Wall clock time and date at job start Wed Apr 1 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00291 * 2 1 4 4 H 1.48503 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47056 * 299.99856 * 3 2 1 6 6 H 1.48494 * 109.47251 * 59.99724 * 3 2 1 7 7 C 1.37884 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99942 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40478 * 66.45771 * 9 7 2 11 11 O 1.42095 * 106.40169 * 293.53351 * 9 7 2 12 12 N 1.65600 * 107.21811 * 179.97438 * 9 7 2 13 13 C 1.40152 * 120.00161 * 64.99344 * 12 9 7 14 14 C 1.40945 * 119.91925 * 45.00679 * 13 12 9 15 15 C 1.35939 * 119.68478 * 179.97438 * 14 13 12 16 16 C 1.40932 * 119.45351 * 0.02562 * 15 14 13 17 17 N 1.32654 * 132.21818 * 179.97438 * 16 15 14 18 18 C 1.33502 * 109.14838 * 180.02562 * 17 16 15 19 19 C 1.35226 * 108.59816 * 0.02562 * 18 17 16 20 20 Br 1.89099 * 126.41480 * 180.02562 * 19 18 17 21 21 N 1.36782 * 107.17681 * 359.97438 * 19 18 17 22 22 C 1.35512 * 119.92659 * 225.02503 * 13 12 9 23 23 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00525 * 245.00254 * 12 9 7 25 25 H 1.08005 * 120.16000 * 359.71797 * 14 13 12 26 26 H 1.08002 * 120.27032 * 179.97438 * 15 14 13 27 27 H 1.08007 * 125.70207 * 180.02562 * 18 17 16 28 28 H 1.07994 * 119.74901 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 3.1006 -4.1014 1.1005 14 6 2.5796 -4.0434 2.4088 15 6 3.4107 -4.2055 3.4722 16 6 4.7844 -4.4291 3.2504 17 7 5.8024 -4.6166 4.0800 18 6 6.9202 -4.7865 3.3702 19 6 6.6129 -4.7056 2.0558 20 35 7.8185 -4.8741 0.6087 21 7 5.2666 -4.4803 1.9688 22 6 4.4240 -4.3169 0.9037 23 1 -0.4850 0.8401 0.0004 24 1 2.3170 -4.5326 -0.7608 25 1 1.5257 -3.8668 2.5659 26 1 3.0217 -4.1624 4.4788 27 1 7.9054 -4.9595 3.7777 28 1 4.8162 -4.3602 -0.1015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939413.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:36 Heat of formation + Delta-G solvation = -16.320987 kcal Electronic energy + Delta-G solvation = -19687.666141 eV Core-core repulsion = 16297.983066 eV Total energy + Delta-G solvation = -3389.683075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.94123 -39.40168 -37.52227 -36.30253 -35.52996 -35.14951 -34.82554 -32.57089 -29.75475 -29.15107 -28.31376 -24.83692 -23.75520 -22.75925 -21.20612 -19.84695 -19.09655 -18.70015 -18.16916 -17.44661 -17.21139 -16.86445 -16.00983 -15.88732 -15.73440 -15.32492 -14.96484 -14.41330 -14.05037 -13.57312 -13.43348 -13.19025 -13.06904 -12.71796 -12.62463 -12.61563 -12.34629 -12.21807 -11.92940 -11.87619 -11.35821 -11.29685 -11.17920 -10.93196 -9.60164 -8.93821 -8.80126 -7.54558 -0.42445 -0.11659 0.08309 0.19102 1.30055 1.32134 1.47528 1.51348 1.58560 2.16200 2.34644 2.53047 2.66289 3.12072 3.36205 3.53505 3.63752 3.83452 3.96726 4.26330 4.40748 4.57263 4.73034 4.94825 5.06330 5.23862 5.30447 5.36482 5.73536 5.82840 6.07040 6.57976 6.73852 8.14972 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.004120 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.812769 B = 6794.661560 C = 7237.162582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.080 3.920 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.258 1.258 7 C -1.036 5.036 8 H 0.115 0.885 9 S 2.719 3.281 10 O -1.026 7.026 11 O -1.014 7.014 12 N -1.051 6.051 13 C 0.160 3.840 14 C -0.125 4.125 15 C -0.060 4.060 16 C 0.217 3.783 17 N -0.504 5.504 18 C 0.080 3.920 19 C -0.100 4.100 20 Br 0.042 6.958 21 N -0.337 5.337 22 C 0.018 3.982 23 H 0.301 0.699 24 H 0.432 0.568 25 H 0.169 0.831 26 H 0.185 0.815 27 H 0.220 0.780 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.047 -9.040 2.430 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.801 3.199 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.183 1.183 7 C -1.170 5.170 8 H 0.133 0.867 9 S 2.820 3.180 10 O -1.016 7.016 11 O -1.004 7.004 12 N -0.800 5.800 13 C 0.060 3.940 14 C -0.151 4.151 15 C -0.080 4.080 16 C -0.026 4.026 17 N -0.225 5.225 18 C -0.077 4.077 19 C -0.291 4.291 20 Br 0.124 6.876 21 N -0.009 5.009 22 C -0.110 4.110 23 H 0.111 0.889 24 H 0.270 0.730 25 H 0.186 0.814 26 H 0.202 0.798 27 H 0.237 0.763 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 15.248 -9.088 2.777 17.967 hybrid contribution 0.315 0.856 -1.199 1.507 sum 15.563 -8.232 1.578 17.676 Atomic orbital electron populations 1.69946 1.08400 1.32466 1.40821 1.25823 0.95322 1.04809 0.87537 0.85201 0.79354 0.75752 0.79594 1.17712 1.18147 1.18250 1.30778 1.06899 1.12134 1.67173 0.86700 1.00281 0.72186 0.73409 0.72092 1.93360 1.73729 1.87896 1.46635 1.93279 1.73574 1.87581 1.45937 1.53433 1.52433 1.48823 1.25320 1.16691 0.88545 1.01045 0.87728 1.22090 1.03695 0.98725 0.90571 1.20441 0.86595 0.99199 1.01772 1.21251 0.96228 1.05697 0.79456 1.70908 0.97702 1.23062 1.30800 1.23021 0.99190 0.98747 0.86734 1.23123 0.83106 1.25520 0.97382 1.96739 1.53118 1.97372 1.40371 1.42513 1.06904 1.43505 1.07952 1.21537 0.88531 1.08026 0.92881 0.88860 0.73023 0.81375 0.79815 0.76312 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.65 13.19 21.45 0.28 -49.37 15 2 C 0.08 4.18 5.46 84.66 0.46 4.64 15 3 Si 0.98 39.75 29.54 68.60 2.03 41.78 15 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 7 C -1.04 -53.38 9.68 67.74 0.66 -52.72 15 8 H 0.11 5.46 7.81 -2.91 -0.02 5.43 15 9 S 2.72 132.18 4.95 -56.49 -0.28 131.90 15 10 O -1.03 -56.18 18.02 -128.00 -2.31 -58.49 15 11 O -1.01 -53.04 14.94 -128.00 -1.91 -54.95 15 12 N -1.05 -36.86 5.77 -51.80 -0.30 -37.16 15 13 C 0.16 5.27 6.17 37.84 0.23 5.50 15 14 C -0.13 -4.20 9.18 22.40 0.21 -4.00 15 15 C -0.06 -1.76 10.10 22.40 0.23 -1.53 15 16 C 0.22 6.67 7.80 134.09 1.05 7.71 15 17 N -0.50 -14.91 11.32 -194.24 -2.20 -17.11 15 18 C 0.08 1.93 11.80 83.74 0.99 2.92 15 19 C -0.10 -2.53 7.47 83.23 0.62 -1.90 15 20 Br 0.04 0.82 34.05 -20.37 -0.69 0.12 15 21 N -0.34 -9.79 2.95 -345.88 -1.02 -10.81 15 22 C 0.02 0.51 10.81 83.29 0.90 1.41 15 23 H 0.30 15.14 8.31 -92.71 -0.77 14.37 15 24 H 0.43 12.04 8.96 -96.74 -0.87 11.17 15 25 H 0.17 6.22 5.62 -2.91 -0.02 6.20 15 26 H 0.18 4.34 8.06 -2.91 -0.02 4.32 15 27 H 0.22 3.51 8.06 -2.91 -0.02 3.49 15 28 H 0.19 4.42 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -69.43 289.40 -0.69 -70.12 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.37 Total: 21.93 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 5.34 Total: -37.97 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.24 Total: -114.44 kcal Atomic # 8 Polarization: -109.22 SS G_CDS: -4.22 Total: -113.44 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: 132.18 SS G_CDS: -0.28 Total: 131.90 kcal Atomic # 35 Polarization: 0.82 SS G_CDS: -0.69 Total: 0.12 kcal Total: -69.43 -0.69 -70.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939413.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.794 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds