Wall clock time and date at job start Wed Apr 1 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48505 * 109.46528 * 264.80409 * 3 2 1 5 5 H 1.48499 * 109.46953 * 24.80076 * 3 2 1 6 6 H 1.48498 * 109.47389 * 144.80123 * 3 2 1 7 7 C 1.37879 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00021 * 4.83283 * 7 2 1 9 9 C 1.50710 * 120.00266 * 184.83591 * 7 2 1 10 10 H 1.08996 * 109.46418 * 334.98892 * 9 7 2 11 11 C 1.52998 * 109.46946 * 94.98756 * 9 7 2 12 12 Cl 1.80300 * 109.46748 * 185.72133 * 11 9 7 13 13 O 1.42891 * 109.47179 * 214.99004 * 9 7 2 14 14 C 1.35493 * 117.00043 * 149.99721 * 13 9 7 15 15 C 1.40942 * 119.93227 * 180.02562 * 14 13 9 16 16 C 1.35213 * 119.41866 * 180.02562 * 15 14 13 17 17 N 1.36702 * 119.22959 * 359.97438 * 16 15 14 18 18 N 1.39956 * 132.45727 * 179.97438 * 17 16 15 19 19 C 1.31384 * 108.85312 * 180.02562 * 18 17 16 20 20 C 1.38771 * 108.96667 * 359.97438 * 19 18 17 21 21 Br 1.89101 * 126.18800 * 180.02562 * 20 19 18 22 22 C 1.37121 * 119.88981 * 0.29308 * 17 16 15 23 23 N 1.31712 * 119.92987 * 359.97438 * 14 13 9 24 24 H 0.97004 * 119.99876 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47642 * 305.71747 * 11 9 7 26 26 H 1.08996 * 109.47167 * 65.72113 * 11 9 7 27 27 H 1.08005 * 120.29203 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.38569 * 179.97438 * 16 15 14 29 29 H 1.07999 * 125.51698 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9829 -1.3944 5 1 1.3960 2.6819 0.5873 6 1 3.4874 1.4744 0.8070 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0778 9 6 3.5076 -1.1963 0.1106 10 1 3.9001 -0.2483 -0.2570 11 6 3.9114 -1.3824 1.5745 12 17 5.7001 -1.2174 1.7300 13 8 4.0407 -2.2676 -0.6705 14 6 5.2738 -2.0868 -1.2021 15 6 5.8587 -3.1035 -1.9836 16 6 7.0900 -2.9123 -2.5086 17 7 7.7419 -1.7346 -2.2701 18 7 8.9945 -1.2514 -2.6651 19 6 9.1602 -0.0460 -2.1693 20 6 8.0321 0.3003 -1.4391 21 35 7.7541 1.9289 -0.5191 22 6 7.1470 -0.7679 -1.5008 23 7 5.9230 -0.9609 -0.9883 24 1 -0.4850 0.8401 -0.0004 25 1 3.4222 -0.6240 2.1856 26 1 3.6072 -2.3730 1.9123 27 1 5.3284 -4.0275 -2.1608 28 1 7.5530 -3.6810 -3.1094 29 1 10.0327 0.5751 -2.3083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226352922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:11 Heat of formation + Delta-G solvation = 77.097585 kcal Electronic energy + Delta-G solvation = -19921.989763 eV Core-core repulsion = 16534.313915 eV Total energy + Delta-G solvation = -3387.675848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.962 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17127 -39.26715 -36.82940 -35.06303 -33.83797 -33.28974 -31.21775 -30.92006 -29.91932 -27.87546 -25.43464 -24.59527 -23.09303 -21.24750 -21.20070 -18.30529 -18.01771 -17.07246 -16.69264 -16.19166 -15.19349 -14.77746 -14.37930 -14.12328 -13.95408 -13.36850 -13.22652 -13.15563 -12.81839 -12.40733 -11.89501 -11.66116 -11.39186 -11.27482 -11.06912 -10.78464 -10.24324 -10.08052 -10.03678 -9.78225 -9.70790 -9.45963 -9.30321 -8.97909 -8.74842 -7.58270 -6.52131 -4.62432 0.73912 1.03628 1.75156 2.49167 2.51878 3.01206 3.16030 3.20544 3.29687 3.31165 3.59686 4.02269 4.09112 4.19182 4.67640 4.86760 4.99932 5.18847 5.36705 5.50744 5.66597 5.80816 5.90784 6.11708 6.22411 6.46736 6.61126 7.04946 7.35191 7.55705 7.88944 8.11743 8.56701 9.03941 10.57107 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.006149 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.304287 B = 4552.665789 C = 5621.676721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.092 3.908 3 Si 0.859 3.141 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.177 3.823 10 H 0.073 0.927 11 C -0.037 4.037 12 Cl -0.215 7.215 13 O -0.277 6.277 14 C 0.406 3.594 15 C -0.211 4.211 16 C 0.176 3.824 17 N -0.328 5.328 18 N -0.323 5.323 19 C 0.128 3.872 20 C -0.271 4.271 21 Br -0.013 7.013 22 C 0.350 3.650 23 N -0.509 5.509 24 H 0.275 0.725 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.175 0.825 28 H 0.185 0.815 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 -1.437 -2.980 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.116 4.116 3 Si 0.683 3.317 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.566 4.566 8 H 0.108 0.892 9 C 0.122 3.878 10 H 0.091 0.909 11 C -0.100 4.100 12 Cl -0.189 7.189 13 O -0.177 6.177 14 C 0.205 3.795 15 C -0.237 4.237 16 C 0.043 3.957 17 N -0.102 5.102 18 N -0.146 5.146 19 C -0.054 4.054 20 C -0.364 4.364 21 Br 0.070 6.930 22 C 0.117 3.883 23 N -0.242 5.242 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.192 0.808 28 H 0.202 0.798 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 15.027 -1.118 -2.864 15.339 hybrid contribution 0.347 0.668 -0.013 0.753 sum 15.374 -0.450 -2.877 15.647 Atomic orbital electron populations 1.69828 1.06272 1.28277 1.45709 1.24920 0.94875 0.99018 0.92772 0.87069 0.80954 0.83106 0.80540 1.18998 1.20418 1.17234 1.20653 0.86209 0.96041 1.53725 0.89173 1.20992 0.94624 0.87063 0.85111 0.90919 1.25727 0.78020 1.04611 1.01637 1.98688 1.22952 1.98733 1.98479 1.86532 1.23572 1.45755 1.61837 1.20492 0.86256 0.87427 0.85302 1.21032 0.95551 1.02889 1.04184 1.21726 0.91022 0.86465 0.96455 1.46978 1.14597 1.12831 1.35759 1.77818 0.95583 1.13287 1.27916 1.23624 0.97170 0.92517 0.92054 1.20687 0.99208 0.96896 1.19654 1.96550 1.97302 1.23490 1.75654 1.19807 0.89440 0.89110 0.89927 1.68254 1.06016 1.22859 1.27083 0.91450 0.88253 0.89271 0.80772 0.79767 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 13.96 55.43 0.77 -23.29 15 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.86 20.09 26.99 -169.99 -4.59 15.50 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 6 H -0.25 -5.69 6.82 56.52 0.39 -5.31 15 7 C -0.53 -13.62 9.23 -34.43 -0.32 -13.94 15 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 15 9 C 0.18 3.96 1.91 -27.88 -0.05 3.90 15 10 H 0.07 1.73 4.15 -51.93 -0.22 1.51 15 11 C -0.04 -0.74 6.31 37.16 0.23 -0.50 15 12 Cl -0.21 -4.15 25.95 -51.86 -1.35 -5.49 15 13 O -0.28 -5.67 9.74 -18.17 -0.18 -5.84 15 14 C 0.41 7.31 6.72 -16.58 -0.11 7.20 15 15 C -0.21 -2.75 10.00 -39.64 -0.40 -3.15 15 16 C 0.18 2.08 11.29 -16.46 -0.19 1.90 15 17 N -0.33 -5.03 3.90 -12.21 -0.05 -5.08 15 18 N -0.32 -4.76 12.66 30.49 0.39 -4.37 15 19 C 0.13 1.76 11.92 -17.55 -0.21 1.55 15 20 C -0.27 -4.47 6.62 -39.15 -0.26 -4.73 15 21 Br -0.01 -0.20 34.10 -68.01 -2.32 -2.52 15 22 C 0.35 6.24 7.90 -155.46 -1.23 5.01 15 23 N -0.51 -9.86 6.51 -12.27 -0.08 -9.94 15 24 H 0.28 7.13 8.31 -40.82 -0.34 6.79 15 25 H 0.10 1.99 8.14 -51.93 -0.42 1.56 15 26 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 27 H 0.17 1.66 8.06 -52.48 -0.42 1.24 15 28 H 0.19 1.33 8.06 -52.49 -0.42 0.91 15 29 H 0.20 1.90 8.06 -52.49 -0.42 1.47 15 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -29.91 293.19 -7.51 -37.41 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -1.90 Total: -0.36 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.62 Total: -0.43 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 1.03 Total: -42.68 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.18 Total: -5.84 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.59 Total: 15.50 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -1.35 Total: -5.49 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.32 Total: -2.52 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.91 -7.51 -37.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226352922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.511 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds