1.15415 1.87681 1.56782
1.22619 0.89993 0.82002 1.05911 1.86571 1.40535 1.14544 1.83380
1.21249 0.87183 0.83371 0.72614 1.90837 1.16262 1.86874 1.46490
1.18668 0.91889 0.90739 1.08520 1.21710 0.92386 1.00633 0.95485
1.17329 0.77631 0.93395 1.04065 1.91573 1.29104 1.96190 1.93884
1.21583 0.94496 0.97164 0.96275 1.21443 0.94268 0.92827 1.07460
1.96840 1.84959 1.12783 1.97546 1.21344 1.01910 0.88699 0.93196
0.90945 0.76489 0.87031 0.87027 0.82972 0.80231 0.82073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.00 13.05 21.66 0.28 -47.72 16
2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16
3 Si 1.00 41.59 29.55 68.60 2.03 43.62 16
4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16
6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
7 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16
8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16
9 N -0.56 -27.97 5.29 -306.98 -1.62 -29.59 16
10 C 0.44 20.73 7.86 87.66 0.69 21.42 16
11 O -0.62 -34.28 16.08 15.72 0.25 -34.02 16
12 C 0.07 2.58 5.95 71.24 0.42 3.00 16
13 O -0.34 -11.83 9.01 -49.89 -0.45 -12.28 16
14 C 0.51 15.23 7.90 70.33 0.56 15.79 16
15 O -0.51 -16.42 16.13 19.94 0.32 -16.10 16
16 C -0.10 -2.26 5.87 -20.11 -0.12 -2.37 16
17 C -0.08 -1.86 9.60 22.59 0.22 -1.65 16
18 C 0.10 1.79 7.29 22.34 0.16 1.96 16
19 F -0.13 -2.61 17.26 44.97 0.78 -1.84 16
20 C -0.07 -1.06 9.76 22.39 0.22 -0.85 16
21 C -0.08 -1.23 6.22 22.27 0.14 -1.10 16
22 Br -0.01 -0.09 33.69 -20.37 -0.69 -0.78 16
23 C -0.03 -0.59 9.33 22.56 0.21 -0.38 16
24 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16
25 H 0.40 18.88 7.90 -92.72 -0.73 18.15 16
26 H 0.11 3.53 8.14 -2.38 -0.02 3.52 16
27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16
28 H 0.15 3.84 7.61 -2.91 -0.02 3.82 16
29 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16
30 H 0.16 2.86 7.65 -2.91 -0.02 2.84 16
Total: -1.00 -65.36 309.29 5.17 -60.18
By element:
Atomic # 1 Polarization: 20.03 SS G_CDS: 0.49 Total: 20.52 kcal
Atomic # 6 Polarization: 14.22 SS G_CDS: 3.78 Total: 18.00 kcal
Atomic # 7 Polarization: -75.97 SS G_CDS: -1.34 Total: -77.31 kcal
Atomic # 8 Polarization: -62.53 SS G_CDS: 0.13 Total: -62.40 kcal
Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal
Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal
Atomic # 35 Polarization: -0.09 SS G_CDS: -0.69 Total: -0.78 kcal
Total: -65.36 5.17 -60.18 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731242629.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.299 kcal
(2) G-P(sol) polarization free energy of solvation -65.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds