Wall clock time and date at job start Wed Apr 1 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48504 * 109.47004 * 270.00105 * 3 2 1 5 5 H 1.48494 * 109.47135 * 30.00085 * 3 2 1 6 6 H 1.48497 * 109.47004 * 150.00059 * 3 2 1 7 7 C 1.37870 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00722 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99752 * 179.97438 * 7 2 1 10 10 O 1.42105 * 106.39764 * 71.60999 * 9 7 2 11 11 O 1.42100 * 106.40155 * 298.69094 * 9 7 2 12 12 N 1.65603 * 107.21782 * 185.14750 * 9 7 2 13 13 C 1.46503 * 119.99535 * 64.17441 * 12 9 7 14 14 H 1.08994 * 110.34790 * 337.75183 * 13 12 9 15 15 C 1.54345 * 110.30376 * 99.88602 * 13 12 9 16 16 C 1.54344 * 102.38936 * 92.56866 * 15 13 12 17 17 C 1.51368 * 105.17669 * 26.34943 * 16 15 13 18 18 C 1.38510 * 130.38455 * 162.77415 * 17 16 15 19 19 C 1.38082 * 120.23295 * 180.02562 * 18 17 16 20 20 C 1.38340 * 119.92172 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 120.04098 * 180.02562 * 20 19 18 22 22 C 1.38190 * 119.91522 * 0.27406 * 20 19 18 23 23 C 1.38219 * 109.75333 * 342.81379 * 17 16 15 24 24 H 0.96992 * 120.00281 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00349 * 244.16897 * 12 9 7 26 26 H 1.08999 * 110.81676 * 210.79099 * 15 13 12 27 27 H 1.08994 * 110.82061 * 334.14488 * 15 13 12 28 28 H 1.09002 * 110.30216 * 267.42238 * 16 15 13 29 29 H 1.09009 * 110.30086 * 145.27751 * 16 15 13 30 30 H 1.08004 * 119.88037 * 0.02562 * 18 17 16 31 31 H 1.07996 * 120.03862 * 179.97438 * 19 18 17 32 32 H 1.08009 * 119.89760 * 179.70867 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 16 3.7666 -1.1939 -0.0012 10 8 4.1683 -0.7641 1.2924 11 8 4.1674 -0.5392 -1.1970 12 7 4.2568 -2.7693 -0.1437 13 6 3.9452 -3.5263 -1.3587 14 1 3.0926 -3.0832 -1.8731 15 6 5.1726 -3.5676 -2.2935 16 6 5.8677 -4.8788 -1.8698 17 6 4.7634 -5.7500 -1.3107 18 6 4.7278 -7.1150 -1.0781 19 6 3.5931 -7.7017 -0.5538 20 6 2.4872 -6.9242 -0.2600 21 35 0.9318 -7.7240 0.4589 22 6 2.5189 -5.5632 -0.4972 23 6 3.6587 -4.9729 -1.0171 24 1 -0.4850 0.8400 0.0004 25 1 4.7503 -3.1908 0.5772 26 1 4.8629 -3.6131 -3.3376 27 1 5.8206 -2.7084 -2.1203 28 1 6.6167 -4.6793 -1.1034 29 1 6.3279 -5.3591 -2.7334 30 1 5.5908 -7.7226 -1.3077 31 1 3.5687 -8.7663 -0.3741 32 1 1.6536 -4.9572 -0.2721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192989108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:31 Heat of formation + Delta-G solvation = -56.132142 kcal Electronic energy + Delta-G solvation = -20065.627875 eV Core-core repulsion = 16777.758802 eV Total energy + Delta-G solvation = -3287.869073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28544 -36.48259 -35.60256 -34.46516 -33.10496 -32.99520 -31.21979 -30.69634 -28.14502 -26.49262 -26.07750 -22.79708 -20.84825 -20.65154 -19.24272 -17.48574 -16.94618 -16.58797 -15.75504 -15.42944 -15.17506 -14.74397 -14.28539 -13.78219 -13.46677 -13.36120 -13.13709 -13.11387 -12.86888 -12.04599 -11.91778 -11.52889 -11.40282 -11.28802 -11.12469 -10.99008 -10.66788 -10.63680 -10.52784 -10.50924 -10.27798 -9.94181 -9.34397 -9.24421 -8.95332 -8.68580 -8.51485 -6.82558 -5.37347 1.02171 1.21564 1.60730 2.06213 3.06706 3.16045 3.23761 3.51518 3.92862 4.31865 4.34074 4.52450 4.57189 4.88559 5.02093 5.13518 5.17933 5.23206 5.33754 5.55096 5.59727 5.78337 5.88035 5.91646 5.96527 6.08487 6.17456 6.18671 6.35210 6.50978 6.62741 6.74913 7.45258 7.65803 8.17635 8.67984 10.29569 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.004307 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.249207 B = 6499.111326 C = 7996.979564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.153 3.847 3 Si 0.815 3.185 4 H -0.245 1.245 5 H -0.258 1.258 6 H -0.232 1.232 7 C -1.016 5.016 8 H 0.122 0.878 9 S 2.673 3.327 10 O -1.007 7.007 11 O -1.009 7.009 12 N -1.112 6.112 13 C 0.199 3.801 14 H 0.107 0.893 15 C -0.135 4.135 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.110 4.110 19 C -0.087 4.087 20 C -0.096 4.096 21 Br -0.054 7.054 22 C -0.058 4.058 23 C -0.094 4.094 24 H 0.281 0.719 25 H 0.406 0.594 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -16.875 -3.094 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.067 4.067 3 Si 0.636 3.364 4 H -0.168 1.168 5 H -0.182 1.182 6 H -0.155 1.155 7 C -1.151 5.151 8 H 0.140 0.860 9 S 2.775 3.225 10 O -0.998 6.998 11 O -0.998 6.998 12 N -0.865 5.865 13 C 0.090 3.910 14 H 0.125 0.875 15 C -0.174 4.174 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.175 4.175 21 Br 0.032 6.968 22 C -0.078 4.078 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.237 0.763 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.008 -16.242 -2.909 17.561 hybrid contribution -0.060 0.300 0.253 0.397 sum 5.948 -15.942 -2.656 17.222 Atomic orbital electron populations 1.69987 1.06561 1.29085 1.39346 1.24434 0.94806 0.98828 0.88647 0.87657 0.82574 0.84419 0.81753 1.16843 1.18236 1.15512 1.30436 1.15494 1.02200 1.66927 0.86031 1.01464 0.77403 0.70399 0.73255 1.93472 1.85535 1.79047 1.41716 1.93398 1.84997 1.72253 1.49197 1.55628 1.72773 1.32913 1.25207 1.19984 0.98000 0.87450 0.85520 0.87522 1.22821 0.97359 0.97603 0.99635 1.21139 0.95964 0.94373 1.00611 1.20840 0.96062 0.93438 0.96822 1.20557 0.98024 0.93595 1.00726 1.20963 0.91814 0.99672 0.98285 1.21603 0.93837 0.95280 1.06773 1.96705 1.34355 1.81637 1.84152 1.20775 0.98594 0.92549 0.95922 1.20755 0.93504 0.96207 0.99224 0.90865 0.76298 0.89846 0.88982 0.89775 0.90333 0.85416 0.85048 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.34 13.96 55.43 0.77 -22.57 16 2 C 0.15 4.31 5.47 -17.82 -0.10 4.21 16 3 Si 0.82 20.72 26.32 -169.99 -4.47 16.24 16 4 H -0.24 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.23 -6.03 5.89 56.52 0.33 -5.70 16 7 C -1.02 -27.59 10.14 30.60 0.31 -27.28 16 8 H 0.12 3.31 8.06 -52.49 -0.42 2.88 16 9 S 2.67 64.67 4.12 -107.50 -0.44 64.22 16 10 O -1.01 -26.78 16.58 -57.17 -0.95 -27.72 16 11 O -1.01 -25.66 16.15 -57.17 -0.92 -26.59 16 12 N -1.11 -20.45 5.50 -4.99 -0.03 -20.48 16 13 C 0.20 3.22 3.41 -68.04 -0.23 2.99 16 14 H 0.11 1.86 7.89 -51.93 -0.41 1.45 16 15 C -0.13 -1.79 6.78 -25.32 -0.17 -1.97 16 16 C -0.08 -0.90 6.77 -26.85 -0.18 -1.08 16 17 C -0.07 -0.86 6.14 -104.20 -0.64 -1.50 16 18 C -0.11 -1.16 10.04 -39.54 -0.40 -1.56 16 19 C -0.09 -0.97 9.79 -39.60 -0.39 -1.35 16 20 C -0.10 -1.26 6.22 -39.56 -0.25 -1.50 16 21 Br -0.05 -0.67 33.70 -68.01 -2.29 -2.96 16 22 C -0.06 -0.86 9.78 -39.51 -0.39 -1.25 16 23 C -0.09 -1.37 5.71 -104.21 -0.59 -1.97 16 24 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.41 6.56 8.86 -34.47 -0.31 6.25 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -31.75 306.48 -10.04 -41.79 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.30 Total: 5.71 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: -3.02 Total: -32.26 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.75 Total: -43.05 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -1.87 Total: -54.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.47 Total: 16.24 kcal Atomic # 16 Polarization: 64.67 SS G_CDS: -0.44 Total: 64.22 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.75 -10.04 -41.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.343 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds