Wall clock time and date at job start Wed Apr 1 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99921 * 2 1 4 4 H 1.48497 * 109.46898 * 269.99800 * 3 2 1 5 5 H 1.48504 * 109.46917 * 29.99530 * 3 2 1 6 6 H 1.48499 * 109.47175 * 149.99706 * 3 2 1 7 7 C 1.37881 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99484 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00274 * 180.02562 * 7 2 1 10 10 O 1.42088 * 106.40458 * 66.45881 * 9 7 2 11 11 O 1.42098 * 106.40215 * 293.53836 * 9 7 2 12 12 N 1.65599 * 107.21717 * 179.97438 * 9 7 2 13 13 C 1.47226 * 121.33866 * 89.99649 * 12 9 7 14 14 C 1.52783 * 107.92413 * 115.82657 * 13 12 9 15 15 C 1.50600 * 110.86779 * 47.44264 * 14 13 12 16 16 C 1.38992 * 117.62138 * 160.08272 * 15 14 13 17 17 C 1.37908 * 120.60471 * 179.27797 * 16 15 14 18 18 C 1.38247 * 119.83804 * 359.78503 * 17 16 15 19 19 C 1.38051 * 119.70566 * 0.70850 * 18 17 16 20 20 Br 1.89100 * 119.76238 * 179.73740 * 19 18 17 21 21 C 1.37650 * 122.85537 * 339.80822 * 15 14 13 22 22 C 1.46684 * 121.33656 * 270.02134 * 12 9 7 23 23 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.77169 * 356.22355 * 13 12 9 25 25 H 1.09000 * 109.82089 * 235.45710 * 13 12 9 26 26 H 1.09005 * 109.20041 * 287.08763 * 14 13 12 27 27 H 1.09000 * 109.16294 * 167.78078 * 14 13 12 28 28 H 1.08004 * 119.69792 * 359.30569 * 16 15 14 29 29 H 1.07997 * 120.07969 * 180.02562 * 17 16 15 30 30 H 1.08003 * 120.14950 * 180.47120 * 18 17 16 31 31 H 1.09004 * 109.44182 * 104.37003 * 22 12 9 32 32 H 1.08993 * 109.44081 * 344.48690 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 16 3.7665 -1.1939 0.0012 10 8 4.1673 -0.6492 1.2508 11 8 4.1682 -0.6498 -1.2485 12 7 4.2567 -2.7757 0.0025 13 6 4.4838 -3.5080 -1.2544 14 6 5.9662 -3.8709 -1.3259 15 6 6.4355 -4.4685 -0.0257 16 6 7.6006 -5.2260 -0.0480 17 6 8.0941 -5.7894 1.1100 18 6 7.4285 -5.5971 2.3064 19 6 6.2654 -4.8538 2.3304 20 35 5.3497 -4.5960 3.9646 21 6 5.7658 -4.2890 1.1635 22 6 4.4816 -3.5037 1.2559 23 1 -0.4851 0.8400 -0.0004 24 1 4.2175 -2.8767 -2.1023 25 1 3.8810 -4.4160 -1.2673 26 1 6.5456 -2.9720 -1.5370 27 1 6.1196 -4.5927 -2.1282 28 1 8.1246 -5.3745 -0.9807 29 1 9.0003 -6.3762 1.0830 30 1 7.8146 -6.0297 3.2176 31 1 3.6508 -4.1867 1.4329 32 1 4.5490 -2.7941 2.0804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192954084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:33 Heat of formation + Delta-G solvation = -70.838729 kcal Electronic energy + Delta-G solvation = -20372.461617 eV Core-core repulsion = 17083.954819 eV Total energy + Delta-G solvation = -3288.506798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01035 -37.82588 -37.57563 -36.54853 -35.21612 -34.37380 -32.37274 -31.55611 -29.63530 -28.58358 -26.18676 -24.74513 -22.87620 -21.55849 -20.58807 -19.11993 -18.71533 -17.71880 -17.35594 -16.69185 -16.50241 -16.03388 -15.59724 -15.47666 -15.29924 -14.99627 -14.65267 -14.30289 -13.91864 -13.68670 -13.52217 -13.39702 -13.10310 -12.86257 -12.81514 -12.69574 -12.49335 -12.11392 -11.91213 -11.75178 -11.58106 -11.36115 -11.23927 -11.14764 -10.01202 -9.63836 -9.56402 -8.99530 -7.56048 0.00289 0.11389 0.28957 0.65177 1.01966 1.11199 1.18634 1.86285 2.33091 2.38747 2.60691 3.31643 3.54330 3.60255 3.90884 4.00002 4.04170 4.21573 4.26583 4.39117 4.45485 4.52263 4.60795 4.71795 4.77671 4.88341 5.06166 5.15132 5.24921 5.35580 5.42708 5.57887 5.70756 5.89079 5.98400 6.50119 8.18341 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004960 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.262233 B = 5643.671933 C = 6741.065309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.109 3.891 3 Si 0.821 3.179 4 H -0.235 1.235 5 H -0.218 1.218 6 H -0.231 1.231 7 C -1.038 5.038 8 H 0.105 0.895 9 S 2.697 3.303 10 O -1.025 7.025 11 O -1.019 7.019 12 N -1.000 6.000 13 C 0.109 3.891 14 C -0.094 4.094 15 C -0.076 4.076 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.104 4.104 20 Br -0.059 7.059 21 C -0.083 4.083 22 C 0.152 3.848 23 H 0.292 0.708 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.162 0.838 29 H 0.169 0.831 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.857 -14.751 2.412 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.108 4.108 3 Si 0.638 3.362 4 H -0.158 1.158 5 H -0.140 1.140 6 H -0.153 1.153 7 C -1.171 5.171 8 H 0.123 0.877 9 S 2.799 3.201 10 O -1.016 7.016 11 O -1.009 7.009 12 N -0.838 5.838 13 C -0.015 4.015 14 C -0.132 4.132 15 C -0.077 4.077 16 C -0.117 4.117 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.184 4.184 20 Br 0.027 6.973 21 C -0.087 4.087 22 C 0.026 3.974 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.186 0.814 30 H 0.170 0.830 31 H 0.105 0.895 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.871 -13.805 3.030 21.252 hybrid contribution -0.988 0.557 -0.067 1.136 sum 14.883 -13.248 2.964 20.144 Atomic orbital electron populations 1.70002 1.07413 1.30536 1.40232 1.25158 0.95638 1.01385 0.88581 0.87547 0.82910 0.82902 0.82863 1.15779 1.13963 1.15312 1.31029 1.17927 1.01666 1.66459 0.87693 1.00608 0.75818 0.71284 0.72434 1.93416 1.85071 1.77056 1.46019 1.93363 1.84990 1.76886 1.45690 1.57441 1.83906 1.30220 1.12259 1.21668 0.97284 0.97819 0.84734 1.20919 0.95166 1.02096 0.95052 1.19737 0.95976 0.98107 0.93857 1.21683 0.94168 0.95277 1.00585 1.21500 1.00677 0.99441 0.91028 1.21344 0.92507 0.96834 1.00665 1.21887 0.99702 1.05922 0.90867 1.96709 1.77171 1.96474 1.26994 1.19708 0.96950 0.98750 0.93248 1.20379 0.95245 0.95688 0.86071 0.89748 0.88917 0.89155 0.90314 0.85363 0.82054 0.81396 0.82965 0.89524 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.94 13.96 21.45 0.30 -49.65 16 2 C 0.11 6.39 5.47 84.66 0.46 6.85 16 3 Si 0.82 41.57 26.54 68.60 1.82 43.39 16 4 H -0.23 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.23 -12.07 5.61 99.48 0.56 -11.52 16 7 C -1.04 -59.77 10.29 67.74 0.70 -59.08 16 8 H 0.10 6.19 8.06 -2.91 -0.02 6.17 16 9 S 2.70 138.09 4.25 -56.49 -0.24 137.85 16 10 O -1.03 -56.54 14.66 -128.00 -1.88 -58.42 16 11 O -1.02 -53.87 15.59 -128.00 -2.00 -55.86 16 12 N -1.00 -40.12 3.26 -517.86 -1.69 -41.81 16 13 C 0.11 3.41 6.41 86.17 0.55 3.96 16 14 C -0.09 -2.24 5.87 29.74 0.17 -2.07 16 15 C -0.08 -1.88 5.76 -19.85 -0.11 -2.00 16 16 C -0.10 -1.71 9.59 22.37 0.21 -1.50 16 17 C -0.11 -1.65 10.04 22.19 0.22 -1.42 16 18 C -0.09 -1.82 9.78 22.23 0.22 -1.61 16 19 C -0.10 -2.74 6.22 22.39 0.14 -2.60 16 20 Br -0.06 -1.61 31.93 -20.37 -0.65 -2.26 16 21 C -0.08 -2.49 5.82 -19.80 -0.12 -2.61 16 22 C 0.15 5.54 5.36 85.63 0.46 6.00 16 23 H 0.29 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.09 3.01 7.16 -2.38 -0.02 3.00 16 25 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.13 1.96 8.10 -2.39 -0.02 1.94 16 28 H 0.16 1.68 8.05 -2.91 -0.02 1.66 16 29 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.09 2.96 8.14 -2.38 -0.02 2.95 16 32 H 0.09 3.63 6.19 -2.39 -0.01 3.62 16 Total: -1.00 -71.80 297.01 -0.42 -72.23 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.00 Total: 10.60 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 2.91 Total: -56.07 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.39 Total: -91.45 kcal Atomic # 8 Polarization: -110.41 SS G_CDS: -3.87 Total: -114.28 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.82 Total: 43.39 kcal Atomic # 16 Polarization: 138.09 SS G_CDS: -0.24 Total: 137.85 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -0.65 Total: -2.26 kcal Total: -71.80 -0.42 -72.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192954084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.389 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds