Wall clock time and date at job start Wed Apr 1 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38679 * 119.27332 * 2 1 4 4 C 1.38017 * 119.62282 * 179.74057 * 3 2 1 5 5 C 1.41003 * 118.28200 * 0.50297 * 4 3 2 6 6 C 1.41018 * 120.70739 * 179.75823 * 5 4 3 7 7 H 1.07993 * 119.99983 * 204.53907 * 6 5 4 8 8 C 1.39954 * 119.99598 * 24.25456 * 6 5 4 9 9 N 1.30861 * 120.00125 * 17.03895 * 8 6 5 10 10 Si 1.86795 * 119.99678 * 197.03427 * 8 6 5 11 11 H 1.48509 * 109.47253 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47272 * 120.00128 * 10 8 6 13 13 H 1.48494 * 109.47251 * 240.00586 * 10 8 6 14 14 C 1.41706 * 118.58467 * 359.47906 * 5 4 3 15 15 N 1.38098 * 119.90380 * 180.25255 * 14 5 4 16 16 C 1.50019 * 110.99794 * 65.78205 * 15 14 5 17 17 C 1.55919 * 106.27689 * 146.38532 * 16 15 14 18 18 C 1.50354 * 102.88418 * 5.14599 * 17 16 15 19 19 H 1.09001 * 107.79367 * 79.88621 * 18 17 16 20 20 C 1.45221 * 111.00156 * 180.02562 * 15 14 5 21 21 H 1.08995 * 111.02576 * 311.37780 * 20 15 14 22 22 C 1.52019 * 123.00392 * 86.46753 * 20 15 14 23 23 C 1.56194 * 100.95543 * 150.50959 * 22 20 15 24 24 N 1.43444 * 128.25131 * 211.44132 * 18 17 16 25 25 C 1.46896 * 111.27365 * 271.24169 * 24 18 17 26 26 C 1.52997 * 109.47482 * 172.14498 * 25 24 18 27 27 N 1.46900 * 109.47152 * 180.02562 * 26 25 24 28 28 C 1.46899 * 111.00367 * 66.04584 * 27 26 25 29 29 C 1.46897 * 111.00040 * 189.99983 * 27 26 25 30 30 N 1.31968 * 119.27478 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47418 * 270.01525 * 1 2 3 32 32 H 1.09001 * 109.47287 * 30.02153 * 1 2 3 33 33 H 1.09001 * 109.47131 * 150.02137 * 1 2 3 34 34 H 1.07995 * 120.19068 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.85549 * 180.26322 * 4 3 2 36 36 H 0.97000 * 120.00113 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.09680 * 265.58665 * 16 15 14 38 38 H 1.09000 * 110.09817 * 27.18225 * 16 15 14 39 39 H 1.08995 * 110.72789 * 246.79429 * 17 16 15 40 40 H 1.09007 * 110.72658 * 123.49919 * 17 16 15 41 41 H 1.08998 * 111.11806 * 268.42695 * 22 20 15 42 42 H 1.08992 * 111.12258 * 32.58559 * 22 20 15 43 43 H 1.08991 * 110.06665 * 95.66277 * 23 22 20 44 44 H 1.09001 * 110.05752 * 217.11909 * 23 22 20 45 45 H 1.09004 * 109.46920 * 292.14977 * 25 24 18 46 46 H 1.09006 * 109.46957 * 52.14225 * 25 24 18 47 47 H 1.08999 * 109.46740 * 300.00128 * 26 25 24 48 48 H 1.08999 * 109.46992 * 60.00239 * 26 25 24 49 49 H 1.08999 * 109.47302 * 59.99467 * 28 27 26 50 50 H 1.08998 * 109.47087 * 180.02562 * 28 27 26 51 51 H 1.09005 * 109.46731 * 300.00229 * 28 27 26 52 52 H 1.09002 * 109.47146 * 59.99863 * 29 27 26 53 53 H 1.08995 * 109.47354 * 179.97438 * 29 27 26 54 54 H 1.09005 * 109.47448 * 300.00032 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5653 1.2181 0.0054 5 6 4.2409 -0.0195 -0.0001 6 6 5.6502 -0.0705 0.0000 7 1 6.1591 -0.9385 -0.3923 8 6 6.3893 1.0063 0.5029 9 7 5.8100 1.8985 1.2650 10 14 8.2029 1.1697 0.0865 11 1 8.6144 0.0402 -0.7855 12 1 8.4340 2.4528 -0.6243 13 1 9.0022 1.1461 1.3378 14 6 3.4737 -1.2108 0.0004 15 7 4.1074 -2.4378 0.0004 16 6 4.8650 -2.6516 1.2775 17 6 4.7855 -4.1786 1.5824 18 6 4.0890 -4.7272 0.3681 19 1 4.8287 -4.8189 -0.4272 20 6 3.1416 -3.5224 0.0004 21 1 2.3793 -3.3672 0.7638 22 6 2.5323 -4.0885 -1.2721 23 6 2.2651 -5.5659 -0.8415 24 7 3.2093 -5.8571 0.2835 25 6 3.9568 -7.0970 0.0351 26 6 3.0106 -8.2941 0.1468 27 7 3.7583 -9.5341 -0.1010 28 6 4.7490 -9.7719 0.9573 29 6 2.8483 -10.6792 -0.2371 30 7 2.1523 -1.1511 0.0005 31 1 -0.3634 0.0003 1.0276 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6364 2.1399 0.0004 35 1 4.1135 2.1486 0.0098 36 1 6.3223 2.6446 1.6139 37 1 5.9044 -2.3486 1.1515 38 1 4.4043 -2.0838 2.0859 39 1 4.1966 -4.3624 2.4810 40 1 5.7839 -4.6050 1.6803 41 1 1.6024 -3.5782 -1.5230 42 1 3.2393 -4.0426 -2.1003 43 1 1.2351 -5.6762 -0.5026 44 1 2.4578 -6.2394 -1.6766 45 1 4.3883 -7.0669 -0.9654 46 1 4.7543 -7.1942 0.7719 47 1 2.5792 -8.3240 1.1473 48 1 2.2132 -8.1968 -0.5900 49 1 4.2412 -9.8559 1.9181 50 1 5.2885 -10.6957 0.7489 51 1 5.4526 -8.9400 0.9898 52 1 2.1702 -10.5070 -1.0730 53 1 3.4278 -11.5840 -0.4203 54 1 2.2716 -10.7962 0.6804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164930919.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:20 Heat of formation + Delta-G solvation = 58.873910 kcal Electronic energy + Delta-G solvation = -31366.603080 eV Core-core repulsion = 27531.172499 eV Total energy + Delta-G solvation = -3835.430581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.227 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.94956 -40.16900 -38.60718 -37.10442 -36.06906 -33.51833 -33.14152 -32.50796 -30.64564 -29.56307 -28.71854 -28.48857 -27.78987 -25.82383 -24.70614 -23.53106 -23.09752 -22.42381 -21.74780 -20.93928 -20.49327 -19.19651 -18.13793 -17.36540 -17.06618 -16.53610 -16.40159 -16.26312 -15.79848 -15.73303 -15.66328 -15.10598 -15.07065 -14.76715 -14.59961 -14.23086 -14.13975 -13.93060 -13.55289 -13.45822 -13.31790 -13.20625 -13.17899 -13.05722 -12.86111 -12.84062 -12.63232 -12.56453 -12.55570 -12.36441 -12.20656 -12.14454 -11.97660 -11.71296 -11.64635 -11.49404 -11.13148 -11.01733 -10.40839 -9.91915 -9.88443 -9.37427 -9.28545 -8.88390 -8.57461 -6.26893 0.76665 1.04208 1.39030 1.49332 1.53893 2.19332 2.41492 2.71933 3.00251 3.26376 3.46995 3.68552 3.78304 3.96274 4.02125 4.11498 4.14800 4.19005 4.25568 4.35399 4.43176 4.44582 4.47432 4.51081 4.59069 4.61354 4.65745 4.68769 4.70412 4.75699 4.82872 4.90907 4.94541 4.95533 4.96423 4.98791 5.01406 5.03369 5.06070 5.07989 5.13956 5.18124 5.23823 5.30146 5.32575 5.37184 5.71426 5.77182 5.83314 5.96463 6.07899 6.10083 6.14617 6.23805 6.40851 6.69746 6.81753 7.03948 7.76204 8.28244 Molecular weight = 344.23amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003069 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.359139 B = 9120.521040 C =10927.541605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.010 4.010 3 C -0.164 4.164 4 C -0.157 4.157 5 C 0.040 3.960 6 C -0.451 4.451 7 H 0.084 0.916 8 C 0.036 3.964 9 N -0.821 5.821 10 Si 0.978 3.022 11 H -0.258 1.258 12 H -0.267 1.267 13 H -0.265 1.265 14 C 0.162 3.838 15 N -0.433 5.433 16 C 0.060 3.940 17 C -0.094 4.094 18 C 0.069 3.931 19 H 0.034 0.966 20 C 0.073 3.927 21 H 0.045 0.955 22 C -0.110 4.110 23 C 0.058 3.942 24 N -0.516 5.516 25 C 0.061 3.939 26 C 0.069 3.931 27 N -0.562 5.562 28 C 0.021 3.979 29 C 0.026 3.974 30 N -0.498 5.498 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.289 0.711 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.077 0.923 49 H 0.027 0.973 50 H 0.078 0.922 51 H 0.067 0.933 52 H 0.071 0.929 53 H 0.078 0.922 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -16.951 -0.652 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.148 4.148 3 C -0.185 4.185 4 C -0.183 4.183 5 C 0.034 3.966 6 C -0.480 4.480 7 H 0.102 0.898 8 C -0.180 4.180 9 N -0.446 5.446 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.192 1.192 13 H -0.189 1.189 14 C -0.072 4.072 15 N -0.152 5.152 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.042 4.042 19 H 0.052 0.948 20 C -0.037 4.037 21 H 0.063 0.937 22 C -0.149 4.149 23 C -0.069 4.069 24 N -0.240 5.240 25 C -0.067 4.067 26 C -0.059 4.059 27 N -0.287 5.287 28 C -0.127 4.127 29 C -0.122 4.122 30 N -0.211 5.211 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.045 0.955 50 H 0.097 0.903 51 H 0.085 0.915 52 H 0.090 0.910 53 H 0.097 0.903 54 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.615 -17.557 -0.946 17.775 hybrid contribution 0.762 1.751 0.641 2.014 sum -1.853 -15.805 -0.305 15.917 Atomic orbital electron populations 1.20299 0.88287 1.02188 1.01538 1.20851 0.96886 0.87814 1.09262 1.21655 0.94783 0.98330 1.03734 1.21600 0.93461 0.98180 1.05060 1.18338 0.94962 0.90747 0.92550 1.19590 0.90878 1.02835 1.34740 0.89833 1.26764 1.05425 0.93843 0.91952 1.69866 1.40495 1.11270 1.23006 0.85207 0.76294 0.79374 0.79255 1.18108 1.19197 1.18928 1.19918 0.87857 0.90819 1.08619 1.61742 1.21393 0.99349 1.32707 1.23489 0.99544 0.95163 0.88470 1.21671 1.01342 0.92795 0.97425 1.21730 0.94547 0.90185 0.97745 0.94801 1.22518 0.93447 0.89522 0.98218 0.93656 1.22109 1.00605 0.95883 0.96269 1.23606 0.97537 0.93854 0.91853 1.62549 1.17532 1.01545 1.42383 1.22204 0.95804 0.88527 1.00182 1.21936 0.95434 0.88302 1.00278 1.61934 1.17278 1.03269 1.46199 1.22468 0.95574 1.02740 0.91950 1.22407 0.95976 0.93093 1.00751 1.66836 1.09381 1.30355 1.14546 0.92112 0.90592 0.92176 0.86093 0.86761 0.90012 0.89865 0.95973 0.90731 0.88814 0.91470 0.92092 0.89306 0.90728 0.94299 0.90783 0.94488 0.90470 0.95477 0.90329 0.91456 0.90995 0.90311 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.24 0.72 -1.55 16 2 C -0.01 -0.44 6.79 42.64 0.29 -0.15 16 3 C -0.16 -7.75 9.69 22.32 0.22 -7.53 16 4 C -0.16 -8.27 8.80 22.90 0.20 -8.07 16 5 C 0.04 2.16 5.49 -21.06 -0.12 2.04 16 6 C -0.45 -23.46 7.32 23.37 0.17 -23.29 16 7 H 0.08 4.32 6.88 -2.91 -0.02 4.30 16 8 C 0.04 1.73 5.18 85.25 0.44 2.17 16 9 N -0.82 -41.50 10.93 21.83 0.24 -41.26 16 10 Si 0.98 37.25 29.59 68.60 2.03 39.28 16 11 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 12 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 13 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 14 C 0.16 8.21 6.06 134.05 0.81 9.02 16 15 N -0.43 -19.26 4.79 -659.12 -3.15 -22.41 16 16 C 0.06 2.44 5.59 86.70 0.48 2.93 16 17 C -0.09 -2.95 6.85 30.75 0.21 -2.74 16 18 C 0.07 2.18 2.47 46.33 0.11 2.29 16 19 H 0.03 1.15 7.81 -2.39 -0.02 1.13 16 20 C 0.07 2.79 1.82 46.54 0.08 2.87 16 21 H 0.05 1.97 7.50 -2.39 -0.02 1.96 16 22 C -0.11 -3.65 6.84 31.38 0.21 -3.43 16 23 C 0.06 1.50 6.16 86.86 0.53 2.04 16 24 N -0.52 -13.93 5.17 -860.31 -4.45 -18.38 16 25 C 0.06 1.37 4.48 86.30 0.39 1.76 16 26 C 0.07 1.34 5.01 86.30 0.43 1.77 16 27 N -0.56 -10.01 5.02 -948.86 -4.76 -14.77 16 28 C 0.02 0.32 9.32 127.69 1.19 1.51 16 29 C 0.03 0.35 9.57 127.69 1.22 1.57 16 30 N -0.50 -24.26 8.47 -179.57 -1.52 -25.78 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 35 H 0.11 6.20 6.22 -2.91 -0.02 6.18 16 36 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 37 H 0.08 3.45 6.84 -2.39 -0.02 3.43 16 38 H 0.02 1.00 7.80 -2.39 -0.02 0.98 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.07 1.65 7.22 -2.39 -0.02 1.63 16 45 H 0.04 0.93 7.93 -2.38 -0.02 0.91 16 46 H 0.07 1.65 6.51 -2.38 -0.02 1.63 16 47 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 48 H 0.08 1.44 7.22 -2.39 -0.02 1.43 16 49 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 51 H 0.07 1.09 6.47 -2.38 -0.02 1.07 16 52 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 53 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 54 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 Total: -1.00 -60.49 411.46 -3.14 -63.63 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.86 Total: 36.48 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 7.61 Total: -16.79 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -13.65 Total: -122.60 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -60.49 -3.14 -63.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164930919.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.508 kcal (2) G-P(sol) polarization free energy of solvation -60.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds