Wall clock time and date at job start Wed Apr 1 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46847 * 274.99508 * 3 2 1 5 5 H 1.48504 * 109.46999 * 34.98945 * 3 2 1 6 6 H 1.48499 * 109.47591 * 154.99600 * 3 2 1 7 7 C 1.39047 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00032 * 210.99984 * 7 2 1 9 9 N 1.36874 * 119.99618 * 31.00962 * 7 2 1 10 10 C 1.46504 * 120.00413 * 8.81160 * 9 7 2 11 11 C 1.50702 * 109.46874 * 264.79251 * 10 9 7 12 12 O 1.20826 * 120.00000 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00007 * 188.80547 * 9 7 2 15 15 O 1.21600 * 120.00463 * 184.01896 * 14 9 7 16 16 C 1.47674 * 119.99841 * 4.02352 * 14 9 7 17 17 C 1.39668 * 120.14714 * 306.00015 * 16 14 9 18 18 C 1.38113 * 119.82917 * 179.79202 * 17 16 14 19 19 F 1.35105 * 119.93553 * 180.23694 * 18 17 16 20 20 C 1.38636 * 120.12938 * 0.46083 * 18 17 16 21 21 C 1.38264 * 120.29723 * 359.79611 * 20 18 17 22 22 C 1.38102 * 120.16797 * 359.97000 * 21 20 18 23 23 Br 1.89102 * 120.06229 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00182 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46909 * 24.78960 * 10 9 7 26 26 H 1.08991 * 109.47252 * 144.79327 * 10 9 7 27 27 H 0.96693 * 117.00171 * 179.97438 * 13 11 10 28 28 H 1.07998 * 120.08537 * 0.02570 * 17 16 14 29 29 H 1.08003 * 119.84927 * 179.76420 * 20 18 17 30 30 H 1.07999 * 119.91550 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3895 2.1073 -1.3948 5 1 1.5018 2.6199 0.8029 6 1 3.5940 1.4121 0.5918 7 6 2.0089 -1.2042 0.0005 8 1 2.9732 -1.2707 0.4823 9 7 1.4712 -2.3051 -0.6097 10 6 0.2619 -2.1728 -1.4261 11 6 -0.9478 -2.4975 -0.5882 12 8 -0.8136 -2.8080 0.5718 13 8 -2.1744 -2.4417 -1.1304 14 6 2.0543 -3.5109 -0.4596 15 8 1.6201 -4.4752 -1.0598 16 6 3.2204 -3.6610 0.4339 17 6 4.3413 -2.8446 0.2675 18 6 5.4266 -2.9877 1.1095 19 9 6.5101 -2.1958 0.9535 20 6 5.4083 -3.9455 2.1117 21 6 4.3036 -4.7603 2.2778 22 6 3.2097 -4.6244 1.4458 23 35 1.7007 -5.7408 1.6752 24 1 -0.4850 0.8400 -0.0004 25 1 0.1837 -1.1507 -1.7964 26 1 0.3155 -2.8616 -2.2690 27 1 -2.9196 -2.6588 -0.5537 28 1 4.3578 -2.1006 -0.5153 29 1 6.2611 -4.0562 2.7652 30 1 4.2962 -5.5047 3.0602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:01 Heat of formation + Delta-G solvation = -117.528648 kcal Electronic energy + Delta-G solvation = -22534.151480 eV Core-core repulsion = 18677.406879 eV Total energy + Delta-G solvation = -3856.744601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 344.984 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.70944 -39.78307 -38.84139 -37.47081 -35.26700 -34.67145 -31.92442 -31.63465 -31.23729 -28.61391 -27.81477 -25.19882 -23.40784 -22.26703 -20.95204 -19.54347 -18.22456 -17.06931 -16.64480 -16.32344 -15.93662 -15.65419 -15.47881 -15.33318 -14.53515 -14.47736 -14.41486 -13.80371 -13.48276 -12.98716 -12.84288 -12.45574 -11.95988 -11.88046 -11.66948 -11.54251 -11.28168 -11.05634 -10.67795 -10.55132 -10.33072 -10.16387 -9.82503 -9.60122 -9.13070 -8.88274 -8.62847 -8.21051 -8.17777 -6.75083 -4.07020 1.11527 1.30099 2.07594 2.96413 3.11744 3.14451 3.33288 3.55965 3.62480 3.95582 4.18937 4.33767 4.55047 4.79614 4.96142 5.08562 5.43214 5.49457 5.86482 6.00960 6.12753 6.22229 6.27931 6.40519 6.47631 6.52158 6.94094 7.22158 7.29337 7.53732 8.03955 8.78205 9.05329 9.15390 9.55446 10.31832 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.007616 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.921911 B = 3675.454541 C = 5791.756015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.354 4.354 8 H 0.116 0.884 9 N -0.405 5.405 10 C 0.150 3.850 11 C 0.492 3.508 12 O -0.500 6.500 13 O -0.534 6.534 14 C 0.491 3.509 15 O -0.577 6.577 16 C -0.018 4.018 17 C -0.117 4.117 18 C 0.102 3.898 19 F -0.138 7.138 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.071 4.071 23 Br -0.028 7.028 24 H 0.276 0.724 25 H 0.127 0.873 26 H 0.090 0.910 27 H 0.392 0.608 28 H 0.155 0.845 29 H 0.139 0.861 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 -4.958 1.968 7.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.133 0.867 9 N -0.122 5.122 10 C 0.024 3.976 11 C 0.332 3.668 12 O -0.385 6.385 13 O -0.345 6.345 14 C 0.280 3.720 15 O -0.462 6.462 16 C -0.023 4.023 17 C -0.138 4.138 18 C 0.082 3.918 19 F -0.117 7.117 20 C -0.171 4.171 21 C -0.093 4.093 22 C -0.152 4.152 23 Br 0.058 6.942 24 H 0.087 0.913 25 H 0.144 0.856 26 H 0.108 0.892 27 H 0.248 0.752 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.226 -5.651 1.818 7.286 hybrid contribution 0.270 1.387 0.671 1.564 sum 4.496 -4.264 2.489 6.677 Atomic orbital electron populations 1.70036 1.06489 1.28732 1.42832 1.25225 0.94962 1.00188 0.95830 0.86085 0.80161 0.80975 0.78746 1.19784 1.20794 1.18889 1.20015 1.04165 0.86190 1.37626 0.86653 1.43448 1.20938 1.06495 1.41316 1.20595 0.80759 1.04512 0.91687 1.23677 0.83549 0.71970 0.87596 1.90611 1.86034 1.43688 1.18126 1.84511 1.17553 1.83876 1.48553 1.17631 0.85735 0.83104 0.85565 1.90701 1.67155 1.38027 1.50319 1.19701 0.94864 0.93035 0.94707 1.21413 0.91455 1.00184 1.00710 1.17607 0.84374 0.92112 0.97714 1.91495 1.52645 1.72404 1.95155 1.21056 1.00000 0.96809 0.99275 1.20789 0.91167 0.99051 0.98307 1.21830 0.95001 0.99064 0.99277 1.96708 1.37814 1.63106 1.96595 0.91338 0.85572 0.89169 0.75156 0.82755 0.84284 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.72 9.82 55.50 0.54 -20.18 16 2 C 0.05 1.08 4.71 -17.45 -0.08 1.00 16 3 Si 0.92 18.32 29.65 -169.99 -5.04 13.28 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.35 -8.49 8.64 -15.00 -0.13 -8.62 16 8 H 0.12 2.67 4.71 -52.49 -0.25 2.42 16 9 N -0.41 -9.75 2.16 -117.23 -0.25 -10.00 16 10 C 0.15 3.41 5.19 -5.19 -0.03 3.38 16 11 C 0.49 11.46 6.73 36.01 0.24 11.71 16 12 O -0.50 -13.23 17.02 -18.75 -0.32 -13.55 16 13 O -0.53 -10.24 13.42 -39.25 -0.53 -10.77 16 14 C 0.49 11.66 6.32 -12.41 -0.08 11.58 16 15 O -0.58 -14.59 15.51 5.28 0.08 -14.51 16 16 C -0.02 -0.37 5.05 -104.96 -0.53 -0.90 16 17 C -0.12 -2.17 7.44 -39.09 -0.29 -2.46 16 18 C 0.10 1.64 7.29 -39.48 -0.29 1.36 16 19 F -0.14 -2.16 17.26 2.25 0.04 -2.13 16 20 C -0.15 -2.13 10.02 -39.42 -0.39 -2.53 16 21 C -0.07 -1.10 9.77 -39.62 -0.39 -1.49 16 22 C -0.07 -1.34 6.25 -39.08 -0.24 -1.59 16 23 Br -0.03 -0.55 31.78 -68.01 -2.16 -2.71 16 24 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 25 H 0.13 2.83 6.15 -51.93 -0.32 2.51 16 26 H 0.09 1.91 7.53 -51.93 -0.39 1.52 16 27 H 0.39 5.81 9.10 45.56 0.41 6.23 16 28 H 0.15 2.78 7.18 -52.49 -0.38 2.40 16 29 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -30.04 294.44 -6.31 -36.35 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.90 Total: 8.33 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -2.21 Total: 11.44 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 0.29 Total: -30.18 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.76 Total: -38.83 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.16 Total: -2.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.04 -6.31 -36.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.181 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds