Wall clock time and date at job start Wed Apr 1 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99503 * 2 1 4 4 H 1.48505 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46933 * 300.00263 * 3 2 1 6 6 H 1.48493 * 109.47233 * 60.00600 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42109 * 106.39729 * 66.46585 * 9 7 2 11 11 O 1.42101 * 106.40619 * 293.54684 * 9 7 2 12 12 N 1.65597 * 107.21694 * 180.02562 * 9 7 2 13 13 C 1.40084 * 119.99943 * 65.00711 * 12 9 7 14 14 C 1.35745 * 125.75438 * 180.02562 * 13 12 9 15 15 N 1.37185 * 107.06971 * 179.73539 * 14 13 12 16 16 C 1.37044 * 107.06369 * 359.97438 * 15 14 13 17 17 C 1.40823 * 119.64437 * 180.02562 * 16 15 14 18 18 C 1.36133 * 119.36479 * 0.02562 * 17 16 15 19 19 C 1.40343 * 119.68723 * 359.97239 * 18 17 16 20 20 C 1.35176 * 120.25732 * 0.02712 * 19 18 17 21 21 Br 1.89102 * 119.70314 * 179.97438 * 20 19 18 22 22 N 1.32719 * 108.16312 * 0.02562 * 16 15 14 23 23 H 0.96994 * 119.99955 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99928 * 244.99775 * 12 9 7 25 25 H 1.08003 * 126.46198 * 359.75191 * 14 13 12 26 26 H 1.08005 * 120.31811 * 179.97438 * 17 16 15 27 27 H 1.08000 * 120.15911 * 180.02562 * 18 17 16 28 28 H 1.08000 * 119.87048 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7200 -0.0005 10 8 0.4512 -2.7950 -1.2502 11 8 0.4519 -2.7956 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.1005 -4.1011 1.0990 14 6 4.0604 -5.0530 1.2222 15 7 4.6643 -4.8608 2.4389 16 6 4.0496 -3.7868 3.0278 17 6 4.4695 -3.3557 4.3010 18 6 5.4826 -4.0142 4.9281 19 6 6.0928 -5.1108 4.2998 20 6 5.6786 -5.5127 3.0775 21 35 6.5123 -6.9918 2.2450 22 7 3.1094 -3.3444 2.2022 23 1 -0.4850 0.8400 0.0004 24 1 2.3174 -4.5324 -0.7619 25 1 4.3032 -5.8171 0.4986 26 1 3.9930 -2.5103 4.7749 27 1 5.8147 -3.6947 5.9049 28 1 6.8971 -5.6350 4.7945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:34 Heat of formation + Delta-G solvation = 13.822393 kcal Electronic energy + Delta-G solvation = -19642.704224 eV Core-core repulsion = 16254.328264 eV Total energy + Delta-G solvation = -3388.375960 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.68407 -37.76265 -35.20015 -34.23740 -33.93973 -33.75948 -32.97136 -31.39586 -29.21463 -28.13226 -26.04981 -23.22847 -22.94289 -21.34378 -19.12497 -18.10836 -17.34535 -17.16084 -16.24080 -16.01119 -15.84413 -15.18164 -14.67821 -14.48917 -14.01743 -13.95743 -13.43281 -12.83296 -12.56009 -11.99812 -11.97872 -11.39517 -11.24924 -11.16664 -11.00756 -10.93497 -10.74663 -10.52582 -10.30229 -10.18057 -10.14388 -9.66909 -9.17277 -8.75209 -8.07913 -7.67297 -6.62607 -5.20339 0.48967 0.81293 1.22245 2.11113 2.59492 2.95753 3.11698 3.18824 3.27572 3.59164 3.90534 4.16530 4.46804 4.60867 4.72794 4.88891 4.90540 5.33262 5.40186 5.60342 5.73272 5.87509 5.96922 6.01153 6.25357 6.55154 6.71643 7.05604 7.40659 7.56408 8.05610 8.14401 8.97703 10.32421 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.003810 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.976953 B = 7346.825528 C = 8009.160142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.994 4.994 8 H 0.101 0.899 9 S 2.701 3.299 10 O -0.999 6.999 11 O -0.975 6.975 12 N -1.032 6.032 13 C 0.348 3.652 14 C -0.144 4.144 15 N -0.345 5.345 16 C 0.243 3.757 17 C -0.051 4.051 18 C -0.114 4.114 19 C -0.106 4.106 20 C 0.073 3.927 21 Br -0.004 7.004 22 N -0.467 5.467 23 H 0.289 0.711 24 H 0.420 0.580 25 H 0.186 0.814 26 H 0.160 0.840 27 H 0.150 0.850 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.860 -12.842 8.505 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.083 4.083 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.196 1.196 7 C -1.129 5.129 8 H 0.120 0.880 9 S 2.802 3.198 10 O -0.989 6.989 11 O -0.965 6.965 12 N -0.775 5.775 13 C 0.118 3.882 14 C -0.278 4.278 15 N -0.021 5.021 16 C 0.000 4.000 17 C -0.072 4.072 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.111 4.111 21 Br 0.081 6.919 22 N -0.192 5.192 23 H 0.100 0.900 24 H 0.254 0.746 25 H 0.203 0.797 26 H 0.178 0.822 27 H 0.168 0.832 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.402 -12.716 8.307 21.632 hybrid contribution 1.319 0.491 -0.501 1.494 sum 16.721 -12.226 7.806 22.136 Atomic orbital electron populations 1.69902 1.06716 1.30519 1.40787 1.24707 0.94442 1.00677 0.88502 0.86101 0.80441 0.80365 0.78403 1.18725 1.19762 1.19589 1.30264 1.05865 1.10771 1.66005 0.88040 1.01078 0.72064 0.73548 0.73098 1.93408 1.72171 1.87413 1.45904 1.93398 1.71715 1.86564 1.44818 1.53911 1.51170 1.50382 1.22031 1.17052 0.90801 0.92037 0.88296 1.21855 1.04924 1.10009 0.90997 1.42531 1.22675 1.22448 1.14427 1.20876 0.93882 0.88575 0.96660 1.20480 0.96337 1.00429 0.89924 1.20943 0.96457 0.95404 1.01010 1.20737 1.01590 0.98665 0.92043 1.21922 0.95463 0.97525 0.96174 1.96835 1.77335 1.36586 1.81186 1.70834 1.19415 1.27166 1.01748 0.90029 0.74628 0.79737 0.82198 0.83218 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.47 13.19 55.43 0.73 -24.74 15 2 C 0.13 3.84 5.46 -17.82 -0.10 3.75 15 3 Si 0.92 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.99 -28.49 9.68 30.60 0.30 -28.19 15 8 H 0.10 2.76 7.81 -52.49 -0.41 2.35 15 9 S 2.70 74.53 4.77 -107.50 -0.51 74.01 15 10 O -1.00 -29.47 18.02 -57.17 -1.03 -30.50 15 11 O -0.98 -29.78 17.22 -57.17 -0.98 -30.76 15 12 N -1.03 -21.92 5.91 30.94 0.18 -21.74 15 13 C 0.35 7.17 7.51 -153.99 -1.16 6.01 15 14 C -0.14 -2.35 11.31 -16.05 -0.18 -2.53 15 15 N -0.35 -5.33 2.95 -60.62 -0.18 -5.51 15 16 C 0.24 4.28 7.80 -155.98 -1.22 3.06 15 17 C -0.05 -0.66 10.10 -39.36 -0.40 -1.06 15 18 C -0.11 -1.05 10.07 -39.55 -0.40 -1.45 15 19 C -0.11 -0.98 9.68 -39.88 -0.39 -1.36 15 20 C 0.07 0.87 7.14 -16.59 -0.12 0.75 15 21 Br 0.00 -0.03 33.32 -68.01 -2.27 -2.30 15 22 N -0.47 -10.37 10.37 -11.81 -0.12 -10.49 15 23 H 0.29 7.77 8.31 -40.82 -0.34 7.43 15 24 H 0.42 7.07 8.95 -34.47 -0.31 6.76 15 25 H 0.19 2.37 8.06 -52.48 -0.42 1.94 15 26 H 0.16 1.84 8.06 -52.48 -0.42 1.42 15 27 H 0.15 0.82 8.06 -52.49 -0.42 0.39 15 28 H 0.16 0.91 8.06 -52.49 -0.42 0.49 15 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -38.31 292.70 -9.99 -48.30 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -1.54 Total: 4.03 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.66 Total: -21.01 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.61 Total: -62.48 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -2.01 Total: -61.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 74.53 SS G_CDS: -0.51 Total: 74.01 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.27 Total: -2.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -38.31 -9.99 -48.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.123 kcal (2) G-P(sol) polarization free energy of solvation -38.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds