Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38270 * 119.94203 * 269.72411 * 13 10 9 15 15 C 1.38158 * 120.08043 * 179.76428 * 14 13 10 16 16 C 1.38710 * 119.94973 * 0.51531 * 15 14 13 17 17 O 1.35927 * 120.05449 * 179.72359 * 16 15 14 18 18 C 1.42891 * 117.00281 * 0.02562 * 17 16 15 19 19 F 1.39898 * 109.47340 * 60.00280 * 18 17 16 20 20 F 1.39899 * 109.47382 * 180.02562 * 18 17 16 21 21 F 1.39904 * 109.47142 * 300.00230 * 18 17 16 22 22 C 1.38812 * 119.88366 * 359.73890 * 16 15 14 23 23 Cl 1.73599 * 120.03828 * 180.02562 * 22 16 15 24 24 C 1.38251 * 119.93900 * 90.00037 * 13 10 9 25 25 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08002 * 119.96147 * 359.97438 * 14 13 10 28 28 H 1.07991 * 120.02867 * 180.25373 * 15 14 13 29 29 H 1.08003 * 119.97998 * 359.95786 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 16 4.2075 -2.6363 0.0115 11 8 5.5885 -2.3025 -0.0182 12 8 3.6222 -3.4330 1.0322 13 6 3.8586 -3.4467 -1.5137 14 6 2.7829 -4.3104 -1.6060 15 6 2.5038 -4.9436 -2.8018 16 6 3.3102 -4.7207 -3.9081 17 8 3.0409 -5.3469 -5.0841 18 6 1.9109 -6.2211 -5.1097 19 9 0.7550 -5.4985 -4.7954 20 9 1.7806 -6.7777 -6.3866 21 9 2.0910 -7.2436 -4.1720 22 6 4.3929 -3.8573 -3.8121 23 17 5.4044 -3.5748 -5.1943 24 6 4.6644 -3.2222 -2.6144 25 1 -0.4851 0.8400 0.0004 26 1 3.8646 -0.3621 0.0055 27 1 2.1579 -4.4878 -0.7431 28 1 1.6609 -5.6149 -2.8740 29 1 5.5064 -2.5500 -2.5388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186783673.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = -239.651800 kcal Electronic energy + Delta-G solvation = -25932.048577 eV Core-core repulsion = 21172.959345 eV Total energy + Delta-G solvation = -4759.089231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.988 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.67020 -48.39680 -48.24899 -40.46412 -37.89636 -36.54966 -36.33232 -34.96719 -34.89061 -31.68839 -31.04063 -30.57143 -26.33691 -24.37933 -23.22168 -23.15590 -20.02234 -19.45587 -19.38124 -18.96833 -18.52443 -17.64369 -16.86900 -16.41118 -15.75424 -15.54883 -15.16353 -15.03846 -14.96978 -14.78813 -14.67953 -14.66062 -14.38159 -14.22887 -13.83579 -13.52355 -13.39801 -12.98732 -12.94735 -12.75587 -11.67968 -11.61689 -11.54218 -11.28117 -11.25898 -11.17028 -11.10330 -10.57983 -10.53781 -10.24678 -10.18230 -9.15187 -8.81502 -8.61434 -6.59651 -4.06543 0.65188 1.02080 1.16285 1.26373 1.95734 2.57102 3.02494 3.05494 3.09932 3.18324 3.51400 3.74982 3.95948 4.02931 4.41367 4.47193 4.53327 4.89864 4.99632 5.19828 5.26283 5.43471 5.67394 5.85056 6.08042 6.18192 6.57371 6.68177 7.42942 8.09805 8.72754 8.85744 10.49805 Molecular weight = 344.99amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.004142 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.413175 B = 6758.202118 C = 7273.666961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.050 3.950 3 Si 0.884 3.116 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.276 4.276 8 H 0.124 0.876 9 N -0.968 5.968 10 S 2.613 3.387 11 O -0.996 6.996 12 O -0.957 6.957 13 C -0.664 4.664 14 C 0.030 3.970 15 C -0.202 4.202 16 C 0.147 3.853 17 O -0.303 6.303 18 C 0.604 3.396 19 F -0.159 7.159 20 F -0.131 7.131 21 F -0.163 7.163 22 C -0.068 4.068 23 Cl -0.051 7.051 24 C 0.017 3.983 25 H 0.279 0.721 26 H 0.392 0.608 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -8.264 -9.794 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.417 4.417 8 H 0.141 0.859 9 N -0.719 5.719 10 S 2.703 3.297 11 O -0.985 6.985 12 O -0.947 6.947 13 C -0.743 4.743 14 C 0.011 3.989 15 C -0.221 4.221 16 C 0.104 3.896 17 O -0.223 6.223 18 C 0.513 3.487 19 F -0.141 7.141 20 F -0.112 7.112 21 F -0.145 7.145 22 C -0.096 4.096 23 Cl -0.022 7.022 24 C -0.003 4.003 25 H 0.089 0.911 26 H 0.226 0.774 27 H 0.174 0.826 28 H 0.163 0.837 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.538 -8.786 -9.511 13.720 hybrid contribution -0.155 0.906 -1.126 1.453 sum 4.382 -7.881 -10.637 13.944 Atomic orbital electron populations 1.69713 1.05837 1.28490 1.45785 1.25163 0.95439 0.98729 0.96609 0.86536 0.80260 0.82953 0.79305 1.19298 1.19907 1.18709 1.19118 0.78440 0.97070 1.47039 0.85874 1.52426 1.15625 1.21526 1.82351 1.06940 0.73031 0.73415 0.76330 1.93435 1.33538 1.83636 1.87862 1.93502 1.78298 1.69035 1.53893 1.32301 1.04443 1.12930 1.24590 1.20896 0.92475 0.88570 0.96942 1.21623 1.01640 1.05719 0.93116 1.18458 0.94853 0.93112 0.83217 1.86466 1.44469 1.56824 1.34492 1.19341 0.77483 0.76956 0.74894 1.93342 1.50529 1.77735 1.92525 1.93309 1.95110 1.84341 1.38440 1.93315 1.94791 1.60793 1.65610 1.20151 0.95127 1.03063 0.91237 1.98369 1.67102 1.95386 1.41381 1.20709 0.97004 0.94302 0.88258 0.91057 0.77371 0.82598 0.83695 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.12 13.97 55.49 0.78 -21.34 15 2 C 0.05 1.22 5.50 -17.43 -0.10 1.13 15 3 Si 0.88 18.13 27.74 -169.99 -4.72 13.41 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.26 -5.06 6.51 56.52 0.37 -4.69 15 7 C -0.28 -6.50 10.12 -15.06 -0.15 -6.66 15 8 H 0.12 3.00 8.05 -52.49 -0.42 2.58 15 9 N -0.97 -20.22 5.55 31.50 0.17 -20.04 15 10 S 2.61 51.29 5.70 -107.50 -0.61 50.68 15 11 O -1.00 -20.44 17.28 -57.17 -0.99 -21.43 15 12 O -0.96 -21.03 16.97 -57.17 -0.97 -22.00 15 13 C -0.66 -11.56 5.89 -39.56 -0.23 -11.80 15 14 C 0.03 0.50 9.51 -39.60 -0.38 0.12 15 15 C -0.20 -2.98 8.26 -39.44 -0.33 -3.31 15 16 C 0.15 2.20 6.48 -39.19 -0.25 1.95 15 17 O -0.30 -4.09 9.83 -19.51 -0.19 -4.28 15 18 C 0.60 7.03 3.42 101.05 0.35 7.38 15 19 F -0.16 -1.93 15.56 2.25 0.04 -1.90 15 20 F -0.13 -1.39 17.53 2.25 0.04 -1.35 15 21 F -0.16 -1.84 15.56 2.25 0.04 -1.81 15 22 C -0.07 -1.04 6.33 -39.36 -0.25 -1.29 15 23 Cl -0.05 -0.70 28.50 -51.86 -1.48 -2.18 15 24 C 0.02 0.27 9.30 -39.57 -0.37 -0.10 15 25 H 0.28 6.70 8.31 -40.82 -0.34 6.36 15 26 H 0.39 7.66 5.88 -34.47 -0.20 7.45 15 27 H 0.16 2.43 7.60 -52.49 -0.40 2.03 15 28 H 0.15 1.85 5.10 -52.49 -0.27 1.58 15 29 H 0.16 2.29 7.61 -52.48 -0.40 1.89 15 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -27.37 302.30 -5.91 -33.28 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -0.86 Total: 6.98 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.71 Total: -12.58 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.95 Total: -41.39 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -2.15 Total: -47.71 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.11 Total: -5.06 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -4.72 Total: 13.41 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.61 Total: 50.68 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.37 -5.91 -33.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186783673.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.372 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds