Wall clock time and date at job start Wed Apr 1 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48504 * 109.47004 * 270.00105 * 3 2 1 5 5 H 1.48494 * 109.47135 * 30.00085 * 3 2 1 6 6 H 1.48497 * 109.47004 * 150.00059 * 3 2 1 7 7 C 1.37870 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00722 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99752 * 179.97438 * 7 2 1 10 10 O 1.42105 * 106.39764 * 71.60999 * 9 7 2 11 11 O 1.42100 * 106.40155 * 298.69094 * 9 7 2 12 12 N 1.65603 * 107.21782 * 185.14750 * 9 7 2 13 13 C 1.46503 * 119.99535 * 64.17441 * 12 9 7 14 14 H 1.08994 * 110.34790 * 337.75183 * 13 12 9 15 15 C 1.54345 * 110.30376 * 99.88602 * 13 12 9 16 16 C 1.54344 * 102.38936 * 92.56866 * 15 13 12 17 17 C 1.51368 * 105.17669 * 26.34943 * 16 15 13 18 18 C 1.38510 * 130.38455 * 162.77415 * 17 16 15 19 19 C 1.38082 * 120.23295 * 180.02562 * 18 17 16 20 20 C 1.38340 * 119.92172 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 120.04098 * 180.02562 * 20 19 18 22 22 C 1.38190 * 119.91522 * 0.27406 * 20 19 18 23 23 C 1.38219 * 109.75333 * 342.81379 * 17 16 15 24 24 H 0.96992 * 120.00281 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00349 * 244.16897 * 12 9 7 26 26 H 1.08999 * 110.81676 * 210.79099 * 15 13 12 27 27 H 1.08994 * 110.82061 * 334.14488 * 15 13 12 28 28 H 1.09002 * 110.30216 * 267.42238 * 16 15 13 29 29 H 1.09009 * 110.30086 * 145.27751 * 16 15 13 30 30 H 1.08004 * 119.88037 * 0.02562 * 18 17 16 31 31 H 1.07996 * 120.03862 * 179.97438 * 19 18 17 32 32 H 1.08009 * 119.89760 * 179.70867 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 16 3.7666 -1.1939 -0.0012 10 8 4.1683 -0.7641 1.2924 11 8 4.1674 -0.5392 -1.1970 12 7 4.2568 -2.7693 -0.1437 13 6 3.9452 -3.5263 -1.3587 14 1 3.0926 -3.0832 -1.8731 15 6 5.1726 -3.5676 -2.2935 16 6 5.8677 -4.8788 -1.8698 17 6 4.7634 -5.7500 -1.3107 18 6 4.7278 -7.1150 -1.0781 19 6 3.5931 -7.7017 -0.5538 20 6 2.4872 -6.9242 -0.2600 21 35 0.9318 -7.7240 0.4589 22 6 2.5189 -5.5632 -0.4972 23 6 3.6587 -4.9729 -1.0171 24 1 -0.4850 0.8400 0.0004 25 1 4.7503 -3.1908 0.5772 26 1 4.8629 -3.6131 -3.3376 27 1 5.8206 -2.7084 -2.1203 28 1 6.6167 -4.6793 -1.1034 29 1 6.3279 -5.3591 -2.7334 30 1 5.5908 -7.7226 -1.3077 31 1 3.5687 -8.7663 -0.3741 32 1 1.6536 -4.9572 -0.2721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192989108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:31 Heat of formation + Delta-G solvation = -78.530546 kcal Electronic energy + Delta-G solvation = -20066.599143 eV Core-core repulsion = 16777.758802 eV Total energy + Delta-G solvation = -3288.840341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30734 -37.81588 -37.41639 -36.51259 -35.20699 -34.24956 -32.28423 -31.72163 -29.14519 -28.59506 -27.24303 -23.76904 -21.83625 -21.78107 -21.18135 -19.44064 -18.71417 -17.99426 -17.18518 -16.79319 -16.45160 -15.88677 -15.80153 -15.56107 -15.05689 -14.95103 -14.42645 -14.20056 -14.13314 -13.56728 -13.44467 -13.18168 -13.01811 -12.71973 -12.61102 -12.47728 -12.31265 -12.13578 -11.97792 -11.77939 -11.45775 -11.36247 -11.30738 -11.19920 -10.36461 -9.94068 -9.48142 -8.97543 -7.54191 -0.04416 0.11964 0.35877 0.62434 1.04561 1.13605 1.18789 1.87158 2.40516 2.42288 2.72020 3.24975 3.31460 3.54382 3.94172 4.05223 4.10860 4.15823 4.28352 4.31486 4.42942 4.58132 4.78884 4.91137 4.96158 5.03344 5.09239 5.21386 5.28511 5.34478 5.40071 5.57061 5.82001 5.99575 6.22784 6.52360 8.20177 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.004307 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.249207 B = 6499.111326 C = 7996.979564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.108 3.892 3 Si 0.838 3.162 4 H -0.235 1.235 5 H -0.224 1.224 6 H -0.242 1.242 7 C -1.038 5.038 8 H 0.104 0.896 9 S 2.698 3.302 10 O -1.032 7.032 11 O -1.020 7.020 12 N -1.098 6.098 13 C 0.185 3.815 14 H 0.081 0.919 15 C -0.136 4.136 16 C -0.075 4.075 17 C -0.064 4.064 18 C -0.098 4.098 19 C -0.079 4.079 20 C -0.107 4.107 21 Br -0.055 7.055 22 C -0.082 4.082 23 C -0.116 4.116 24 H 0.291 0.709 25 H 0.418 0.582 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -18.548 -3.766 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.109 4.109 3 Si 0.656 3.344 4 H -0.158 1.158 5 H -0.146 1.146 6 H -0.165 1.165 7 C -1.171 5.171 8 H 0.122 0.878 9 S 2.798 3.202 10 O -1.022 7.022 11 O -1.010 7.010 12 N -0.856 5.856 13 C 0.078 3.922 14 H 0.099 0.901 15 C -0.175 4.175 16 C -0.112 4.112 17 C -0.065 4.065 18 C -0.116 4.116 19 C -0.099 4.099 20 C -0.186 4.186 21 Br 0.031 6.969 22 C -0.103 4.103 23 C -0.119 4.119 24 H 0.102 0.898 25 H 0.252 0.748 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.350 -17.908 -3.576 20.080 hybrid contribution -0.827 0.675 0.444 1.156 sum 7.523 -17.233 -3.132 19.063 Atomic orbital electron populations 1.70018 1.07481 1.30486 1.40271 1.25180 0.95636 1.01476 0.88605 0.87299 0.81812 0.82657 0.82667 1.15767 1.14624 1.16479 1.30973 1.18060 1.01594 1.66461 0.87792 1.00535 0.75671 0.71641 0.72337 1.93428 1.85278 1.80656 1.42854 1.93373 1.84528 1.73637 1.49467 1.55123 1.72302 1.31405 1.26737 1.20256 0.98896 0.88219 0.84857 0.90124 1.22838 0.95873 0.99167 0.99598 1.21161 0.95353 0.92481 1.02193 1.21075 0.95291 0.94159 0.95983 1.20976 0.98849 0.93026 0.98770 1.21355 0.90930 1.00850 0.96739 1.21719 0.94808 0.94750 1.07318 1.96694 1.34822 1.81212 1.84191 1.20689 0.98278 0.93514 0.97810 1.20607 0.94703 0.95395 1.01193 0.89831 0.74775 0.88449 0.89736 0.88463 0.86986 0.81355 0.82277 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.61 13.96 21.45 0.30 -49.32 16 2 C 0.11 6.22 5.47 84.65 0.46 6.68 16 3 Si 0.84 41.83 26.32 68.60 1.81 43.64 16 4 H -0.23 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.22 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.24 -12.41 5.89 99.48 0.59 -11.82 16 7 C -1.04 -58.54 10.14 67.73 0.69 -57.85 16 8 H 0.10 6.03 8.06 -2.91 -0.02 6.01 16 9 S 2.70 132.51 4.12 -56.49 -0.23 132.27 16 10 O -1.03 -55.25 16.58 -128.00 -2.12 -57.37 16 11 O -1.02 -52.15 16.15 -128.00 -2.07 -54.22 16 12 N -1.10 -40.71 5.50 -169.70 -0.93 -41.64 16 13 C 0.18 6.05 3.41 44.92 0.15 6.20 16 14 H 0.08 2.99 7.89 -2.39 -0.02 2.97 16 15 C -0.14 -3.37 6.78 31.51 0.21 -3.16 16 16 C -0.08 -1.33 6.77 30.52 0.21 -1.12 16 17 C -0.06 -1.36 6.14 -19.59 -0.12 -1.48 16 18 C -0.10 -1.63 10.04 22.30 0.22 -1.41 16 19 C -0.08 -1.50 9.79 22.26 0.22 -1.28 16 20 C -0.11 -2.71 6.22 22.28 0.14 -2.57 16 21 Br -0.05 -1.33 33.70 -20.37 -0.69 -2.02 16 22 C -0.08 -2.51 9.78 22.32 0.22 -2.30 16 23 C -0.12 -3.34 5.71 -19.59 -0.11 -3.45 16 24 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.42 13.39 8.86 -96.75 -0.86 12.53 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -69.89 306.48 -1.47 -71.36 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.18 Total: 19.04 kcal Atomic # 6 Polarization: -64.03 SS G_CDS: 2.29 Total: -61.75 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -0.63 Total: -90.96 kcal Atomic # 8 Polarization: -107.40 SS G_CDS: -4.19 Total: -111.58 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.81 Total: 43.64 kcal Atomic # 16 Polarization: 132.51 SS G_CDS: -0.23 Total: 132.27 kcal Atomic # 35 Polarization: -1.33 SS G_CDS: -0.69 Total: -2.02 kcal Total: -69.89 -1.47 -71.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.173 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds