Wall clock time and date at job start Wed Apr 1 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00130 * 2 1 4 4 H 1.48507 * 109.47114 * 270.00316 * 3 2 1 5 5 H 1.48501 * 109.47139 * 29.99773 * 3 2 1 6 6 H 1.48496 * 109.47367 * 149.99852 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00530 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40067 * 293.54126 * 9 7 2 11 11 O 1.42099 * 106.40399 * 66.45866 * 9 7 2 12 12 N 1.65602 * 107.22234 * 180.02562 * 9 7 2 13 13 C 1.39642 * 120.00002 * 67.56469 * 12 9 7 14 14 C 1.36623 * 120.38390 * 327.56912 * 13 12 9 15 15 C 1.40479 * 119.62276 * 179.77310 * 14 13 12 16 16 Br 1.89096 * 119.82737 * 180.27840 * 15 14 13 17 17 C 1.35001 * 120.34517 * 0.48266 * 15 14 13 18 18 N 1.36766 * 120.72957 * 359.77176 * 17 15 14 19 19 C 1.36761 * 132.52163 * 179.97438 * 18 17 15 20 20 C 1.35174 * 107.17409 * 180.02562 * 19 18 17 21 21 N 1.33450 * 108.58081 * 359.97438 * 20 19 18 22 22 C 1.32533 * 109.14878 * 0.02562 * 21 20 19 23 23 H 0.96999 * 119.99803 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99408 * 247.57217 * 12 9 7 25 25 H 1.07999 * 120.19064 * 359.97423 * 14 13 12 26 26 H 1.08001 * 119.63358 * 179.79095 * 17 15 14 27 27 H 1.08000 * 126.41712 * 0.02653 * 19 18 17 28 28 H 1.08002 * 125.70683 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0019 10 8 0.4510 -2.7961 1.2475 11 8 0.4519 -2.7945 -1.2519 12 7 2.2483 -3.9354 -0.0016 13 6 3.0604 -4.1349 1.1168 14 6 3.4452 -3.0757 1.8892 15 6 4.2584 -3.2953 3.0134 16 35 4.7878 -1.8345 4.0911 17 6 4.6673 -4.5433 3.3261 18 7 4.2951 -5.6133 2.5598 19 6 4.5621 -6.9516 2.6490 20 6 3.9323 -7.5540 1.6157 21 7 3.2931 -6.6222 0.9058 22 6 3.4990 -5.4360 1.4600 23 1 -0.4850 0.8400 0.0004 24 1 2.3430 -4.5087 -0.7783 25 1 3.1232 -2.0757 1.6389 26 1 5.2951 -4.6986 4.1911 27 1 5.1636 -7.4365 3.4037 28 1 3.9439 -8.6124 1.4011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:56 Heat of formation + Delta-G solvation = -16.573630 kcal Electronic energy + Delta-G solvation = -19948.923112 eV Core-core repulsion = 16559.229081 eV Total energy + Delta-G solvation = -3389.694031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.89741 -39.07509 -37.59694 -36.90010 -36.35983 -35.27902 -33.69511 -31.94642 -30.21573 -29.33419 -28.35024 -24.71366 -23.78519 -22.66417 -21.16540 -19.74124 -19.65351 -18.60932 -17.76379 -17.36288 -17.10284 -16.98303 -16.44710 -16.03025 -15.72814 -15.09213 -14.66499 -14.08266 -14.00429 -13.81134 -13.65856 -13.27710 -13.08671 -13.00223 -12.69455 -12.62425 -12.51916 -12.26313 -11.92593 -11.44385 -11.26463 -11.24296 -11.09362 -10.70059 -9.71952 -8.83953 -8.69413 -7.56830 -0.43450 -0.03564 0.03017 0.25482 1.36536 1.37024 1.54289 1.65972 1.83244 2.18011 2.26666 2.53059 2.57362 3.04326 3.42017 3.55736 3.65506 3.89771 4.00088 4.23826 4.44626 4.48514 4.62522 4.87060 4.93247 5.19872 5.29902 5.57200 5.80776 5.89786 5.94583 6.70605 6.77979 8.16525 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.006728 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.307860 B = 4160.636874 C = 6326.712223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.238 1.238 7 C -1.028 5.028 8 H 0.132 0.868 9 S 2.702 3.298 10 O -1.022 7.022 11 O -1.028 7.028 12 N -1.044 6.044 13 C 0.219 3.781 14 C -0.183 4.183 15 C -0.088 4.088 16 Br 0.006 6.994 17 C 0.077 3.923 18 N -0.351 5.351 19 C -0.062 4.062 20 C 0.011 3.989 21 N -0.513 5.513 22 C 0.176 3.824 23 H 0.302 0.698 24 H 0.428 0.572 25 H 0.163 0.837 26 H 0.222 0.778 27 H 0.241 0.759 28 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.469 -7.509 11.043 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.803 3.197 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.160 1.160 7 C -1.163 5.163 8 H 0.150 0.850 9 S 2.804 3.196 10 O -1.012 7.012 11 O -1.019 7.019 12 N -0.788 5.788 13 C 0.116 3.884 14 C -0.213 4.213 15 C -0.171 4.171 16 Br 0.090 6.910 17 C -0.047 4.047 18 N -0.024 5.024 19 C -0.193 4.193 20 C -0.140 4.140 21 N -0.234 5.234 22 C -0.070 4.070 23 H 0.113 0.887 24 H 0.264 0.736 25 H 0.180 0.820 26 H 0.239 0.761 27 H 0.257 0.743 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 14.990 -7.159 10.832 19.831 hybrid contribution 0.442 0.607 -0.362 0.833 sum 15.432 -6.552 10.470 19.766 Atomic orbital electron populations 1.69975 1.08856 1.32732 1.40221 1.25969 0.95300 1.05079 0.87190 0.85177 0.79682 0.74560 0.80242 1.17983 1.18588 1.16025 1.30691 1.07209 1.10740 1.67612 0.85016 1.00808 0.72536 0.74203 0.72011 1.93355 1.73612 1.87732 1.46494 1.93345 1.73968 1.87977 1.46564 1.53554 1.52220 1.51100 1.21886 1.16078 0.93378 0.89317 0.89583 1.21543 1.01706 1.00473 0.97557 1.20842 1.04069 0.93894 0.98297 1.96735 1.89502 1.40154 1.64560 1.21960 1.01435 0.83216 0.98122 1.42885 1.32103 1.08351 1.19046 1.23653 1.10214 0.78812 1.06592 1.23330 0.96857 1.00811 0.93028 1.70638 1.25005 0.97363 1.30403 1.20482 1.01262 0.94232 0.91020 0.88749 0.73593 0.82005 0.76127 0.74283 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.40 13.19 21.45 0.28 -51.12 15 2 C 0.08 4.23 5.46 84.65 0.46 4.69 15 3 Si 0.99 39.36 29.54 68.60 2.03 41.38 15 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 6 H -0.24 -8.66 7.11 99.48 0.71 -7.96 15 7 C -1.03 -54.56 7.59 67.73 0.51 -54.04 15 8 H 0.13 6.22 6.93 -2.91 -0.02 6.20 15 9 S 2.70 148.58 4.63 -56.49 -0.26 148.32 15 10 O -1.02 -61.95 17.42 -128.00 -2.23 -64.18 15 11 O -1.03 -62.50 18.02 -128.00 -2.31 -64.80 15 12 N -1.04 -46.53 5.82 -51.11 -0.30 -46.83 15 13 C 0.22 8.93 6.23 38.33 0.24 9.17 15 14 C -0.18 -7.13 8.70 22.44 0.20 -6.93 15 15 C -0.09 -2.59 6.18 22.07 0.14 -2.45 15 16 Br 0.01 0.15 33.68 -20.37 -0.69 -0.54 15 17 C 0.08 1.75 10.65 83.18 0.89 2.63 15 18 N -0.35 -9.17 2.95 -351.49 -1.04 -10.20 15 19 C -0.06 -1.13 11.76 83.22 0.98 -0.15 15 20 C 0.01 0.24 11.83 83.74 0.99 1.24 15 21 N -0.51 -17.43 11.31 -193.99 -2.19 -19.63 15 22 C 0.18 6.28 7.74 134.32 1.04 7.32 15 23 H 0.30 15.66 8.31 -92.71 -0.77 14.89 15 24 H 0.43 17.24 8.95 -96.75 -0.87 16.38 15 25 H 0.16 7.00 4.50 -2.91 -0.01 6.99 15 26 H 0.22 2.63 8.06 -2.91 -0.02 2.61 15 27 H 0.24 1.52 8.06 -2.91 -0.02 1.49 15 28 H 0.22 3.00 8.06 -2.91 -0.02 2.98 15 Total: -1.00 -79.87 286.88 -0.88 -80.75 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.38 Total: 25.37 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 5.44 Total: -38.53 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -3.25 Total: -127.78 kcal Atomic # 8 Polarization: -124.44 SS G_CDS: -4.54 Total: -128.98 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 148.58 SS G_CDS: -0.26 Total: 148.32 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.69 Total: -0.54 kcal Total: -79.87 -0.88 -80.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.179 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds