Wall clock time and date at job start Wed Apr 1 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99921 * 2 1 4 4 H 1.48497 * 109.46898 * 269.99800 * 3 2 1 5 5 H 1.48504 * 109.46917 * 29.99530 * 3 2 1 6 6 H 1.48499 * 109.47175 * 149.99706 * 3 2 1 7 7 C 1.37881 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99484 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00274 * 180.02562 * 7 2 1 10 10 O 1.42088 * 106.40458 * 66.45881 * 9 7 2 11 11 O 1.42098 * 106.40215 * 293.53836 * 9 7 2 12 12 N 1.65599 * 107.21717 * 179.97438 * 9 7 2 13 13 C 1.47226 * 121.33866 * 89.99649 * 12 9 7 14 14 C 1.52783 * 107.92413 * 115.82657 * 13 12 9 15 15 C 1.50600 * 110.86779 * 47.44264 * 14 13 12 16 16 C 1.38992 * 117.62138 * 160.08272 * 15 14 13 17 17 C 1.37908 * 120.60471 * 179.27797 * 16 15 14 18 18 C 1.38247 * 119.83804 * 359.78503 * 17 16 15 19 19 C 1.38051 * 119.70566 * 0.70850 * 18 17 16 20 20 Br 1.89100 * 119.76238 * 179.73740 * 19 18 17 21 21 C 1.37650 * 122.85537 * 339.80822 * 15 14 13 22 22 C 1.46684 * 121.33656 * 270.02134 * 12 9 7 23 23 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.77169 * 356.22355 * 13 12 9 25 25 H 1.09000 * 109.82089 * 235.45710 * 13 12 9 26 26 H 1.09005 * 109.20041 * 287.08763 * 14 13 12 27 27 H 1.09000 * 109.16294 * 167.78078 * 14 13 12 28 28 H 1.08004 * 119.69792 * 359.30569 * 16 15 14 29 29 H 1.07997 * 120.07969 * 180.02562 * 17 16 15 30 30 H 1.08003 * 120.14950 * 180.47120 * 18 17 16 31 31 H 1.09004 * 109.44182 * 104.37003 * 22 12 9 32 32 H 1.08993 * 109.44081 * 344.48690 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 16 3.7665 -1.1939 0.0012 10 8 4.1673 -0.6492 1.2508 11 8 4.1682 -0.6498 -1.2485 12 7 4.2567 -2.7757 0.0025 13 6 4.4838 -3.5080 -1.2544 14 6 5.9662 -3.8709 -1.3259 15 6 6.4355 -4.4685 -0.0257 16 6 7.6006 -5.2260 -0.0480 17 6 8.0941 -5.7894 1.1100 18 6 7.4285 -5.5971 2.3064 19 6 6.2654 -4.8538 2.3304 20 35 5.3497 -4.5960 3.9646 21 6 5.7658 -4.2890 1.1635 22 6 4.4816 -3.5037 1.2559 23 1 -0.4851 0.8400 -0.0004 24 1 4.2175 -2.8767 -2.1023 25 1 3.8810 -4.4160 -1.2673 26 1 6.5456 -2.9720 -1.5370 27 1 6.1196 -4.5927 -2.1282 28 1 8.1246 -5.3745 -0.9807 29 1 9.0003 -6.3762 1.0830 30 1 7.8146 -6.0297 3.2176 31 1 3.6508 -4.1867 1.4329 32 1 4.5490 -2.7941 2.0804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192954084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:33 Heat of formation + Delta-G solvation = -48.587072 kcal Electronic energy + Delta-G solvation = -20371.496713 eV Core-core repulsion = 17083.954819 eV Total energy + Delta-G solvation = -3287.541894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99442 -36.37604 -35.75278 -34.47407 -33.33766 -33.03957 -31.27191 -30.44996 -28.63472 -26.40749 -24.93726 -23.61265 -21.91373 -20.28304 -18.65967 -17.34907 -16.92519 -16.54918 -15.72325 -15.37913 -15.05233 -14.67436 -14.47130 -13.70742 -13.60832 -13.42468 -13.26393 -12.95729 -12.65833 -12.31562 -12.22132 -11.71127 -11.62801 -11.38575 -11.10854 -10.87605 -10.79377 -10.64711 -10.54048 -10.46081 -10.10139 -9.83318 -9.22379 -9.20289 -8.70296 -8.64585 -8.36770 -6.81650 -5.35845 1.02475 1.22137 1.64075 1.92646 3.06056 3.16226 3.25649 3.50651 3.93829 4.06731 4.55926 4.61236 4.64898 4.83657 5.09225 5.15417 5.26228 5.32655 5.45681 5.48682 5.63473 5.70636 5.78898 5.91974 5.94562 6.03927 6.12747 6.21096 6.22601 6.40706 6.66093 6.76497 7.22653 7.47117 8.20598 8.69001 10.30676 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004960 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.262233 B = 5643.671933 C = 6741.065309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.154 3.846 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.219 1.219 7 C -1.015 5.015 8 H 0.122 0.878 9 S 2.676 3.324 10 O -1.002 7.002 11 O -1.005 7.005 12 N -1.002 6.002 13 C 0.124 3.876 14 C -0.099 4.099 15 C -0.060 4.060 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.095 4.095 19 C -0.089 4.089 20 Br -0.047 7.047 21 C -0.054 4.054 22 C 0.154 3.846 23 H 0.281 0.719 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.231 -13.293 3.149 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.141 1.141 7 C -1.149 5.149 8 H 0.140 0.860 9 S 2.780 3.220 10 O -0.993 6.993 11 O -0.996 6.996 12 N -0.836 5.836 13 C -0.002 4.002 14 C -0.137 4.137 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.140 4.140 18 C -0.115 4.115 19 C -0.169 4.169 20 Br 0.039 6.961 21 C -0.058 4.058 22 C 0.028 3.972 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.102 0.898 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.281 -12.359 3.771 18.530 hybrid contribution -0.223 0.268 -0.288 0.453 sum 13.058 -12.091 3.482 18.133 Atomic orbital electron populations 1.69980 1.06559 1.29064 1.39477 1.24421 0.94782 0.98756 0.88639 0.87906 0.83708 0.84634 0.81897 1.16949 1.17774 1.14125 1.30503 1.15469 1.02225 1.66749 0.85979 1.01457 0.77335 0.69925 0.73319 1.93456 1.85351 1.75340 1.45115 1.93397 1.85382 1.75439 1.45359 1.57826 1.84422 1.31434 1.09917 1.21281 0.94280 0.97722 0.86949 1.20902 0.97977 1.01204 0.93640 1.19559 0.94778 0.97195 0.94584 1.21318 0.95514 0.96970 0.98703 1.21010 1.00147 1.00626 0.92176 1.20988 0.93662 0.97882 0.98929 1.21770 0.98590 1.04801 0.91764 1.96729 1.76603 1.96321 1.26471 1.19859 0.97255 0.97122 0.91530 1.20351 0.92946 0.96090 0.87835 0.90863 0.88049 0.91205 0.89620 0.89548 0.85476 0.85319 0.85086 0.89827 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.70 13.96 55.43 0.77 -22.93 16 2 C 0.15 4.42 5.47 -17.82 -0.10 4.32 16 3 Si 0.80 20.55 26.54 -169.99 -4.51 16.04 16 4 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.25 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.22 -5.75 5.61 56.52 0.32 -5.43 16 7 C -1.01 -28.30 10.29 30.60 0.31 -27.98 16 8 H 0.12 3.44 8.06 -52.49 -0.42 3.01 16 9 S 2.68 67.15 4.25 -107.50 -0.46 66.69 16 10 O -1.00 -26.97 14.66 -57.18 -0.84 -27.81 16 11 O -1.01 -26.34 15.59 -57.18 -0.89 -27.23 16 12 N -1.00 -19.83 3.26 -115.04 -0.37 -20.20 16 13 C 0.12 1.97 6.41 -3.76 -0.02 1.95 16 14 C -0.10 -1.30 5.87 -28.04 -0.16 -1.47 16 15 C -0.06 -0.83 5.76 -104.61 -0.60 -1.43 16 16 C -0.11 -1.17 9.59 -39.42 -0.38 -1.55 16 17 C -0.12 -1.22 10.04 -39.70 -0.40 -1.61 16 18 C -0.09 -1.07 9.78 -39.65 -0.39 -1.46 16 19 C -0.09 -1.24 6.22 -39.39 -0.24 -1.48 16 20 Br -0.05 -0.64 31.93 -68.01 -2.17 -2.81 16 21 C -0.05 -0.84 5.82 -104.53 -0.61 -1.45 16 22 C 0.15 2.75 5.36 -5.04 -0.03 2.73 16 23 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.10 1.66 7.16 -51.92 -0.37 1.28 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.13 1.05 8.05 -52.48 -0.42 0.63 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.11 2.18 6.19 -51.93 -0.32 1.86 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -32.34 297.01 -9.91 -42.25 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.29 Total: 0.96 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -2.62 Total: -29.43 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.40 Total: -43.13 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -1.73 Total: -55.04 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 67.15 SS G_CDS: -0.46 Total: 66.69 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.17 Total: -2.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.34 -9.91 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192954084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.336 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds