Wall clock time and date at job start Wed Apr 1 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47322 * 239.99626 * 3 2 1 5 5 H 1.48495 * 109.47428 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46921 * 120.00030 * 3 2 1 7 7 C 1.37881 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00082 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40191 * 66.46058 * 9 7 2 11 11 O 1.42095 * 106.40387 * 293.54273 * 9 7 2 12 12 N 1.65597 * 107.21762 * 180.02562 * 9 7 2 13 13 C 1.46501 * 120.00212 * 65.00264 * 12 9 7 14 14 H 1.09002 * 115.54982 * 359.41519 * 13 12 9 15 15 C 1.53005 * 117.49876 * 213.74464 * 13 12 9 16 16 C 1.52999 * 59.99973 * 252.48587 * 15 13 12 17 17 H 1.08995 * 117.49529 * 107.48826 * 16 15 13 18 18 C 1.50693 * 117.50064 * 252.51042 * 16 15 13 19 19 C 1.38245 * 119.99044 * 8.34764 * 18 16 15 20 20 C 1.38218 * 120.01241 * 179.76636 * 19 18 16 21 21 C 1.38328 * 119.98938 * 0.51329 * 20 19 18 22 22 Br 1.89092 * 120.01035 * 179.72110 * 21 20 19 23 23 C 1.38326 * 119.97491 * 359.74164 * 21 20 19 24 24 C 1.38216 * 119.99348 * 359.97438 * 23 21 20 25 25 H 0.97003 * 120.00049 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99714 * 245.00187 * 12 9 7 27 27 H 1.09004 * 117.49602 * 359.97438 * 15 13 12 28 28 H 1.09004 * 117.49357 * 144.97269 * 15 13 12 29 29 H 1.08008 * 119.99216 * 0.02562 * 19 18 16 30 30 H 1.07997 * 120.00414 * 180.27474 * 20 19 18 31 31 H 1.08002 * 120.00030 * 179.97438 * 23 21 20 32 32 H 1.08004 * 119.99067 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 16 1.1233 -2.7200 -0.0005 10 8 0.4507 -2.7950 -1.2500 11 8 0.4516 -2.7956 1.2494 12 7 2.2480 -3.9355 -0.0005 13 6 3.1390 -4.1090 1.1493 14 1 3.0058 -3.3924 1.9597 15 6 4.5590 -4.6079 0.8738 16 6 3.5348 -5.5377 1.5277 17 1 3.1321 -6.3488 0.9211 18 6 3.7105 -5.8464 2.9922 19 6 4.6584 -5.1653 3.7330 20 6 4.8166 -5.4447 5.0774 21 6 4.0336 -6.4133 5.6792 22 35 4.2550 -6.8014 7.5165 23 6 3.0889 -7.0982 4.9362 24 6 2.9274 -6.8140 3.5932 25 1 -0.4850 0.8401 -0.0004 26 1 2.3168 -4.5325 -0.7619 27 1 4.8300 -4.8074 -0.1630 28 1 5.3599 -4.2191 1.5027 29 1 5.2725 -4.4119 3.2622 30 1 5.5541 -4.9094 5.6571 31 1 2.4777 -7.8548 5.4055 32 1 2.1901 -7.3491 3.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193008225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:32 Heat of formation + Delta-G solvation = -43.686068 kcal Electronic energy + Delta-G solvation = -19283.416850 eV Core-core repulsion = 15996.087479 eV Total energy + Delta-G solvation = -3287.329371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 344.982 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80191 -37.35215 -35.24024 -34.01044 -33.16889 -32.74994 -31.36136 -31.00930 -28.87616 -26.16382 -23.72292 -22.73808 -21.70176 -20.35741 -19.12957 -17.75309 -16.92115 -16.18107 -16.07271 -15.26649 -15.08216 -14.88345 -14.12792 -14.03301 -13.57266 -13.51927 -13.37929 -12.62473 -12.11957 -12.01188 -11.71177 -11.59924 -11.30214 -11.22518 -11.21323 -10.92123 -10.73510 -10.64028 -10.41946 -10.34192 -10.24831 -10.08326 -9.26708 -9.12427 -9.04451 -8.75871 -8.17067 -6.73218 -5.36053 0.96366 1.21808 1.50491 2.23277 3.06704 3.11490 3.16499 3.42410 4.00634 4.12547 4.45720 4.61891 4.64928 4.76703 4.79124 4.96719 5.02566 5.17563 5.22721 5.40929 5.59853 5.70978 5.76562 5.89672 5.94716 5.99490 6.11254 6.21630 6.45405 6.51890 6.71057 6.78601 7.29042 7.76411 7.93388 8.85599 10.21052 Molecular weight = 344.98amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002717 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.514022 B =10302.950637 C =10854.855334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.103 0.897 9 S 2.713 3.287 10 O -1.004 7.004 11 O -1.002 7.002 12 N -1.105 6.105 13 C 0.133 3.867 14 H 0.140 0.860 15 C -0.187 4.187 16 C -0.146 4.146 17 H 0.117 0.883 18 C -0.021 4.021 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.100 4.100 22 Br -0.062 7.062 23 C -0.087 4.087 24 C -0.108 4.108 25 H 0.292 0.708 26 H 0.403 0.597 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.903 -13.346 11.055 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.122 0.878 9 S 2.813 3.187 10 O -0.994 6.994 11 O -0.991 6.991 12 N -0.854 5.854 13 C 0.023 3.977 14 H 0.157 0.843 15 C -0.226 4.226 16 C -0.167 4.167 17 H 0.135 0.865 18 C -0.022 4.022 19 C -0.136 4.136 20 C -0.106 4.106 21 C -0.179 4.179 22 Br 0.024 6.976 23 C -0.107 4.107 24 C -0.126 4.126 25 H 0.102 0.898 26 H 0.234 0.766 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.797 -13.408 11.890 20.922 hybrid contribution 0.973 0.953 -0.746 1.554 sum 11.770 -12.455 11.144 20.441 Atomic orbital electron populations 1.69884 1.06802 1.30917 1.39824 1.24748 0.94466 1.00838 0.88481 0.86190 0.79883 0.79648 0.79790 1.18853 1.20114 1.18808 1.30515 1.06108 1.11649 1.67151 0.87831 1.00541 0.72014 0.73227 0.72918 1.93385 1.72812 1.87559 1.45666 1.93378 1.72639 1.87353 1.45780 1.55780 1.54284 1.50566 1.24744 1.21313 0.90588 0.94777 0.91016 0.84270 1.23606 0.93725 1.03293 1.02023 1.21679 1.06313 0.96404 0.92301 0.86473 1.19305 0.94265 0.94582 0.94022 1.21138 0.98783 1.00401 0.93321 1.21062 0.98478 0.96057 0.94963 1.21725 1.02714 1.02666 0.90811 1.96681 1.97297 1.94532 1.09122 1.21065 0.96676 0.99024 0.93949 1.21009 0.99339 0.98124 0.94178 0.89769 0.76571 0.87880 0.87800 0.84650 0.85061 0.85090 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.50 13.19 55.43 0.73 -23.76 16 2 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 3 Si 0.92 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -1.02 -27.23 9.72 30.60 0.30 -26.93 16 8 H 0.10 2.50 7.81 -52.49 -0.41 2.09 16 9 S 2.71 69.63 5.00 -107.50 -0.54 69.09 16 10 O -1.00 -28.72 18.02 -57.18 -1.03 -29.75 16 11 O -1.00 -28.60 17.77 -57.18 -1.02 -29.61 16 12 N -1.10 -20.65 6.04 -4.89 -0.03 -20.68 16 13 C 0.13 2.14 6.10 -67.93 -0.41 1.73 16 14 H 0.14 2.40 8.11 -51.93 -0.42 1.98 16 15 C -0.19 -2.24 9.78 -26.73 -0.26 -2.50 16 16 C -0.15 -1.86 5.97 -91.77 -0.55 -2.41 16 17 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 18 C -0.02 -0.26 5.61 -104.62 -0.59 -0.85 16 19 C -0.12 -1.35 9.30 -39.59 -0.37 -1.72 16 20 C -0.09 -0.95 9.79 -39.56 -0.39 -1.34 16 21 C -0.10 -1.14 6.22 -39.52 -0.25 -1.39 16 22 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16 23 C -0.09 -0.98 9.79 -39.56 -0.39 -1.37 16 24 C -0.11 -1.27 9.74 -39.59 -0.39 -1.65 16 25 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.40 6.38 8.96 -34.46 -0.31 6.07 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.10 1.05 6.17 -51.93 -0.32 0.73 16 29 H 0.14 1.33 6.02 -52.48 -0.32 1.01 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -34.18 317.90 -10.81 -45.00 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.02 Total: 7.61 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -3.38 Total: -34.89 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.70 Total: -44.44 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -2.05 Total: -59.36 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 69.63 SS G_CDS: -0.54 Total: 69.09 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.18 -10.81 -45.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.312 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds