Wall clock time and date at job start Wed Apr 1 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47718 * 270.00090 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.47012 * 150.00170 * 3 2 1 7 7 C 1.37879 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00604 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99339 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40186 * 66.45847 * 9 7 2 11 11 O 1.42101 * 106.40098 * 293.53302 * 9 7 2 12 12 N 1.65607 * 107.21329 * 179.97438 * 9 7 2 13 13 C 1.47236 * 121.33697 * 270.01843 * 12 9 7 14 14 C 1.52786 * 107.89357 * 115.71050 * 13 12 9 15 15 C 1.50609 * 110.85417 * 47.48763 * 14 13 12 16 16 C 1.38984 * 117.60554 * 160.29921 * 15 14 13 17 17 C 1.37896 * 120.59806 * 179.28939 * 16 15 14 18 18 C 1.38361 * 119.81215 * 0.04192 * 17 16 15 19 19 Br 1.89097 * 120.14960 * 180.25066 * 18 17 16 20 20 C 1.38042 * 119.69271 * 0.25891 * 18 17 16 21 21 C 1.37671 * 122.85693 * 339.96572 * 15 14 13 22 22 C 1.46684 * 121.33783 * 90.00205 * 12 9 7 23 23 H 0.97000 * 119.99403 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.77488 * 235.31101 * 13 12 9 25 25 H 1.09001 * 109.77206 * 356.11545 * 13 12 9 26 26 H 1.09000 * 109.20025 * 167.83682 * 14 13 12 27 27 H 1.09004 * 109.20706 * 287.17590 * 14 13 12 28 28 H 1.08001 * 119.70540 * 359.26265 * 16 15 14 29 29 H 1.08000 * 120.09307 * 180.08546 * 17 16 15 30 30 H 1.08006 * 119.74874 * 180.02562 * 20 18 17 31 31 H 1.08994 * 109.43697 * 104.30609 * 22 12 9 32 32 H 1.08997 * 109.39907 * 344.41068 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2485 11 8 4.1673 -0.6495 -1.2511 12 7 4.2567 -2.7759 -0.0011 13 6 4.4835 -3.5072 1.2566 14 6 3.4639 -4.6427 1.3297 15 6 3.4134 -5.4025 0.0303 16 6 2.8742 -6.6833 0.0537 17 6 2.7845 -7.4283 -1.1032 18 6 3.2354 -6.8986 -2.2992 19 35 3.1104 -7.9091 -3.8926 20 6 3.7770 -5.6291 -2.3238 21 6 3.8683 -4.8792 -1.1590 22 6 4.4821 -3.5049 -1.2538 23 1 -0.4849 0.8401 0.0004 24 1 5.4934 -3.9170 1.2680 25 1 4.3480 -2.8347 2.1037 26 1 3.7436 -5.3244 2.1329 27 1 2.4784 -4.2268 1.5396 28 1 2.5227 -7.0990 0.9864 29 1 2.3628 -8.4222 -1.0759 30 1 4.1289 -5.2145 -3.2570 31 1 5.5534 -3.5976 -1.4319 32 1 4.0233 -2.9588 -2.0780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:35 Heat of formation + Delta-G solvation = -51.550991 kcal Electronic energy + Delta-G solvation = -20255.082119 eV Core-core repulsion = 16967.411700 eV Total energy + Delta-G solvation = -3287.670419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92677 -36.41464 -35.78830 -34.51700 -33.08749 -32.90247 -31.78329 -30.30579 -28.53885 -26.42501 -24.93338 -23.30362 -22.30892 -20.19253 -18.44774 -17.56787 -16.90596 -16.41885 -15.60522 -15.41674 -15.16311 -14.67889 -14.32752 -13.71491 -13.65390 -13.34558 -13.24191 -12.90103 -12.75348 -12.29087 -12.24920 -11.82537 -11.62789 -11.42320 -11.03779 -10.90968 -10.73972 -10.64496 -10.55436 -10.36234 -10.33659 -9.87486 -9.24066 -9.22649 -8.86165 -8.44260 -8.38329 -6.83083 -5.37342 1.11071 1.27987 1.58037 1.90398 3.04275 3.14808 3.23312 3.57027 3.91920 4.05076 4.54925 4.65249 4.76979 4.87985 5.09489 5.21803 5.25989 5.36556 5.44028 5.54125 5.71041 5.73448 5.83335 5.91588 5.96692 5.99973 6.14660 6.17762 6.27839 6.42034 6.73455 6.83738 7.19819 7.45657 8.19641 8.67592 10.29253 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.003560 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.607816 B = 7863.702242 C = 8252.636434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.121 0.879 9 S 2.676 3.324 10 O -1.003 7.003 11 O -1.007 7.007 12 N -1.003 6.003 13 C 0.125 3.875 14 C -0.105 4.105 15 C -0.042 4.042 16 C -0.116 4.116 17 C -0.095 4.095 18 C -0.094 4.094 19 Br -0.061 7.061 20 C -0.085 4.085 21 C -0.078 4.078 22 C 0.168 3.832 23 H 0.281 0.719 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -16.564 -2.723 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.139 0.861 9 S 2.780 3.220 10 O -0.993 6.993 11 O -0.997 6.997 12 N -0.837 5.837 13 C -0.001 4.001 14 C -0.143 4.143 15 C -0.043 4.043 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.173 4.173 19 Br 0.024 6.976 20 C -0.106 4.106 21 C -0.081 4.081 22 C 0.042 3.958 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.809 -16.104 -3.314 17.796 hybrid contribution -0.653 0.500 0.230 0.854 sum 6.156 -15.604 -3.084 17.056 Atomic orbital electron populations 1.69994 1.06574 1.29038 1.39453 1.24431 0.94776 0.98747 0.88661 0.87898 0.83610 0.84650 0.81907 1.16968 1.17812 1.14191 1.30496 1.15494 1.02145 1.66724 0.86068 1.01457 0.77346 0.69935 0.73292 1.93456 1.85400 1.75322 1.45147 1.93407 1.85393 1.75581 1.45314 1.57854 1.84609 1.31158 1.10089 1.21287 0.97928 0.93959 0.86964 1.20973 1.02194 0.97393 0.93785 1.19677 0.95806 0.93732 0.95077 1.21185 1.00101 0.94080 0.98156 1.20945 0.99328 1.00111 0.91130 1.21571 1.07321 0.96382 0.92057 1.96670 1.97716 1.71569 1.31605 1.21022 0.98468 0.92407 0.98685 1.19968 0.99139 0.96584 0.92361 1.20078 0.99785 0.88586 0.87400 0.90885 0.91376 0.88004 0.89730 0.88857 0.85211 0.85298 0.84790 0.90422 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.49 13.96 55.43 0.77 -22.72 16 2 C 0.15 4.35 5.47 -17.82 -0.10 4.25 16 3 Si 0.80 20.27 26.54 -169.99 -4.51 15.76 16 4 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.25 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.22 -5.64 5.61 56.52 0.32 -5.33 16 7 C -1.01 -27.76 10.29 30.60 0.31 -27.44 16 8 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 9 S 2.68 65.22 4.22 -107.50 -0.45 64.76 16 10 O -1.00 -25.87 14.71 -57.17 -0.84 -26.71 16 11 O -1.01 -26.15 15.75 -57.17 -0.90 -27.05 16 12 N -1.00 -18.87 3.26 -115.03 -0.37 -19.25 16 13 C 0.12 1.91 6.46 -3.75 -0.02 1.88 16 14 C -0.11 -1.42 5.86 -28.04 -0.16 -1.58 16 15 C -0.04 -0.59 5.76 -104.60 -0.60 -1.20 16 16 C -0.12 -1.40 9.59 -39.43 -0.38 -1.78 16 17 C -0.10 -1.12 9.79 -39.66 -0.39 -1.51 16 18 C -0.09 -1.20 6.22 -39.61 -0.25 -1.44 16 19 Br -0.06 -0.69 33.71 -68.01 -2.29 -2.98 16 20 C -0.09 -1.15 9.37 -39.44 -0.37 -1.52 16 21 C -0.08 -1.16 5.82 -104.56 -0.61 -1.77 16 22 C 0.17 2.73 6.10 -5.04 -0.03 2.70 16 23 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 1.62 7.04 -51.93 -0.37 1.25 16 26 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.60 8.05 -52.48 -0.42 1.18 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.77 7.41 -51.93 -0.39 1.38 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -31.77 300.21 -10.02 -41.79 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.35 Total: 1.29 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -2.60 Total: -29.41 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.40 Total: -41.97 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -1.74 Total: -53.76 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.51 Total: 15.76 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.45 Total: 64.76 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.77 -10.02 -41.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.761 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds