Wall clock time and date at job start Wed Apr 1 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46829 * 269.99857 * 3 2 1 5 5 H 1.48494 * 109.47284 * 29.99788 * 3 2 1 6 6 H 1.48496 * 109.47141 * 150.00136 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99637 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40321 * 66.45945 * 9 7 2 11 11 O 1.42108 * 106.39883 * 293.53953 * 9 7 2 12 12 N 1.65597 * 107.22117 * 180.02562 * 9 7 2 13 13 C 1.46499 * 119.99926 * 64.72196 * 12 9 7 14 14 H 1.09005 * 115.55487 * 359.55650 * 13 12 9 15 15 C 1.53003 * 117.49828 * 213.88761 * 13 12 9 16 16 C 1.52998 * 117.49851 * 145.26485 * 13 12 9 17 17 H 1.09000 * 117.49933 * 214.97932 * 16 13 12 18 18 C 1.50692 * 117.50078 * 0.02562 * 16 13 12 19 19 C 1.38246 * 119.99248 * 59.72096 * 18 16 13 20 20 C 1.38219 * 120.01189 * 179.77002 * 19 18 16 21 21 C 1.38320 * 119.98834 * 0.51263 * 20 19 18 22 22 Br 1.89105 * 120.01037 * 179.72257 * 21 20 19 23 23 C 1.38325 * 119.98148 * 359.74184 * 21 20 19 24 24 C 1.38220 * 119.99304 * 0.02562 * 23 21 20 25 25 H 0.96998 * 120.00473 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00224 * 245.00409 * 12 9 7 27 27 H 1.08995 * 117.49815 * 359.97438 * 15 13 12 28 28 H 1.08997 * 117.49921 * 145.02396 * 15 13 12 29 29 H 1.08004 * 119.99140 * 0.02812 * 19 18 16 30 30 H 1.07996 * 120.00515 * 180.27956 * 20 19 18 31 31 H 1.08000 * 120.00805 * 180.02562 * 23 21 20 32 32 H 1.07996 * 119.99941 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 3.1436 -4.1050 1.1467 14 1 3.0116 -3.3871 1.9563 15 6 4.5636 -4.6015 0.8674 16 6 3.5433 -5.5323 1.5259 17 1 3.6742 -5.7538 2.5851 18 6 2.9866 -6.6560 0.6903 19 6 3.2558 -6.7087 -0.6646 20 6 2.7494 -7.7418 -1.4305 21 6 1.9643 -8.7174 -0.8430 22 35 1.2646 -10.1268 -1.8918 23 6 1.6908 -8.6615 0.5118 24 6 2.2016 -7.6307 1.2778 25 1 -0.4851 0.8400 0.0004 26 1 2.3174 -4.5324 -0.7619 27 1 4.8316 -4.8023 -0.1698 28 1 5.3656 -4.2106 1.4935 29 1 3.8655 -5.9446 -1.1240 30 1 2.9635 -7.7853 -2.4881 31 1 1.0782 -9.4232 0.9710 32 1 1.9878 -7.5867 2.3355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193008222.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:25 Heat of formation + Delta-G solvation = -66.466458 kcal Electronic energy + Delta-G solvation = -19676.752018 eV Core-core repulsion = 16388.434815 eV Total energy + Delta-G solvation = -3288.317203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85347 -38.38139 -37.37453 -36.14815 -35.18629 -33.59101 -32.51317 -32.04929 -30.00065 -28.24571 -24.63291 -23.82838 -22.71670 -21.25007 -21.08464 -19.49418 -18.31032 -17.97610 -17.11698 -16.76693 -16.40074 -15.97098 -15.83510 -15.44413 -15.17330 -14.52432 -14.33653 -14.02171 -13.98585 -13.36330 -13.03111 -12.98953 -12.86872 -12.58344 -12.51377 -12.41467 -12.27826 -12.22611 -12.07857 -11.88126 -11.27224 -11.23864 -11.18010 -10.91734 -10.03962 -9.97619 -9.30690 -8.73829 -7.47625 0.04054 0.26567 0.37537 0.62471 1.36789 1.37050 1.53427 2.22219 2.48083 2.59776 2.92074 3.11762 3.62378 3.74119 3.78589 3.90317 3.94990 4.06019 4.28154 4.34255 4.39393 4.52291 4.61002 4.74111 4.92234 5.02417 5.07919 5.20884 5.26518 5.30881 5.43110 5.58679 5.82404 5.92734 6.28836 6.79584 8.22241 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003013 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.045569 B = 9291.675125 C = 9847.900855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.243 1.243 7 C -1.036 5.036 8 H 0.126 0.874 9 S 2.720 3.280 10 O -1.048 7.048 11 O -1.041 7.041 12 N -1.092 6.092 13 C 0.083 3.917 14 H 0.135 0.865 15 C -0.160 4.160 16 C -0.132 4.132 17 H 0.145 0.855 18 C -0.035 4.035 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.113 4.113 22 Br -0.052 7.052 23 C -0.093 4.093 24 C -0.118 4.118 25 H 0.298 0.702 26 H 0.410 0.590 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 -17.247 0.614 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.166 1.166 7 C -1.170 5.170 8 H 0.144 0.856 9 S 2.821 3.179 10 O -1.038 7.038 11 O -1.030 7.030 12 N -0.848 5.848 13 C -0.026 4.026 14 H 0.153 0.847 15 C -0.199 4.199 16 C -0.152 4.152 17 H 0.162 0.838 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.113 4.113 21 C -0.192 4.192 22 Br 0.033 6.967 23 C -0.112 4.112 24 C -0.137 4.137 25 H 0.109 0.891 26 H 0.244 0.756 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.338 -17.738 0.367 20.049 hybrid contribution 0.446 1.040 -0.286 1.167 sum 9.784 -16.697 0.080 19.353 Atomic orbital electron populations 1.70001 1.08909 1.32351 1.41496 1.26054 0.95337 1.05504 0.87523 0.85098 0.79285 0.74637 0.79956 1.18137 1.18958 1.16552 1.30901 1.07390 1.12097 1.66606 0.85575 0.99896 0.72533 0.73967 0.71455 1.93313 1.74888 1.88447 1.47155 1.93310 1.74484 1.88207 1.47031 1.55035 1.53829 1.49032 1.26878 1.21576 0.92927 0.97434 0.90661 0.84703 1.23727 0.92223 1.00740 1.03245 1.21805 1.03935 0.88778 1.00703 0.83777 1.19459 0.95832 0.94488 0.93779 1.21356 1.01339 0.98883 0.93731 1.21318 0.95942 0.93004 1.01059 1.21944 1.04543 0.97343 0.95369 1.96681 1.85242 1.45037 1.69746 1.21333 0.98990 0.99080 0.91813 1.21286 0.97156 0.93714 1.01515 0.89148 0.75551 0.87294 0.84809 0.83774 0.83692 0.83436 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.18 13.19 21.45 0.28 -52.90 16 2 C 0.07 3.74 5.46 84.65 0.46 4.21 16 3 Si 0.99 40.21 29.54 68.60 2.03 42.23 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 7 C -1.04 -55.42 9.71 67.73 0.66 -54.76 16 8 H 0.13 5.94 7.81 -2.91 -0.02 5.92 16 9 S 2.72 144.79 5.00 -56.49 -0.28 144.51 16 10 O -1.05 -63.23 18.02 -128.00 -2.31 -65.54 16 11 O -1.04 -61.58 17.78 -128.00 -2.28 -63.85 16 12 N -1.09 -42.02 5.67 -169.38 -0.96 -42.98 16 13 C 0.08 2.51 6.41 44.99 0.29 2.80 16 14 H 0.14 4.29 8.11 -2.38 -0.02 4.27 16 15 C -0.16 -3.33 9.78 30.60 0.30 -3.03 16 16 C -0.13 -3.01 6.04 -11.54 -0.07 -3.08 16 17 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.03 -0.85 5.24 -19.86 -0.10 -0.96 16 19 C -0.13 -3.19 7.54 22.27 0.17 -3.02 16 20 C -0.09 -2.18 9.79 22.28 0.22 -1.96 16 21 C -0.11 -2.65 6.22 22.31 0.14 -2.51 16 22 Br -0.05 -1.11 33.70 -20.37 -0.69 -1.79 16 23 C -0.09 -2.07 9.79 22.29 0.22 -1.85 16 24 C -0.12 -2.70 9.74 22.27 0.22 -2.48 16 25 H 0.30 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.41 14.24 6.47 -96.74 -0.63 13.62 16 27 H 0.11 2.09 6.18 -2.39 -0.01 2.07 16 28 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.14 3.01 5.68 -2.91 -0.02 2.99 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -75.90 312.97 -1.17 -77.06 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.54 Total: 29.90 kcal Atomic # 6 Polarization: -69.14 SS G_CDS: 2.49 Total: -66.64 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -0.68 Total: -95.87 kcal Atomic # 8 Polarization: -124.81 SS G_CDS: -4.58 Total: -129.39 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 144.79 SS G_CDS: -0.28 Total: 144.51 kcal Atomic # 35 Polarization: -1.11 SS G_CDS: -0.69 Total: -1.79 kcal Total: -75.90 -1.17 -77.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008222.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.596 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds