Wall clock time and date at job start Wed Apr 1 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99503 * 2 1 4 4 H 1.48505 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46933 * 300.00263 * 3 2 1 6 6 H 1.48493 * 109.47233 * 60.00600 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42109 * 106.39729 * 66.46585 * 9 7 2 11 11 O 1.42101 * 106.40619 * 293.54684 * 9 7 2 12 12 N 1.65597 * 107.21694 * 180.02562 * 9 7 2 13 13 C 1.40084 * 119.99943 * 65.00711 * 12 9 7 14 14 C 1.35745 * 125.75438 * 180.02562 * 13 12 9 15 15 N 1.37185 * 107.06971 * 179.73539 * 14 13 12 16 16 C 1.37044 * 107.06369 * 359.97438 * 15 14 13 17 17 C 1.40823 * 119.64437 * 180.02562 * 16 15 14 18 18 C 1.36133 * 119.36479 * 0.02562 * 17 16 15 19 19 C 1.40343 * 119.68723 * 359.97239 * 18 17 16 20 20 C 1.35176 * 120.25732 * 0.02712 * 19 18 17 21 21 Br 1.89102 * 119.70314 * 179.97438 * 20 19 18 22 22 N 1.32719 * 108.16312 * 0.02562 * 16 15 14 23 23 H 0.96994 * 119.99955 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99928 * 244.99775 * 12 9 7 25 25 H 1.08003 * 126.46198 * 359.75191 * 14 13 12 26 26 H 1.08005 * 120.31811 * 179.97438 * 17 16 15 27 27 H 1.08000 * 120.15911 * 180.02562 * 18 17 16 28 28 H 1.08000 * 119.87048 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7200 -0.0005 10 8 0.4512 -2.7950 -1.2502 11 8 0.4519 -2.7956 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.1005 -4.1011 1.0990 14 6 4.0604 -5.0530 1.2222 15 7 4.6643 -4.8608 2.4389 16 6 4.0496 -3.7868 3.0278 17 6 4.4695 -3.3557 4.3010 18 6 5.4826 -4.0142 4.9281 19 6 6.0928 -5.1108 4.2998 20 6 5.6786 -5.5127 3.0775 21 35 6.5123 -6.9918 2.2450 22 7 3.1094 -3.3444 2.2022 23 1 -0.4850 0.8400 0.0004 24 1 2.3174 -4.5324 -0.7619 25 1 4.3032 -5.8171 0.4986 26 1 3.9930 -2.5103 4.7749 27 1 5.8147 -3.6947 5.9049 28 1 6.8971 -5.6350 4.7945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:34 Heat of formation + Delta-G solvation = -15.587996 kcal Electronic energy + Delta-G solvation = -19643.979554 eV Core-core repulsion = 16254.328264 eV Total energy + Delta-G solvation = -3389.651290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.86791 -38.88287 -37.43969 -36.21101 -35.65134 -35.13097 -34.85781 -32.41857 -30.23806 -29.30669 -28.26033 -24.29546 -24.06448 -22.68945 -21.08636 -19.75618 -18.74334 -18.70037 -17.99217 -17.24665 -17.13507 -16.89181 -16.17435 -15.95210 -15.55498 -15.44561 -15.09654 -14.17035 -13.96724 -13.45743 -13.33618 -13.02955 -12.96897 -12.75838 -12.60567 -12.46611 -12.43287 -12.30971 -12.04671 -11.72722 -11.37377 -11.24809 -11.05115 -10.88637 -9.32591 -8.90594 -8.73615 -7.44533 -0.44847 -0.05409 0.13259 0.19611 1.30196 1.32293 1.45150 1.50610 1.74062 2.19448 2.44467 2.51252 2.58473 3.26158 3.50773 3.66718 3.84236 4.05767 4.20055 4.30402 4.42782 4.60442 4.70008 4.94829 5.11759 5.24296 5.32122 5.46721 5.86903 5.90177 6.07211 6.78288 6.81587 8.22684 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.003810 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.976953 B = 7346.825528 C = 8009.160142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.254 1.254 6 H -0.256 1.256 7 C -1.013 5.013 8 H 0.106 0.894 9 S 2.716 3.284 10 O -1.031 7.031 11 O -1.017 7.017 12 N -1.024 6.024 13 C 0.299 3.701 14 C -0.127 4.127 15 N -0.347 5.347 16 C 0.230 3.770 17 C -0.087 4.087 18 C -0.071 4.071 19 C -0.086 4.086 20 C 0.048 3.952 21 Br 0.020 6.980 22 N -0.540 5.540 23 H 0.299 0.701 24 H 0.436 0.564 25 H 0.216 0.784 26 H 0.165 0.835 27 H 0.201 0.799 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.558 -13.307 10.443 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.178 1.178 6 H -0.181 1.181 7 C -1.148 5.148 8 H 0.125 0.875 9 S 2.818 3.182 10 O -1.022 7.022 11 O -1.007 7.007 12 N -0.773 5.773 13 C 0.072 3.928 14 C -0.262 4.262 15 N -0.022 5.022 16 C -0.014 4.014 17 C -0.108 4.108 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.135 4.135 21 Br 0.104 6.896 22 N -0.266 5.266 23 H 0.110 0.890 24 H 0.273 0.727 25 H 0.232 0.768 26 H 0.183 0.817 27 H 0.218 0.782 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 19.117 -13.231 10.244 25.406 hybrid contribution 0.398 0.431 -0.900 1.074 sum 19.515 -12.800 9.344 25.140 Atomic orbital electron populations 1.69980 1.08583 1.32253 1.41827 1.25973 0.95430 1.05132 0.87523 0.85071 0.79063 0.75093 0.79628 1.17860 1.17797 1.18054 1.30529 1.06214 1.11843 1.66166 0.87549 1.00210 0.72303 0.73996 0.71717 1.93347 1.73867 1.88179 1.46764 1.93332 1.73634 1.87433 1.46276 1.52972 1.51086 1.49669 1.23581 1.17295 0.92766 0.94453 0.88299 1.22054 1.03345 1.09019 0.91738 1.42611 1.23277 1.22292 1.13990 1.21375 0.93362 0.89115 0.97552 1.20818 0.98709 1.02247 0.89059 1.21584 0.93023 0.93061 1.01814 1.21475 1.01173 0.97707 0.90602 1.22588 0.95070 0.98487 0.97315 1.96870 1.76441 1.35069 1.81183 1.70648 1.22614 1.29894 1.03484 0.89044 0.72657 0.76789 0.81747 0.78181 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.44 13.19 21.45 0.28 -55.16 15 2 C 0.07 4.21 5.46 84.65 0.46 4.67 15 3 Si 0.99 43.84 29.54 68.60 2.03 45.86 15 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 5 H -0.25 -10.36 7.11 99.48 0.71 -9.65 15 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 15 7 C -1.01 -60.19 9.68 67.73 0.66 -59.53 15 8 H 0.11 6.00 7.81 -2.91 -0.02 5.98 15 9 S 2.72 157.95 4.77 -56.49 -0.27 157.68 15 10 O -1.03 -63.99 18.02 -128.00 -2.31 -66.29 15 11 O -1.02 -65.93 17.22 -128.00 -2.20 -68.14 15 12 N -1.02 -45.79 5.91 -56.03 -0.33 -46.12 15 13 C 0.30 12.82 7.51 131.48 0.99 13.81 15 14 C -0.13 -4.14 11.31 83.28 0.94 -3.19 15 15 N -0.35 -10.32 2.95 -345.70 -1.02 -11.34 15 16 C 0.23 8.12 7.80 134.04 1.05 9.16 15 17 C -0.09 -2.14 10.10 22.41 0.23 -1.91 15 18 C -0.07 -0.96 10.07 22.29 0.22 -0.74 15 19 C -0.09 -1.15 9.68 22.08 0.21 -0.94 15 20 C 0.05 0.99 7.14 83.27 0.59 1.59 15 21 Br 0.02 0.32 33.32 -20.37 -0.68 -0.36 15 22 N -0.54 -25.09 10.37 -191.27 -1.98 -27.08 15 23 H 0.30 16.53 8.31 -92.71 -0.77 15.76 15 24 H 0.44 15.48 8.95 -96.74 -0.87 14.62 15 25 H 0.22 5.26 8.06 -2.91 -0.02 5.23 15 26 H 0.17 3.71 8.06 -2.91 -0.02 3.68 15 27 H 0.20 0.77 8.06 -2.91 -0.02 0.75 15 28 H 0.20 0.93 8.06 -2.91 -0.02 0.90 15 Total: -1.00 -89.98 292.70 -0.77 -90.75 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.37 Total: 17.28 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 5.35 Total: -37.09 kcal Atomic # 7 Polarization: -136.64 SS G_CDS: -3.05 Total: -139.70 kcal Atomic # 8 Polarization: -129.92 SS G_CDS: -4.51 Total: -134.43 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 157.95 SS G_CDS: -0.27 Total: 157.68 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.68 Total: -0.36 kcal Total: -89.98 -0.77 -90.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.159 kcal (2) G-P(sol) polarization free energy of solvation -89.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds