Wall clock time and date at job start Wed Apr 1 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47718 * 270.00090 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.47012 * 150.00170 * 3 2 1 7 7 C 1.37879 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00604 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99339 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40186 * 66.45847 * 9 7 2 11 11 O 1.42101 * 106.40098 * 293.53302 * 9 7 2 12 12 N 1.65607 * 107.21329 * 179.97438 * 9 7 2 13 13 C 1.47236 * 121.33697 * 270.01843 * 12 9 7 14 14 C 1.52786 * 107.89357 * 115.71050 * 13 12 9 15 15 C 1.50609 * 110.85417 * 47.48763 * 14 13 12 16 16 C 1.38984 * 117.60554 * 160.29921 * 15 14 13 17 17 C 1.37896 * 120.59806 * 179.28939 * 16 15 14 18 18 C 1.38361 * 119.81215 * 0.04192 * 17 16 15 19 19 Br 1.89097 * 120.14960 * 180.25066 * 18 17 16 20 20 C 1.38042 * 119.69271 * 0.25891 * 18 17 16 21 21 C 1.37671 * 122.85693 * 339.96572 * 15 14 13 22 22 C 1.46684 * 121.33783 * 90.00205 * 12 9 7 23 23 H 0.97000 * 119.99403 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.77488 * 235.31101 * 13 12 9 25 25 H 1.09001 * 109.77206 * 356.11545 * 13 12 9 26 26 H 1.09000 * 109.20025 * 167.83682 * 14 13 12 27 27 H 1.09004 * 109.20706 * 287.17590 * 14 13 12 28 28 H 1.08001 * 119.70540 * 359.26265 * 16 15 14 29 29 H 1.08000 * 120.09307 * 180.08546 * 17 16 15 30 30 H 1.08006 * 119.74874 * 180.02562 * 20 18 17 31 31 H 1.08994 * 109.43697 * 104.30609 * 22 12 9 32 32 H 1.08997 * 109.39907 * 344.41068 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2485 11 8 4.1673 -0.6495 -1.2511 12 7 4.2567 -2.7759 -0.0011 13 6 4.4835 -3.5072 1.2566 14 6 3.4639 -4.6427 1.3297 15 6 3.4134 -5.4025 0.0303 16 6 2.8742 -6.6833 0.0537 17 6 2.7845 -7.4283 -1.1032 18 6 3.2354 -6.8986 -2.2992 19 35 3.1104 -7.9091 -3.8926 20 6 3.7770 -5.6291 -2.3238 21 6 3.8683 -4.8792 -1.1590 22 6 4.4821 -3.5049 -1.2538 23 1 -0.4849 0.8401 0.0004 24 1 5.4934 -3.9170 1.2680 25 1 4.3480 -2.8347 2.1037 26 1 3.7436 -5.3244 2.1329 27 1 2.4784 -4.2268 1.5396 28 1 2.5227 -7.0990 0.9864 29 1 2.3628 -8.4222 -1.0759 30 1 4.1289 -5.2145 -3.2570 31 1 5.5534 -3.5976 -1.4319 32 1 4.0233 -2.9588 -2.0780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:35 Heat of formation + Delta-G solvation = -72.784547 kcal Electronic energy + Delta-G solvation = -20256.002875 eV Core-core repulsion = 16967.411700 eV Total energy + Delta-G solvation = -3288.591175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97717 -37.80541 -37.59954 -36.53120 -35.19613 -34.00842 -32.84920 -31.37527 -29.59227 -28.55643 -26.15765 -24.45517 -23.30607 -21.57385 -20.24115 -19.28283 -18.68940 -17.61067 -17.30170 -16.73964 -16.49195 -15.96799 -15.57333 -15.50112 -15.17519 -15.00827 -14.59258 -14.30040 -13.94762 -13.69345 -13.52168 -13.34568 -13.11978 -12.96052 -12.77442 -12.68634 -12.53943 -12.13072 -11.84816 -11.67435 -11.44452 -11.34752 -11.27798 -11.17444 -10.04922 -9.71040 -9.43620 -8.97226 -7.53016 0.03577 0.11153 0.29770 0.63908 1.03837 1.13074 1.19859 1.87720 2.36830 2.41932 2.57686 3.33923 3.54929 3.71998 3.89904 3.97530 4.06632 4.15472 4.27053 4.40343 4.48846 4.60911 4.63365 4.77143 4.84257 4.90576 4.98705 5.18521 5.19872 5.31139 5.39164 5.62939 5.75921 5.85413 6.01589 6.53120 8.20612 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.003560 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.607816 B = 7863.702242 C = 8252.636434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.109 3.891 3 Si 0.822 3.178 4 H -0.240 1.240 5 H -0.219 1.219 6 H -0.226 1.226 7 C -1.035 5.035 8 H 0.102 0.898 9 S 2.698 3.302 10 O -1.019 7.019 11 O -1.026 7.026 12 N -1.001 6.001 13 C 0.113 3.887 14 C -0.102 4.102 15 C -0.059 4.059 16 C -0.113 4.113 17 C -0.093 4.093 18 C -0.103 4.103 19 Br -0.049 7.049 20 C -0.094 4.094 21 C -0.097 4.097 22 C 0.161 3.839 23 H 0.291 0.709 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -18.064 -2.328 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.108 4.108 3 Si 0.639 3.361 4 H -0.164 1.164 5 H -0.141 1.141 6 H -0.149 1.149 7 C -1.167 5.167 8 H 0.120 0.880 9 S 2.800 3.200 10 O -1.010 7.010 11 O -1.016 7.016 12 N -0.839 5.839 13 C -0.011 4.011 14 C -0.140 4.140 15 C -0.059 4.059 16 C -0.131 4.131 17 C -0.113 4.113 18 C -0.183 4.183 19 Br 0.037 6.963 20 C -0.114 4.114 21 C -0.100 4.100 22 C 0.036 3.964 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.143 0.857 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.122 0.878 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.602 -17.593 -2.916 19.386 hybrid contribution -0.904 0.794 0.073 1.206 sum 6.698 -16.799 -2.843 18.308 Atomic orbital electron populations 1.70024 1.07503 1.30422 1.40476 1.25171 0.95591 1.01399 0.88605 0.87532 0.83023 0.82918 0.82614 1.16352 1.14099 1.14887 1.31038 1.18117 1.01376 1.66193 0.88027 1.00583 0.75683 0.71370 0.72388 1.93423 1.84980 1.76890 1.45671 1.93370 1.85019 1.77234 1.46028 1.57460 1.83959 1.29926 1.12525 1.21656 1.00497 0.94094 0.84872 1.20974 1.00511 0.97389 0.95112 1.19855 0.96469 0.94773 0.94836 1.21479 0.99005 0.93126 0.99501 1.21287 0.98358 1.01028 0.90617 1.21764 1.07106 0.96312 0.93081 1.96680 1.97662 1.71005 1.30995 1.21122 0.98807 0.92889 0.98629 1.19912 1.00630 0.95974 0.93446 1.20279 1.01537 0.89031 0.85570 0.89884 0.88000 0.88959 0.85702 0.90978 0.82366 0.82948 0.84077 0.87771 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.55 13.96 21.45 0.30 -49.25 16 2 C 0.11 6.26 5.47 84.65 0.46 6.72 16 3 Si 0.82 40.85 26.54 68.60 1.82 42.67 16 4 H -0.24 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.22 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.23 -11.47 5.61 99.48 0.56 -10.91 16 7 C -1.03 -58.08 10.29 67.73 0.70 -57.38 16 8 H 0.10 5.92 8.06 -2.92 -0.02 5.89 16 9 S 2.70 132.38 4.22 -56.49 -0.24 132.14 16 10 O -1.02 -52.61 14.71 -128.00 -1.88 -54.49 16 11 O -1.03 -53.65 15.75 -128.00 -2.02 -55.66 16 12 N -1.00 -37.26 3.26 -517.85 -1.69 -38.94 16 13 C 0.11 3.31 6.46 86.17 0.56 3.86 16 14 C -0.10 -2.56 5.86 29.75 0.17 -2.39 16 15 C -0.06 -1.54 5.76 -19.85 -0.11 -1.65 16 16 C -0.11 -2.38 9.59 22.37 0.21 -2.17 16 17 C -0.09 -1.95 9.79 22.22 0.22 -1.73 16 18 C -0.10 -2.43 6.22 22.25 0.14 -2.30 16 19 Br -0.05 -1.01 33.71 -20.37 -0.69 -1.70 16 20 C -0.09 -2.44 9.37 22.36 0.21 -2.23 16 21 C -0.10 -2.79 5.82 -19.82 -0.12 -2.90 16 22 C 0.16 5.16 6.10 85.63 0.52 5.68 16 23 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.09 2.86 7.04 -2.39 -0.02 2.84 16 26 H 0.12 2.09 8.11 -2.39 -0.02 2.07 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.16 2.38 8.05 -2.91 -0.02 2.35 16 29 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.14 3.29 8.05 -2.91 -0.02 3.26 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.09 3.01 7.41 -2.39 -0.02 2.99 16 Total: -1.00 -68.66 300.21 -0.43 -69.09 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.00 Total: 12.62 kcal Atomic # 6 Polarization: -59.45 SS G_CDS: 2.96 Total: -56.49 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.39 Total: -88.19 kcal Atomic # 8 Polarization: -106.25 SS G_CDS: -3.90 Total: -110.15 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.82 Total: 42.67 kcal Atomic # 16 Polarization: 132.38 SS G_CDS: -0.24 Total: 132.14 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.70 kcal Total: -68.66 -0.43 -69.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.691 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds