Wall clock time and date at job start Wed Apr 1 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38270 * 119.94203 * 269.72411 * 13 10 9 15 15 C 1.38158 * 120.08043 * 179.76428 * 14 13 10 16 16 C 1.38710 * 119.94973 * 0.51531 * 15 14 13 17 17 O 1.35927 * 120.05449 * 179.72359 * 16 15 14 18 18 C 1.42891 * 117.00281 * 0.02562 * 17 16 15 19 19 F 1.39898 * 109.47340 * 60.00280 * 18 17 16 20 20 F 1.39899 * 109.47382 * 180.02562 * 18 17 16 21 21 F 1.39904 * 109.47142 * 300.00230 * 18 17 16 22 22 C 1.38812 * 119.88366 * 359.73890 * 16 15 14 23 23 Cl 1.73599 * 120.03828 * 180.02562 * 22 16 15 24 24 C 1.38251 * 119.93900 * 90.00037 * 13 10 9 25 25 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08002 * 119.96147 * 359.97438 * 14 13 10 28 28 H 1.07991 * 120.02867 * 180.25373 * 15 14 13 29 29 H 1.08003 * 119.97998 * 359.95786 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 16 4.2075 -2.6363 0.0115 11 8 5.5885 -2.3025 -0.0182 12 8 3.6222 -3.4330 1.0322 13 6 3.8586 -3.4467 -1.5137 14 6 2.7829 -4.3104 -1.6060 15 6 2.5038 -4.9436 -2.8018 16 6 3.3102 -4.7207 -3.9081 17 8 3.0409 -5.3469 -5.0841 18 6 1.9109 -6.2211 -5.1097 19 9 0.7550 -5.4985 -4.7954 20 9 1.7806 -6.7777 -6.3866 21 9 2.0910 -7.2436 -4.1720 22 6 4.3929 -3.8573 -3.8121 23 17 5.4044 -3.5748 -5.1943 24 6 4.6644 -3.2222 -2.6144 25 1 -0.4851 0.8400 0.0004 26 1 3.8646 -0.3621 0.0055 27 1 2.1579 -4.4878 -0.7431 28 1 1.6609 -5.6149 -2.8740 29 1 5.5064 -2.5500 -2.5388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186783673.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:08 Heat of formation + Delta-G solvation = -258.629972 kcal Electronic energy + Delta-G solvation = -25932.871532 eV Core-core repulsion = 21172.959345 eV Total energy + Delta-G solvation = -4759.912187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.988 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.61595 -49.31501 -49.20689 -41.66708 -39.12806 -38.17322 -37.69798 -36.79769 -36.56843 -33.37923 -32.32404 -31.89175 -27.40788 -26.14151 -24.50163 -24.41234 -21.16365 -20.87378 -20.34102 -20.28283 -20.15076 -19.14032 -18.22471 -17.93627 -17.08748 -16.63214 -16.58010 -16.39368 -16.08696 -15.90607 -15.79087 -15.64860 -15.60857 -15.32679 -15.07963 -14.95210 -14.65054 -14.57013 -14.31019 -14.09730 -13.25864 -13.10090 -13.07277 -12.89889 -12.86309 -12.78289 -12.46237 -12.20873 -12.12598 -11.93216 -11.74163 -10.45808 -10.35753 -10.06838 -8.28885 -5.92666 -0.71425 -0.37490 -0.25033 0.13359 0.76521 1.41367 1.42103 1.48412 1.56389 1.84183 2.32568 2.38688 2.53371 2.77727 2.84920 3.13758 3.20945 3.27668 3.51411 3.87518 3.96232 4.15512 4.28884 4.57045 4.73799 4.87363 5.00261 5.29262 5.76118 6.36376 7.00956 7.17143 8.85356 Molecular weight = 344.99amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.004142 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.413175 B = 6758.202118 C = 7273.666961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.001 4.001 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.305 4.305 8 H 0.100 0.900 9 N -0.993 5.993 10 S 2.693 3.307 11 O -0.989 6.989 12 O -0.980 6.980 13 C -0.678 4.678 14 C 0.025 3.975 15 C -0.200 4.200 16 C 0.160 3.840 17 O -0.304 6.304 18 C 0.609 3.391 19 F -0.161 7.161 20 F -0.121 7.121 21 F -0.158 7.158 22 C -0.074 4.074 23 Cl -0.031 7.031 24 C 0.020 3.980 25 H 0.274 0.726 26 H 0.400 0.600 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -9.655 -11.414 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.753 3.247 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.438 4.438 8 H 0.118 0.882 9 N -0.748 5.748 10 S 2.782 3.218 11 O -0.979 6.979 12 O -0.971 6.971 13 C -0.763 4.763 14 C 0.006 3.994 15 C -0.219 4.219 16 C 0.115 3.885 17 O -0.223 6.223 18 C 0.518 3.482 19 F -0.143 7.143 20 F -0.103 7.103 21 F -0.140 7.140 22 C -0.102 4.102 23 Cl -0.002 7.002 24 C 0.000 4.000 25 H 0.083 0.917 26 H 0.236 0.764 27 H 0.177 0.823 28 H 0.183 0.817 29 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.845 -10.076 -11.085 16.470 hybrid contribution -0.515 0.835 -0.829 1.284 sum 6.329 -9.241 -11.914 16.353 Atomic orbital electron populations 1.69822 1.07245 1.28523 1.51698 1.25707 0.95978 1.01523 0.97040 0.85807 0.79766 0.79455 0.79624 1.18587 1.20712 1.16676 1.18749 0.79212 0.96277 1.49556 0.88191 1.51636 1.14644 1.21586 1.86953 1.02239 0.71903 0.72614 0.75059 1.93489 1.32392 1.84031 1.87985 1.93515 1.78879 1.69732 1.54945 1.31396 1.06764 1.15293 1.22893 1.21023 0.91956 0.88424 0.97996 1.21777 1.02155 1.05627 0.92335 1.18560 0.94210 0.92182 0.83539 1.86468 1.45208 1.56893 1.33715 1.19246 0.76881 0.76722 0.75309 1.93350 1.50499 1.77850 1.92569 1.93339 1.94971 1.84079 1.37871 1.93331 1.94717 1.60451 1.65488 1.20164 0.95544 1.02824 0.91697 1.98383 1.66455 1.95265 1.40130 1.20893 0.96951 0.94150 0.87997 0.91680 0.76392 0.82319 0.81663 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.41 13.97 21.65 0.30 -51.11 15 2 C 0.00 -0.05 5.50 84.86 0.47 0.42 15 3 Si 0.93 38.07 27.74 68.60 1.90 39.97 15 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 15 6 H -0.24 -8.93 6.51 99.48 0.65 -8.28 15 7 C -0.31 -14.90 10.12 84.04 0.85 -14.05 15 8 H 0.10 5.16 8.05 -2.91 -0.02 5.14 15 9 N -0.99 -41.04 5.55 -54.26 -0.30 -41.34 15 10 S 2.69 100.68 5.70 -56.49 -0.32 100.36 15 11 O -0.99 -37.33 17.28 -128.00 -2.21 -39.54 15 12 O -0.98 -41.86 16.97 -128.00 -2.17 -44.03 15 13 C -0.68 -22.10 5.89 22.28 0.13 -21.96 15 14 C 0.03 0.78 9.51 22.26 0.21 0.99 15 15 C -0.20 -5.39 8.26 22.36 0.18 -5.21 15 16 C 0.16 4.27 6.48 22.52 0.15 4.42 15 17 O -0.30 -7.21 9.83 -92.72 -0.91 -8.12 15 18 C 0.61 12.40 3.42 113.37 0.39 12.79 15 19 F -0.16 -3.49 15.56 44.97 0.70 -2.79 15 20 F -0.12 -2.24 17.53 44.97 0.79 -1.45 15 21 F -0.16 -3.09 15.56 44.97 0.70 -2.39 15 22 C -0.07 -2.03 6.33 22.41 0.14 -1.88 15 23 Cl -0.03 -0.75 28.50 -2.72 -0.08 -0.83 15 24 C 0.02 0.57 9.30 22.28 0.21 0.78 15 25 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 26 H 0.40 15.20 5.88 -96.74 -0.57 14.63 15 27 H 0.16 4.81 7.60 -2.91 -0.02 4.79 15 28 H 0.17 3.75 5.10 -2.92 -0.01 3.74 15 29 H 0.18 4.41 7.61 -2.91 -0.02 4.39 15 Total: -1.00 -59.33 302.30 1.76 -57.57 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.64 Total: 17.40 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 2.73 Total: -23.71 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: 0.00 Total: -92.44 kcal Atomic # 8 Polarization: -86.40 SS G_CDS: -5.30 Total: -91.69 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 2.19 Total: -6.64 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Atomic # 16 Polarization: 100.68 SS G_CDS: -0.32 Total: 100.36 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -59.33 1.76 -57.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186783673.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.060 kcal (2) G-P(sol) polarization free energy of solvation -59.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds