Wall clock time and date at job start Wed Apr 1 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40184 * 293.54281 * 9 7 2 11 11 O 1.42097 * 106.40177 * 66.45802 * 9 7 2 12 12 N 1.65595 * 107.22033 * 180.02562 * 9 7 2 13 13 C 1.46504 * 119.99792 * 65.00456 * 12 9 7 14 14 H 1.08995 * 110.26880 * 337.06475 * 13 12 9 15 15 C 1.54352 * 110.29880 * 214.99819 * 13 12 9 16 16 C 1.54344 * 102.38960 * 214.71879 * 15 13 12 17 17 C 1.51377 * 105.16977 * 26.35584 * 16 15 13 18 18 C 1.38507 * 130.37815 * 162.78261 * 17 16 15 19 19 C 1.38083 * 120.22868 * 180.02562 * 18 17 16 20 20 C 1.38341 * 119.92426 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 120.04571 * 180.02562 * 20 19 18 22 22 C 1.38192 * 119.91253 * 359.97438 * 20 19 18 23 23 C 1.38224 * 109.75451 * 342.80212 * 17 16 15 24 24 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00508 * 244.99536 * 12 9 7 26 26 H 1.08994 * 110.82474 * 332.94846 * 15 13 12 27 27 H 1.09004 * 110.81894 * 96.50065 * 15 13 12 28 28 H 1.09003 * 110.30084 * 145.27305 * 16 15 13 29 29 H 1.08997 * 110.30911 * 267.42601 * 16 15 13 30 30 H 1.08001 * 119.88632 * 0.02562 * 18 17 16 31 31 H 1.07997 * 120.03963 * 180.02562 * 19 18 17 32 32 H 1.08007 * 119.89640 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 16 1.1237 -2.7200 0.0134 10 8 0.4520 -2.7891 1.2637 11 8 0.4511 -2.8014 -1.2356 12 7 2.2485 -3.9353 0.0197 13 6 3.1395 -4.1028 1.1705 14 1 3.2262 -3.1657 1.7204 15 6 4.5312 -4.5813 0.7051 16 6 4.9655 -5.5092 1.8595 17 6 3.6750 -6.0088 2.4730 18 6 3.4379 -7.0858 3.3110 19 6 2.1573 -7.3547 3.7521 20 6 1.1069 -6.5465 3.3557 21 35 -0.6480 -6.9111 3.9582 22 6 1.3419 -5.4716 2.5196 23 6 2.6259 -5.2006 2.0771 24 1 -0.4850 -0.8401 -0.0004 25 1 2.3174 -4.5363 -0.7385 26 1 4.4575 -5.1353 -0.2307 27 1 5.2169 -3.7398 0.6055 28 1 5.5493 -6.3450 1.4737 29 1 5.5435 -4.9513 2.5962 30 1 4.2574 -7.7175 3.6206 31 1 1.9760 -8.1950 4.4058 32 1 0.5217 -4.8405 2.2106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192989096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:29 Heat of formation + Delta-G solvation = -96.965771 kcal Electronic energy + Delta-G solvation = -20178.189709 eV Core-core repulsion = 16888.549957 eV Total energy + Delta-G solvation = -3289.639752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28222 -37.75298 -37.45287 -36.56030 -35.41783 -34.46883 -32.31044 -31.63976 -29.15408 -27.73661 -27.11820 -23.75305 -21.95313 -21.82094 -21.52157 -19.95456 -18.38749 -17.76951 -16.98603 -16.83112 -16.35472 -16.00932 -15.87012 -15.67515 -15.04795 -14.57708 -14.41622 -14.12808 -14.00903 -13.42713 -13.08801 -13.03587 -12.95493 -12.74408 -12.72211 -12.56143 -12.25841 -12.03791 -11.97663 -11.96532 -11.43089 -11.33887 -11.19324 -10.85165 -10.30577 -9.90889 -9.48895 -9.41093 -7.65044 0.01522 0.11351 0.32157 0.59716 1.46252 1.50484 1.75709 2.33313 2.51549 2.59239 2.68884 3.33123 3.37510 3.58088 3.94833 3.96918 4.11566 4.13233 4.26591 4.34452 4.43949 4.60049 4.76318 4.88684 4.96737 5.04154 5.06503 5.22939 5.26870 5.32693 5.41904 5.55922 5.77882 5.83377 6.22133 6.48048 7.93572 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.004386 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.595940 B = 6381.754394 C = 7605.575223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.034 3.966 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.248 1.248 6 H -0.248 1.248 7 C -1.097 5.097 8 H 0.126 0.874 9 S 2.691 3.309 10 O -1.035 7.035 11 O -1.051 7.051 12 N -1.104 6.104 13 C 0.183 3.817 14 H 0.089 0.911 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.071 4.071 18 C -0.098 4.098 19 C -0.084 4.084 20 C -0.111 4.111 21 Br -0.060 7.060 22 C -0.097 4.097 23 C -0.129 4.129 24 H 0.255 0.745 25 H 0.417 0.583 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.924 -15.610 7.918 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.177 4.177 3 Si 0.934 3.066 4 H -0.196 1.196 5 H -0.171 1.171 6 H -0.172 1.172 7 C -1.231 5.231 8 H 0.145 0.855 9 S 2.793 3.207 10 O -1.025 7.025 11 O -1.042 7.042 12 N -0.862 5.862 13 C 0.076 3.924 14 H 0.107 0.893 15 C -0.156 4.156 16 C -0.109 4.109 17 C -0.072 4.072 18 C -0.116 4.116 19 C -0.104 4.104 20 C -0.191 4.191 21 Br 0.025 6.975 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.252 0.748 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.190 0.810 31 H 0.177 0.823 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.055 -14.214 8.286 19.822 hybrid contribution -0.185 -1.320 -0.575 1.452 sum 10.869 -15.534 7.712 20.468 Atomic orbital electron populations 1.71004 1.08657 1.30714 1.40431 1.27842 0.95044 1.08548 0.86223 0.83068 0.74830 0.68786 0.79949 1.19634 1.17135 1.17186 1.31809 1.09316 1.13070 1.68891 0.85543 1.00635 0.73360 0.74948 0.71771 1.93373 1.74579 1.88186 1.46328 1.93367 1.75237 1.88649 1.46905 1.55241 1.54549 1.48732 1.27656 1.20539 0.90791 0.96783 0.84273 0.89287 1.22732 0.92387 1.00844 0.99653 1.21176 0.93041 1.00000 0.96716 1.21118 0.96334 0.93814 0.95962 1.21006 0.96922 0.96957 0.96745 1.21349 0.91201 0.98720 0.99134 1.21774 0.92114 1.00791 1.04375 1.96646 1.17858 1.94764 1.88236 1.20913 0.98066 0.96159 0.96592 1.21110 0.93328 0.98900 0.99815 0.93388 0.74828 0.88896 0.87733 0.86807 0.87474 0.80951 0.82275 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.15 13.66 21.45 0.29 -54.86 16 2 C 0.03 1.90 5.46 84.65 0.46 2.36 16 3 Si 1.12 46.05 29.90 68.60 2.05 48.10 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 7 C -1.10 -59.32 9.65 67.73 0.65 -58.67 16 8 H 0.13 6.01 7.81 -2.91 -0.02 5.98 16 9 S 2.69 142.11 4.30 -56.49 -0.24 141.87 16 10 O -1.04 -59.98 15.49 -128.00 -1.98 -61.97 16 11 O -1.05 -62.49 17.63 -128.00 -2.26 -64.75 16 12 N -1.10 -42.39 5.50 -169.71 -0.93 -43.33 16 13 C 0.18 5.91 3.40 44.91 0.15 6.06 16 14 H 0.09 3.15 7.94 -2.39 -0.02 3.13 16 15 C -0.12 -2.37 6.77 31.51 0.21 -2.16 16 16 C -0.07 -1.09 6.77 30.52 0.21 -0.89 16 17 C -0.07 -1.60 6.14 -19.59 -0.12 -1.72 16 18 C -0.10 -1.81 10.04 22.30 0.22 -1.59 16 19 C -0.08 -1.88 9.79 22.26 0.22 -1.66 16 20 C -0.11 -3.41 6.22 22.28 0.14 -3.27 16 21 Br -0.06 -1.78 33.70 -20.37 -0.69 -2.46 16 22 C -0.10 -3.60 9.70 22.32 0.22 -3.39 16 23 C -0.13 -4.12 5.79 -19.60 -0.11 -4.23 16 24 H 0.26 16.83 6.52 -92.70 -0.60 16.23 16 25 H 0.42 13.77 8.69 -96.75 -0.84 12.93 16 26 H 0.09 1.68 7.90 -2.39 -0.02 1.66 16 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.11 4.85 6.10 -2.91 -0.02 4.83 16 Total: -1.00 -79.54 306.73 -1.01 -80.56 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.49 Total: 25.98 kcal Atomic # 6 Polarization: -71.40 SS G_CDS: 2.25 Total: -69.15 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -0.64 Total: -98.18 kcal Atomic # 8 Polarization: -122.48 SS G_CDS: -4.24 Total: -126.72 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.05 Total: 48.10 kcal Atomic # 16 Polarization: 142.11 SS G_CDS: -0.24 Total: 141.87 kcal Atomic # 35 Polarization: -1.78 SS G_CDS: -0.69 Total: -2.46 kcal Total: -79.54 -1.01 -80.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.407 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds