Wall clock time and date at job start Wed Apr 1 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00291 * 2 1 4 4 H 1.48503 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47056 * 299.99856 * 3 2 1 6 6 H 1.48494 * 109.47251 * 59.99724 * 3 2 1 7 7 C 1.37884 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99942 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40478 * 66.45771 * 9 7 2 11 11 O 1.42095 * 106.40169 * 293.53351 * 9 7 2 12 12 N 1.65600 * 107.21811 * 179.97438 * 9 7 2 13 13 C 1.40152 * 120.00161 * 64.99344 * 12 9 7 14 14 C 1.40945 * 119.91925 * 45.00679 * 13 12 9 15 15 C 1.35939 * 119.68478 * 179.97438 * 14 13 12 16 16 C 1.40932 * 119.45351 * 0.02562 * 15 14 13 17 17 N 1.32654 * 132.21818 * 179.97438 * 16 15 14 18 18 C 1.33502 * 109.14838 * 180.02562 * 17 16 15 19 19 C 1.35226 * 108.59816 * 0.02562 * 18 17 16 20 20 Br 1.89099 * 126.41480 * 180.02562 * 19 18 17 21 21 N 1.36782 * 107.17681 * 359.97438 * 19 18 17 22 22 C 1.35512 * 119.92659 * 225.02503 * 13 12 9 23 23 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00525 * 245.00254 * 12 9 7 25 25 H 1.08005 * 120.16000 * 359.71797 * 14 13 12 26 26 H 1.08002 * 120.27032 * 179.97438 * 15 14 13 27 27 H 1.08007 * 125.70207 * 180.02562 * 18 17 16 28 28 H 1.07994 * 119.74901 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 3.1006 -4.1014 1.1005 14 6 2.5796 -4.0434 2.4088 15 6 3.4107 -4.2055 3.4722 16 6 4.7844 -4.4291 3.2504 17 7 5.8024 -4.6166 4.0800 18 6 6.9202 -4.7865 3.3702 19 6 6.6129 -4.7056 2.0558 20 35 7.8185 -4.8741 0.6087 21 7 5.2666 -4.4803 1.9688 22 6 4.4240 -4.3169 0.9037 23 1 -0.4850 0.8401 0.0004 24 1 2.3170 -4.5326 -0.7608 25 1 1.5257 -3.8668 2.5659 26 1 3.0217 -4.1624 4.4788 27 1 7.9054 -4.9595 3.7777 28 1 4.8162 -4.3602 -0.1015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939413.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:37 Heat of formation + Delta-G solvation = 6.656464 kcal Electronic energy + Delta-G solvation = -19686.669764 eV Core-core repulsion = 16297.983066 eV Total energy + Delta-G solvation = -3388.686698 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.78095 -38.12535 -35.56992 -34.34571 -34.13445 -33.63564 -33.23836 -31.52394 -28.50402 -27.99675 -26.32640 -23.63722 -22.50042 -21.62004 -19.40008 -18.27979 -17.73469 -17.09848 -16.64065 -16.05066 -15.91575 -15.08536 -14.68270 -14.34108 -14.22775 -13.93039 -13.70267 -13.13517 -12.29279 -12.16343 -11.90679 -11.52736 -11.48120 -11.34256 -10.98779 -10.90201 -10.72200 -10.68214 -10.58825 -10.36866 -10.10778 -9.98769 -9.41156 -9.07137 -8.35221 -7.75328 -6.88566 -5.52813 0.80370 1.14255 1.16567 1.85325 2.67814 2.71705 2.96696 3.06004 3.13161 3.56068 3.90611 4.20487 4.27494 4.47793 4.51869 4.82805 4.99025 5.27425 5.33936 5.45096 5.75041 5.98608 6.07575 6.17467 6.41976 6.45415 6.60676 6.93803 7.14897 7.39983 7.72588 7.77116 8.71190 10.05878 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.004120 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.812769 B = 6794.661560 C = 7237.162582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.135 3.865 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.268 1.268 7 C -1.016 5.016 8 H 0.104 0.896 9 S 2.703 3.297 10 O -0.989 6.989 11 O -0.991 6.991 12 N -1.066 6.066 13 C 0.181 3.819 14 C -0.104 4.104 15 C -0.071 4.071 16 C 0.238 3.762 17 N -0.490 5.490 18 C 0.079 3.921 19 C -0.094 4.094 20 Br 0.014 6.986 21 N -0.329 5.329 22 C 0.004 3.996 23 H 0.293 0.707 24 H 0.416 0.584 25 H 0.186 0.814 26 H 0.162 0.838 27 H 0.186 0.814 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.438 -9.155 2.275 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.193 1.193 7 C -1.150 5.150 8 H 0.122 0.878 9 S 2.804 3.196 10 O -0.980 6.980 11 O -0.980 6.980 12 N -0.810 5.810 13 C 0.081 3.919 14 C -0.129 4.129 15 C -0.092 4.092 16 C -0.006 4.006 17 N -0.210 5.210 18 C -0.079 4.079 19 C -0.286 4.286 20 Br 0.097 6.903 21 N -0.001 5.001 22 C -0.124 4.124 23 H 0.104 0.896 24 H 0.251 0.749 25 H 0.203 0.797 26 H 0.180 0.820 27 H 0.203 0.797 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.632 -9.182 2.627 15.836 hybrid contribution 0.951 1.027 -1.193 1.839 sum 13.583 -8.155 1.434 15.908 Atomic orbital electron populations 1.69875 1.06732 1.31034 1.39428 1.24723 0.94517 1.00861 0.88254 0.86091 0.80483 0.80088 0.78797 1.18555 1.19416 1.19338 1.30384 1.06101 1.10920 1.67562 0.87777 1.01069 0.72004 0.73215 0.73281 1.93415 1.72145 1.87143 1.45254 1.93304 1.72354 1.87070 1.45315 1.54261 1.52859 1.49749 1.24141 1.16655 0.87978 0.98991 0.88290 1.22220 1.04147 0.96746 0.89819 1.20233 0.86887 1.00872 1.01170 1.21043 0.95833 1.04831 0.78927 1.70905 0.97038 1.22838 1.30241 1.22377 0.98492 1.00100 0.86927 1.22645 0.83405 1.26554 0.96014 1.96701 1.54401 1.97494 1.41738 1.42341 1.06228 1.43386 1.08107 1.21377 0.89160 1.09884 0.91959 0.89621 0.74934 0.79748 0.82008 0.79656 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.25 13.19 55.43 0.73 -22.52 15 2 C 0.14 3.57 5.46 -17.82 -0.10 3.47 15 3 Si 0.92 19.83 29.54 -169.99 -5.02 14.80 15 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 7 C -1.02 -26.12 9.68 30.60 0.30 -25.82 15 8 H 0.10 2.51 7.81 -52.48 -0.41 2.10 15 9 S 2.70 64.56 4.95 -107.50 -0.53 64.03 15 10 O -0.99 -26.48 18.02 -57.17 -1.03 -27.51 15 11 O -0.99 -25.16 14.94 -57.17 -0.85 -26.01 15 12 N -1.07 -18.75 5.77 32.27 0.19 -18.57 15 13 C 0.18 3.04 6.17 -84.00 -0.52 2.52 15 14 C -0.10 -1.73 9.18 -39.38 -0.36 -2.10 15 15 C -0.07 -1.07 10.10 -39.39 -0.40 -1.47 15 16 C 0.24 3.83 7.80 -156.01 -1.22 2.61 15 17 N -0.49 -7.75 11.32 -12.75 -0.14 -7.89 15 18 C 0.08 1.06 11.80 -17.90 -0.21 0.85 15 19 C -0.09 -1.32 7.47 -16.42 -0.12 -1.44 15 20 Br 0.01 0.16 34.05 -68.01 -2.32 -2.15 15 21 N -0.33 -5.11 2.95 -60.67 -0.18 -5.29 15 22 C 0.00 0.06 10.81 -16.31 -0.18 -0.12 15 23 H 0.29 7.27 8.31 -40.82 -0.34 6.93 15 24 H 0.42 5.90 8.96 -34.48 -0.31 5.59 15 25 H 0.19 3.28 5.62 -52.48 -0.29 2.99 15 26 H 0.16 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.19 1.83 8.06 -52.48 -0.42 1.41 15 28 H 0.17 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 289.40 15.07 4.36 4.36 Total: -1.00 -32.38 289.40 -9.02 -41.40 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -1.42 Total: 6.84 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -2.81 Total: -21.48 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.59 Total: -54.27 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.88 Total: -53.52 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 64.56 SS G_CDS: -0.53 Total: 64.03 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -2.32 Total: -2.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.38 -9.02 -41.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939413.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.055 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds