Wall clock time and date at job start Wed Apr 1 2020 02:59:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31364 * 1
3 3 Si 1.86798 * 120.00077 * 2 1
4 4 H 1.48500 * 109.46847 * 274.99508 * 3 2 1
5 5 H 1.48504 * 109.46999 * 34.98945 * 3 2 1
6 6 H 1.48499 * 109.47591 * 154.99600 * 3 2 1
7 7 C 1.39047 * 120.00124 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00032 * 210.99984 * 7 2 1
9 9 N 1.36874 * 119.99618 * 31.00962 * 7 2 1
10 10 C 1.46504 * 120.00413 * 8.81160 * 9 7 2
11 11 C 1.50702 * 109.46874 * 264.79251 * 10 9 7
12 12 O 1.20826 * 120.00000 * 359.97438 * 11 10 9
13 13 O 1.34225 * 120.00224 * 179.97438 * 11 10 9
14 14 C 1.34777 * 120.00007 * 188.80547 * 9 7 2
15 15 O 1.21600 * 120.00463 * 184.01896 * 14 9 7
16 16 C 1.47674 * 119.99841 * 4.02352 * 14 9 7
17 17 C 1.39668 * 120.14714 * 306.00015 * 16 14 9
18 18 C 1.38113 * 119.82917 * 179.79202 * 17 16 14
19 19 F 1.35105 * 119.93553 * 180.23694 * 18 17 16
20 20 C 1.38636 * 120.12938 * 0.46083 * 18 17 16
21 21 C 1.38264 * 120.29723 * 359.79611 * 20 18 17
22 22 C 1.38102 * 120.16797 * 359.97000 * 21 20 18
23 23 Br 1.89102 * 120.06229 * 179.97438 * 22 21 20
24 24 H 0.97000 * 120.00182 * 0.02562 * 1 2 3
25 25 H 1.08993 * 109.46909 * 24.78960 * 10 9 7
26 26 H 1.08991 * 109.47252 * 144.79327 * 10 9 7
27 27 H 0.96693 * 117.00171 * 179.97438 * 13 11 10
28 28 H 1.07998 * 120.08537 * 0.02570 * 17 16 14
29 29 H 1.08003 * 119.84927 * 179.76420 * 20 18 17
30 30 H 1.07999 * 119.91550 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3136 0.0000 0.0000
3 14 2.2477 1.6177 0.0000
4 1 2.3895 2.1073 -1.3948
5 1 1.5018 2.6199 0.8029
6 1 3.5940 1.4121 0.5918
7 6 2.0089 -1.2042 0.0005
8 1 2.9732 -1.2707 0.4823
9 7 1.4712 -2.3051 -0.6097
10 6 0.2619 -2.1728 -1.4261
11 6 -0.9478 -2.4975 -0.5882
12 8 -0.8136 -2.8080 0.5718
13 8 -2.1744 -2.4417 -1.1304
14 6 2.0543 -3.5109 -0.4596
15 8 1.6201 -4.4752 -1.0598
16 6 3.2204 -3.6610 0.4339
17 6 4.3413 -2.8446 0.2675
18 6 5.4266 -2.9877 1.1095
19 9 6.5101 -2.1958 0.9535
20 6 5.4083 -3.9455 2.1117
21 6 4.3036 -4.7603 2.2778
22 6 3.2097 -4.6244 1.4458
23 35 1.7007 -5.7408 1.6752
24 1 -0.4850 0.8400 -0.0004
25 1 0.1837 -1.1507 -1.7964
26 1 0.3155 -2.8616 -2.2690
27 1 -2.9196 -2.6588 -0.5537
28 1 4.3578 -2.1006 -0.5153
29 1 6.2611 -4.0562 2.7652
30 1 4.2962 -5.5047 3.0602
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000739078803.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:01
Heat of formation + Delta-G solvation = -117.528648 kcal
Electronic energy + Delta-G solvation = -22534.151480 eV
Core-core repulsion = 18677.406879 eV
Total energy + Delta-G solvation = -3856.744601 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 344.984 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-48.70944 -39.78307 -38.84139 -37.47081 -35.26700 -34.67145 -31.92442 -31.63465
-31.23729 -28.61391 -27.81477 -25.19882 -23.40784 -22.26703 -20.95204 -19.54347
-18.22456 -17.06931 -16.64480 -16.32344 -15.93662 -15.65419 -15.47881 -15.33318
-14.53515 -14.47736 -14.41486 -13.80371 -13.48276 -12.98716 -12.84288 -12.45574
-11.95988 -11.88046 -11.66948 -11.54251 -11.28168 -11.05634 -10.67795 -10.55132
-10.33072 -10.16387 -9.82503 -9.60122 -9.13070 -8.88274 -8.62847 -8.21051
-8.17777 -6.75083 -4.07020 1.11527 1.30099 2.07594 2.96413 3.11744
3.14451 3.33288 3.55965 3.62480 3.95582 4.18937 4.33767 4.55047
4.79614 4.96142 5.08562 5.43214 5.49457 5.86482 6.00960 6.12753
6.22229 6.27931 6.40519 6.47631 6.52158 6.94094 7.22158 7.29337
7.53732 8.03955 8.78205 9.05329 9.15390 9.55446 10.31832
Molecular weight = 344.98amu
Principal moments of inertia in cm(-1)
A = 0.010345 B = 0.007616 C = 0.004833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2705.921911 B = 3675.454541 C = 5791.756015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.845 5.845
2 C 0.046 3.954
3 Si 0.915 3.085
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.265 1.265
7 C -0.354 4.354
8 H 0.116 0.884
9 N -0.405 5.405
10 C 0.150 3.850
11 C 0.492 3.508
12 O -0.500 6.500
13 O -0.534 6.534
14 C 0.491 3.509
15 O -0.577 6.577
16 C -0.018 4.018
17 C -0.117 4.117
18 C 0.102 3.898
19 F -0.138 7.138
20 C -0.151 4.151
21 C -0.073 4.073
22 C -0.071 4.071
23 Br -0.028 7.028
24 H 0.276 0.724
25 H 0.127 0.873
26 H 0.090 0.910
27 H 0.392 0.608
28 H 0.155 0.845
29 H 0.139 0.861
30 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.797 -4.958 1.968 7.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.481 5.481
2 C -0.162 4.162
3 Si 0.740 3.260
4 H -0.198 1.198
5 H -0.208 1.208
6 H -0.189 1.189
7 C -0.480 4.480
8 H 0.133 0.867
9 N -0.122 5.122
10 C 0.024 3.976
11 C 0.332 3.668
12 O -0.385 6.385
13 O -0.345 6.345
14 C 0.280 3.720
15 O -0.462 6.462
16 C -0.023 4.023
17 C -0.138 4.138
18 C 0.082 3.918
19 F -0.117 7.117
20 C -0.171 4.171
21 C -0.093 4.093
22 C -0.152 4.152
23 Br 0.058 6.942
24 H 0.087 0.913
25 H 0.144 0.856
26 H 0.108 0.892
27 H 0.248 0.752
28 H 0.172 0.828
29 H 0.157 0.843
30 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 4.226 -5.651 1.818 7.286
hybrid contribution 0.270 1.387 0.671 1.564
sum 4.496 -4.264 2.489 6.677
Atomic orbital electron populations
1.70036 1.06489 1.28732 1.42832 1.25225 0.94962 1.00188 0.95830
0.86085 0.80161 0.80975 0.78746 1.19784 1.20794 1.18889 1.20015
1.04165 0.86190 1.37626 0.86653 1.43448 1.20938 1.06495 1.41316
1.20595 0.80759 1.04512 0.91687 1.23677 0.83549 0.71970 0.87596
1.90611 1.86034 1.43688 1.18126 1.84511 1.17553 1.83876 1.48553
1.17631 0.85735 0.83104 0.85565 1.90701 1.67155 1.38027 1.50319
1.19701 0.94864 0.93035 0.94707 1.21413 0.91455 1.00184 1.00710
1.17607 0.84374 0.92112 0.97714 1.91495 1.52645 1.72404 1.95155
1.21056 1.00000 0.96809 0.99275 1.20789 0.91167 0.99051 0.98307
1.21830 0.95001 0.99064 0.99277 1.96708 1.37814 1.63106 1.96595
0.91338 0.85572 0.89169 0.75156 0.82755 0.84284 0.84197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -20.72 9.82 55.50 0.54 -20.18 16
2 C 0.05 1.08 4.71 -17.45 -0.08 1.00 16
3 Si 0.92 18.32 29.65 -169.99 -5.04 13.28 16
4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16
5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16
7 C -0.35 -8.49 8.64 -15.00 -0.13 -8.62 16
8 H 0.12 2.67 4.71 -52.49 -0.25 2.42 16
9 N -0.41 -9.75 2.16 -117.23 -0.25 -10.00 16
10 C 0.15 3.41 5.19 -5.19 -0.03 3.38 16
11 C 0.49 11.46 6.73 36.01 0.24 11.71 16
12 O -0.50 -13.23 17.02 -18.75 -0.32 -13.55 16
13 O -0.53 -10.24 13.42 -39.25 -0.53 -10.77 16
14 C 0.49 11.66 6.32 -12.41 -0.08 11.58 16
15 O -0.58 -14.59 15.51 5.28 0.08 -14.51 16
16 C -0.02 -0.37 5.05 -104.96 -0.53 -0.90 16
17 C -0.12 -2.17 7.44 -39.09 -0.29 -2.46 16
18 C 0.10 1.64 7.29 -39.48 -0.29 1.36 16
19 F -0.14 -2.16 17.26 2.25 0.04 -2.13 16
20 C -0.15 -2.13 10.02 -39.42 -0.39 -2.53 16
21 C -0.07 -1.10 9.77 -39.62 -0.39 -1.49 16
22 C -0.07 -1.34 6.25 -39.08 -0.24 -1.59 16
23 Br -0.03 -0.55 31.78 -68.01 -2.16 -2.71 16
24 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16
25 H 0.13 2.83 6.15 -51.93 -0.32 2.51 16
26 H 0.09 1.91 7.53 -51.93 -0.39 1.52 16
27 H 0.39 5.81 9.10 45.56 0.41 6.23 16
28 H 0.15 2.78 7.18 -52.49 -0.38 2.40 16
29 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16
30 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16
LS Contribution 294.44 15.07 4.44 4.44
Total: -1.00 -30.04 294.44 -6.31 -36.35
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -0.90 Total: 8.33 kcal
Atomic # 6 Polarization: 13.65 SS G_CDS: -2.21 Total: 11.44 kcal
Atomic # 7 Polarization: -30.47 SS G_CDS: 0.29 Total: -30.18 kcal
Atomic # 8 Polarization: -38.06 SS G_CDS: -0.76 Total: -38.83 kcal
Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal
Atomic # 35 Polarization: -0.55 SS G_CDS: -2.16 Total: -2.71 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -30.04 -6.31 -36.35 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739078803.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.181 kcal
(2) G-P(sol) polarization free energy of solvation -30.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds