Wall clock time and date at job start Wed Apr 1 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00502 * 2 1 4 4 H 1.48495 * 109.47038 * 239.99976 * 3 2 1 5 5 H 1.48501 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47171 * 119.99696 * 3 2 1 7 7 C 1.37882 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99495 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99974 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40136 * 66.45942 * 9 7 2 11 11 O 1.42094 * 106.40396 * 293.53099 * 9 7 2 12 12 N 1.65604 * 107.21582 * 179.97438 * 9 7 2 13 13 C 1.46506 * 119.99704 * 61.93778 * 12 9 7 14 14 C 1.50693 * 115.55375 * 40.65610 * 13 12 9 15 15 C 1.38239 * 119.99303 * 252.52198 * 14 13 12 16 16 C 1.38221 * 120.01240 * 179.76468 * 15 14 13 17 17 C 1.38321 * 119.98683 * 0.50871 * 16 15 14 18 18 Br 1.89105 * 120.01005 * 179.76681 * 17 16 15 19 19 C 1.38319 * 119.98229 * 359.74240 * 17 16 15 20 20 C 1.38222 * 119.99166 * 0.02562 * 19 17 16 21 21 C 1.53003 * 117.49634 * 254.95137 * 13 12 9 22 22 C 1.52996 * 117.49637 * 186.33031 * 13 12 9 23 23 H 0.97000 * 119.99439 * 0.02562 * 1 2 3 24 24 H 0.96992 * 120.00558 * 242.20678 * 12 9 7 25 25 H 1.08000 * 119.99330 * 0.02562 * 15 14 13 26 26 H 1.08000 * 120.00614 * 180.27080 * 16 15 14 27 27 H 1.07998 * 120.00769 * 179.97438 * 19 17 16 28 28 H 1.07995 * 119.99704 * 180.02562 * 20 19 17 29 29 H 1.09001 * 117.50292 * 359.97438 * 21 13 12 30 30 H 1.09001 * 117.49940 * 145.01855 * 21 13 12 31 31 H 1.09009 * 117.49808 * 214.97127 * 22 13 12 32 32 H 1.08995 * 117.50360 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1233 -2.7200 0.0005 10 8 0.4516 -2.7954 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2480 -3.9355 0.0005 13 6 3.1835 -4.0678 1.1202 14 6 2.5963 -3.8369 2.4887 15 6 2.9005 -2.6823 3.1854 16 6 2.3583 -2.4679 4.4386 17 6 1.5195 -3.4137 5.0000 18 35 0.7826 -3.1241 6.7173 19 6 1.2195 -4.5712 4.3047 20 6 1.7584 -4.7826 3.0495 21 6 4.6300 -3.6263 0.8880 22 6 4.2921 -5.1147 0.9945 23 1 -0.4849 0.8401 -0.0004 24 1 2.2899 -4.5575 -0.7425 25 1 3.5587 -1.9458 2.7487 26 1 2.5926 -1.5639 4.9810 27 1 0.5650 -5.3102 4.7428 28 1 1.5239 -5.6861 2.5064 29 1 4.8857 -3.2379 -0.0978 30 1 5.1571 -3.1686 1.7252 31 1 4.5970 -5.6363 1.9019 32 1 4.3251 -5.7054 0.0791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192996716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:20 Heat of formation + Delta-G solvation = -34.094495 kcal Electronic energy + Delta-G solvation = -20609.916967 eV Core-core repulsion = 17323.003518 eV Total energy + Delta-G solvation = -3286.913449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49144 -37.06836 -35.14545 -33.91032 -33.09496 -31.78907 -31.35755 -30.64206 -28.79824 -26.11596 -22.98051 -22.89537 -21.67574 -20.02356 -18.92345 -17.63951 -16.46396 -16.24924 -15.65594 -15.03283 -14.88821 -14.54110 -14.20611 -13.94675 -13.42918 -13.13019 -12.83449 -12.72843 -12.01580 -11.45182 -11.43162 -11.23112 -11.20828 -11.12685 -10.82920 -10.73344 -10.63516 -10.59820 -10.24513 -10.11226 -10.05897 -9.85816 -9.22593 -8.95021 -8.55716 -8.47797 -8.12912 -6.68465 -5.29227 1.42656 1.77045 1.89502 2.32022 3.07151 3.12628 3.16896 3.84220 4.02541 4.10922 4.51968 4.66838 4.78096 5.06752 5.13003 5.24531 5.29692 5.59267 5.74580 5.79020 5.82350 5.86383 6.04384 6.09564 6.28050 6.34295 6.44883 6.56426 6.63404 6.80048 6.94770 7.20713 7.33390 7.82373 7.98566 8.90575 10.25826 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.005122 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.154065 B = 5465.655473 C = 6469.187851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.136 3.864 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -1.013 5.013 8 H 0.101 0.899 9 S 2.708 3.292 10 O -1.011 7.011 11 O -0.988 6.988 12 N -1.101 6.101 13 C 0.159 3.841 14 C -0.032 4.032 15 C -0.075 4.075 16 C -0.090 4.090 17 C -0.081 4.081 18 Br -0.071 7.071 19 C -0.094 4.094 20 C -0.073 4.073 21 C -0.182 4.182 22 C -0.170 4.170 23 H 0.290 0.710 24 H 0.404 0.596 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -7.886 10.128 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.082 4.082 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.147 5.147 8 H 0.120 0.880 9 S 2.809 3.191 10 O -1.001 7.001 11 O -0.977 6.977 12 N -0.851 5.851 13 C 0.068 3.932 14 C -0.034 4.034 15 C -0.095 4.095 16 C -0.110 4.110 17 C -0.160 4.160 18 Br 0.014 6.986 19 C -0.114 4.114 20 C -0.093 4.093 21 C -0.222 4.222 22 C -0.209 4.209 23 H 0.101 0.899 24 H 0.235 0.765 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.400 -7.715 10.907 14.814 hybrid contribution 1.007 1.019 -0.930 1.708 sum 7.407 -6.696 9.976 14.115 Atomic orbital electron populations 1.69888 1.06748 1.30692 1.40083 1.24686 0.94366 1.00550 0.88604 0.86288 0.79984 0.80088 0.79747 1.18950 1.20208 1.18788 1.30436 1.05906 1.11543 1.66795 0.88047 1.00667 0.72109 0.73358 0.73013 1.93378 1.73012 1.87656 1.46062 1.93411 1.72329 1.87088 1.44919 1.55702 1.52612 1.49266 1.27532 1.18502 0.84566 1.04979 0.85140 1.18974 0.97108 0.94809 0.92530 1.20970 0.99199 0.95922 0.93384 1.20925 0.96448 0.97846 0.95774 1.21617 1.02819 0.98849 0.92731 1.96606 1.84458 1.96941 1.20565 1.20870 0.99502 0.96127 0.94852 1.20743 0.95404 0.99068 0.94055 1.23530 0.98124 0.96501 1.04002 1.23299 1.01570 0.92540 1.03469 0.89936 0.76476 0.84813 0.85368 0.85545 0.85729 0.87817 0.88064 0.88144 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.56 13.19 55.43 0.73 -23.83 16 2 C 0.14 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 7 C -1.01 -26.81 9.66 30.60 0.30 -26.51 16 8 H 0.10 2.43 7.81 -52.48 -0.41 2.02 16 9 S 2.71 69.93 4.89 -107.50 -0.53 69.40 16 10 O -1.01 -29.64 18.02 -57.17 -1.03 -30.67 16 11 O -0.99 -27.31 15.36 -57.17 -0.88 -28.18 16 12 N -1.10 -21.12 6.04 -0.40 0.00 -21.13 16 13 C 0.16 2.62 2.49 -132.97 -0.33 2.29 16 14 C -0.03 -0.57 3.10 -104.62 -0.32 -0.89 16 15 C -0.08 -1.33 9.13 -39.59 -0.36 -1.69 16 16 C -0.09 -1.52 9.79 -39.56 -0.39 -1.90 16 17 C -0.08 -1.33 6.22 -39.52 -0.25 -1.58 16 18 Br -0.07 -1.00 33.70 -68.01 -2.29 -3.29 16 19 C -0.09 -1.51 9.79 -39.56 -0.39 -1.89 16 20 C -0.07 -1.23 9.19 -39.59 -0.36 -1.59 16 21 C -0.18 -2.50 9.66 -26.73 -0.26 -2.76 16 22 C -0.17 -2.06 10.13 -26.73 -0.27 -2.33 16 23 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.40 6.63 8.91 -34.48 -0.31 6.32 16 25 H 0.13 2.22 7.45 -52.49 -0.39 1.83 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.10 1.24 7.55 -51.93 -0.39 0.84 16 31 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -34.00 315.31 -10.17 -44.17 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.17 Total: 8.86 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -2.73 Total: -35.25 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.73 Total: -44.95 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -1.91 Total: -58.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 69.93 SS G_CDS: -0.53 Total: 69.40 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -2.29 Total: -3.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.00 -10.17 -44.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.072 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds