Wall clock time and date at job start Wed Apr 1 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46829 * 269.99857 * 3 2 1 5 5 H 1.48494 * 109.47284 * 29.99788 * 3 2 1 6 6 H 1.48496 * 109.47141 * 150.00136 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99637 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40321 * 66.45945 * 9 7 2 11 11 O 1.42108 * 106.39883 * 293.53953 * 9 7 2 12 12 N 1.65597 * 107.22117 * 180.02562 * 9 7 2 13 13 C 1.46499 * 119.99926 * 64.72196 * 12 9 7 14 14 H 1.09005 * 115.55487 * 359.55650 * 13 12 9 15 15 C 1.53003 * 117.49828 * 213.88761 * 13 12 9 16 16 C 1.52998 * 117.49851 * 145.26485 * 13 12 9 17 17 H 1.09000 * 117.49933 * 214.97932 * 16 13 12 18 18 C 1.50692 * 117.50078 * 0.02562 * 16 13 12 19 19 C 1.38246 * 119.99248 * 59.72096 * 18 16 13 20 20 C 1.38219 * 120.01189 * 179.77002 * 19 18 16 21 21 C 1.38320 * 119.98834 * 0.51263 * 20 19 18 22 22 Br 1.89105 * 120.01037 * 179.72257 * 21 20 19 23 23 C 1.38325 * 119.98148 * 359.74184 * 21 20 19 24 24 C 1.38220 * 119.99304 * 0.02562 * 23 21 20 25 25 H 0.96998 * 120.00473 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00224 * 245.00409 * 12 9 7 27 27 H 1.08995 * 117.49815 * 359.97438 * 15 13 12 28 28 H 1.08997 * 117.49921 * 145.02396 * 15 13 12 29 29 H 1.08004 * 119.99140 * 0.02812 * 19 18 16 30 30 H 1.07996 * 120.00515 * 180.27956 * 20 19 18 31 31 H 1.08000 * 120.00805 * 180.02562 * 23 21 20 32 32 H 1.07996 * 119.99941 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 3.1436 -4.1050 1.1467 14 1 3.0116 -3.3871 1.9563 15 6 4.5636 -4.6015 0.8674 16 6 3.5433 -5.5323 1.5259 17 1 3.6742 -5.7538 2.5851 18 6 2.9866 -6.6560 0.6903 19 6 3.2558 -6.7087 -0.6646 20 6 2.7494 -7.7418 -1.4305 21 6 1.9643 -8.7174 -0.8430 22 35 1.2646 -10.1268 -1.8918 23 6 1.6908 -8.6615 0.5118 24 6 2.2016 -7.6307 1.2778 25 1 -0.4851 0.8400 0.0004 26 1 2.3174 -4.5324 -0.7619 27 1 4.8316 -4.8023 -0.1698 28 1 5.3656 -4.2106 1.4935 29 1 3.8655 -5.9446 -1.1240 30 1 2.9635 -7.7853 -2.4881 31 1 1.0782 -9.4232 0.9710 32 1 1.9878 -7.5867 2.3355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193008222.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:26 Heat of formation + Delta-G solvation = -42.276208 kcal Electronic energy + Delta-G solvation = -19675.703050 eV Core-core repulsion = 16388.434815 eV Total energy + Delta-G solvation = -3287.268235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87753 -37.29917 -35.21940 -33.98659 -33.14079 -32.44830 -31.27769 -31.12002 -29.04370 -26.15882 -23.69001 -22.85498 -21.55961 -20.25707 -19.14133 -17.75616 -16.83145 -16.35034 -15.67414 -15.50293 -14.96248 -14.77716 -14.08195 -14.03773 -13.60835 -13.53474 -13.37418 -12.88803 -12.11672 -11.92094 -11.77061 -11.35773 -11.29532 -11.23338 -11.12449 -10.93075 -10.66444 -10.62098 -10.37454 -10.32191 -10.23170 -10.07003 -9.27478 -9.09243 -8.99608 -8.67952 -8.18572 -6.72815 -5.35598 1.00588 1.23713 1.54775 2.25837 3.05027 3.12007 3.17721 3.45093 4.02206 4.14417 4.48449 4.61343 4.68223 4.75311 4.82377 5.00412 5.03616 5.21945 5.25631 5.43588 5.64887 5.75696 5.79449 5.85806 5.92162 6.04113 6.14483 6.23481 6.48666 6.53065 6.73534 6.81143 7.29495 7.77778 7.94386 8.86054 10.21385 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003013 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.045569 B = 9291.675125 C = 9847.900855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.104 0.896 9 S 2.713 3.287 10 O -1.004 7.004 11 O -1.003 7.003 12 N -1.105 6.105 13 C 0.133 3.867 14 H 0.145 0.855 15 C -0.189 4.189 16 C -0.148 4.148 17 H 0.121 0.879 18 C -0.015 4.015 19 C -0.125 4.125 20 C -0.084 4.084 21 C -0.101 4.101 22 Br -0.061 7.061 23 C -0.086 4.086 24 C -0.110 4.110 25 H 0.291 0.709 26 H 0.401 0.599 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -17.200 0.218 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.154 5.154 8 H 0.123 0.877 9 S 2.813 3.187 10 O -0.994 6.994 11 O -0.993 6.993 12 N -0.855 5.855 13 C 0.023 3.977 14 H 0.162 0.838 15 C -0.228 4.228 16 C -0.169 4.169 17 H 0.139 0.861 18 C -0.016 4.016 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.180 4.180 22 Br 0.025 6.975 23 C -0.106 4.106 24 C -0.129 4.129 25 H 0.102 0.898 26 H 0.234 0.766 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.990 -17.653 -0.032 18.987 hybrid contribution 1.162 1.184 -0.161 1.666 sum 8.152 -16.470 -0.193 18.378 Atomic orbital electron populations 1.69896 1.06812 1.30800 1.39922 1.24756 0.94459 1.00855 0.88495 0.86150 0.80136 0.80006 0.79190 1.19209 1.19985 1.18613 1.30557 1.06164 1.11647 1.67033 0.87745 1.00533 0.72039 0.73182 0.72936 1.93384 1.72833 1.87554 1.45658 1.93369 1.72686 1.87403 1.45809 1.55806 1.54047 1.50449 1.25230 1.21301 0.90427 0.94649 0.91345 0.83764 1.23581 0.93848 1.03268 1.02118 1.21703 1.05092 0.90854 0.99272 0.86108 1.19251 0.95053 0.93914 0.93381 1.21158 1.01087 0.98527 0.93624 1.21087 0.95964 0.93034 1.00280 1.21718 1.04463 0.96954 0.94857 1.96680 1.85365 1.45546 1.69951 1.21071 0.98993 0.98711 0.91839 1.20997 0.97538 0.93874 1.00488 0.89835 0.76637 0.88183 0.87593 0.84738 0.84949 0.85072 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.56 13.19 55.43 0.73 -23.83 16 2 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 7 C -1.02 -27.27 9.71 30.60 0.30 -26.97 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.71 70.56 5.00 -107.50 -0.54 70.02 16 10 O -1.00 -29.31 18.02 -57.17 -1.03 -30.35 16 11 O -1.00 -28.72 17.78 -57.17 -1.02 -29.74 16 12 N -1.11 -21.32 5.67 -4.89 -0.03 -21.35 16 13 C 0.13 2.11 6.41 -67.93 -0.44 1.67 16 14 H 0.14 2.31 8.11 -51.93 -0.42 1.89 16 15 C -0.19 -2.25 9.78 -26.73 -0.26 -2.51 16 16 C -0.15 -1.87 6.04 -91.77 -0.55 -2.42 16 17 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.02 -0.20 5.24 -104.62 -0.55 -0.75 16 19 C -0.13 -1.58 7.54 -39.59 -0.30 -1.87 16 20 C -0.08 -1.02 9.79 -39.56 -0.39 -1.41 16 21 C -0.10 -1.24 6.22 -39.52 -0.25 -1.49 16 22 Br -0.06 -0.67 33.70 -68.01 -2.29 -2.96 16 23 C -0.09 -1.02 9.79 -39.56 -0.39 -1.41 16 24 C -0.11 -1.34 9.74 -39.58 -0.39 -1.73 16 25 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.40 7.01 6.47 -34.47 -0.22 6.79 16 27 H 0.10 1.12 6.18 -51.93 -0.32 0.80 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.13 1.52 5.68 -52.48 -0.30 1.22 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -34.44 312.97 -10.70 -45.14 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.92 Total: 8.60 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -3.30 Total: -35.36 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.70 Total: -45.18 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.05 Total: -60.08 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 70.56 SS G_CDS: -0.54 Total: 70.02 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.44 -10.70 -45.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008222.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.866 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds