Wall clock time and date at job start Wed Apr 1 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48505 * 109.46528 * 264.80409 * 3 2 1 5 5 H 1.48499 * 109.46953 * 24.80076 * 3 2 1 6 6 H 1.48498 * 109.47389 * 144.80123 * 3 2 1 7 7 C 1.37879 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00021 * 4.83283 * 7 2 1 9 9 C 1.50710 * 120.00266 * 184.83591 * 7 2 1 10 10 H 1.08996 * 109.46418 * 334.98892 * 9 7 2 11 11 C 1.52998 * 109.46946 * 94.98756 * 9 7 2 12 12 Cl 1.80300 * 109.46748 * 185.72133 * 11 9 7 13 13 O 1.42891 * 109.47179 * 214.99004 * 9 7 2 14 14 C 1.35493 * 117.00043 * 149.99721 * 13 9 7 15 15 C 1.40942 * 119.93227 * 180.02562 * 14 13 9 16 16 C 1.35213 * 119.41866 * 180.02562 * 15 14 13 17 17 N 1.36702 * 119.22959 * 359.97438 * 16 15 14 18 18 N 1.39956 * 132.45727 * 179.97438 * 17 16 15 19 19 C 1.31384 * 108.85312 * 180.02562 * 18 17 16 20 20 C 1.38771 * 108.96667 * 359.97438 * 19 18 17 21 21 Br 1.89101 * 126.18800 * 180.02562 * 20 19 18 22 22 C 1.37121 * 119.88981 * 0.29308 * 17 16 15 23 23 N 1.31712 * 119.92987 * 359.97438 * 14 13 9 24 24 H 0.97004 * 119.99876 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47642 * 305.71747 * 11 9 7 26 26 H 1.08996 * 109.47167 * 65.72113 * 11 9 7 27 27 H 1.08005 * 120.29203 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.38569 * 179.97438 * 16 15 14 29 29 H 1.07999 * 125.51698 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9829 -1.3944 5 1 1.3960 2.6819 0.5873 6 1 3.4874 1.4744 0.8070 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0778 9 6 3.5076 -1.1963 0.1106 10 1 3.9001 -0.2483 -0.2570 11 6 3.9114 -1.3824 1.5745 12 17 5.7001 -1.2174 1.7300 13 8 4.0407 -2.2676 -0.6705 14 6 5.2738 -2.0868 -1.2021 15 6 5.8587 -3.1035 -1.9836 16 6 7.0900 -2.9123 -2.5086 17 7 7.7419 -1.7346 -2.2701 18 7 8.9945 -1.2514 -2.6651 19 6 9.1602 -0.0460 -2.1693 20 6 8.0321 0.3003 -1.4391 21 35 7.7541 1.9289 -0.5191 22 6 7.1470 -0.7679 -1.5008 23 7 5.9230 -0.9609 -0.9883 24 1 -0.4850 0.8401 -0.0004 25 1 3.4222 -0.6240 2.1856 26 1 3.6072 -2.3730 1.9123 27 1 5.3284 -4.0275 -2.1608 28 1 7.5530 -3.6810 -3.1094 29 1 10.0327 0.5751 -2.3083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226352922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:10 Heat of formation + Delta-G solvation = 58.609637 kcal Electronic energy + Delta-G solvation = -19922.791461 eV Core-core repulsion = 16534.313915 eV Total energy + Delta-G solvation = -3388.477546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.962 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.33493 -40.68217 -38.12968 -36.63882 -35.29063 -34.94731 -32.68919 -32.22132 -31.27578 -29.07591 -27.28666 -25.83320 -24.28765 -22.84353 -22.36785 -19.80605 -19.47865 -18.68539 -17.90163 -17.46729 -16.83615 -16.20612 -15.60686 -15.55468 -15.04098 -14.90183 -14.75440 -14.62380 -14.28479 -13.90157 -13.47917 -13.14207 -12.94609 -12.86004 -12.45561 -12.35902 -11.96263 -11.61966 -11.42628 -11.28724 -11.12751 -11.05426 -10.92789 -10.62751 -10.05956 -8.81575 -8.55016 -6.67982 -0.36490 -0.15136 0.60953 1.22475 1.30870 1.36107 1.40958 1.42837 1.46535 1.93061 2.14901 2.36007 2.75357 2.91106 3.14803 3.60087 3.96992 4.12618 4.15651 4.21954 4.27276 4.43434 4.51880 4.72852 4.89240 5.09605 5.17693 5.41699 5.78794 6.22155 6.37433 6.47458 6.63330 7.01883 8.58681 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.006149 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.304287 B = 4552.665789 C = 5621.676721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.053 3.947 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.188 3.812 10 H 0.060 0.940 11 C -0.034 4.034 12 Cl -0.201 7.201 13 O -0.291 6.291 14 C 0.384 3.616 15 C -0.212 4.212 16 C 0.192 3.808 17 N -0.333 5.333 18 N -0.322 5.322 19 C 0.139 3.861 20 C -0.289 4.289 21 Br -0.018 7.018 22 C 0.324 3.676 23 N -0.541 5.541 24 H 0.279 0.721 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.210 0.790 28 H 0.238 0.762 29 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.690 -2.000 -3.793 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.166 1.166 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.132 3.868 10 H 0.078 0.922 11 C -0.097 4.097 12 Cl -0.175 7.175 13 O -0.192 6.192 14 C 0.184 3.816 15 C -0.236 4.236 16 C 0.060 3.940 17 N -0.106 5.106 18 N -0.145 5.145 19 C -0.043 4.043 20 C -0.382 4.382 21 Br 0.065 6.935 22 C 0.091 3.909 23 N -0.275 5.275 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.227 0.773 28 H 0.254 0.746 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 17.633 -1.693 -3.683 18.093 hybrid contribution -0.293 0.753 0.164 0.824 sum 17.341 -0.941 -3.518 17.719 Atomic orbital electron populations 1.69916 1.07605 1.29170 1.47898 1.25498 0.95326 1.01647 0.92630 0.86276 0.80170 0.80131 0.80174 1.19590 1.19483 1.16586 1.20764 0.88292 0.94758 1.53227 0.92320 1.20605 0.92549 0.87219 0.86429 0.92217 1.25445 0.78825 1.05289 1.00120 1.98685 1.21640 1.98741 1.98401 1.86423 1.25558 1.44666 1.62560 1.20957 0.85434 0.88863 0.86343 1.21344 0.96045 1.02906 1.03307 1.22615 0.90176 0.86032 0.95132 1.47260 1.14666 1.13399 1.35294 1.77807 0.95224 1.13648 1.27808 1.24202 0.97372 0.92297 0.90429 1.21008 1.00100 0.96746 1.20339 1.96530 1.97417 1.23720 1.75876 1.19936 0.89424 0.90422 0.91145 1.68076 1.07096 1.23982 1.28310 0.91149 0.88375 0.88120 0.77337 0.74566 0.74936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.82 13.96 21.45 0.30 -51.52 15 2 C 0.05 2.83 5.47 84.66 0.46 3.30 15 3 Si 0.91 41.93 26.99 68.60 1.85 43.78 15 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 6 H -0.24 -10.82 6.82 99.48 0.68 -10.14 15 7 C -0.53 -28.14 9.23 25.60 0.24 -27.90 15 8 H 0.06 3.40 8.06 -2.91 -0.02 3.37 15 9 C 0.19 8.43 1.91 29.85 0.06 8.49 15 10 H 0.06 2.85 4.15 -2.39 -0.01 2.84 15 11 C -0.03 -1.34 6.31 71.98 0.45 -0.88 15 12 Cl -0.20 -7.56 25.95 -2.72 -0.07 -7.63 15 13 O -0.29 -11.85 9.74 -87.94 -0.86 -12.71 15 14 C 0.38 13.37 6.72 85.37 0.57 13.94 15 15 C -0.21 -4.91 10.00 22.23 0.22 -4.68 15 16 C 0.19 3.80 11.29 83.24 0.94 4.74 15 17 N -0.33 -9.22 3.90 -192.55 -0.75 -9.97 15 18 N -0.32 -8.41 12.66 -57.45 -0.73 -9.14 15 19 C 0.14 3.40 11.92 84.89 1.01 4.41 15 20 C -0.29 -8.98 6.62 22.55 0.15 -8.83 15 21 Br -0.02 -0.56 34.10 -20.37 -0.69 -1.26 15 22 C 0.32 10.98 7.90 133.12 1.05 12.03 15 23 N -0.54 -20.42 6.51 -305.97 -1.99 -22.41 15 24 H 0.28 14.78 8.31 -92.71 -0.77 14.00 15 25 H 0.10 3.90 8.14 -2.39 -0.02 3.88 15 26 H 0.10 3.74 8.14 -2.39 -0.02 3.72 15 27 H 0.21 3.21 8.06 -2.91 -0.02 3.19 15 28 H 0.24 2.04 8.06 -2.91 -0.02 2.02 15 29 H 0.23 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -66.29 293.19 3.40 -62.89 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.18 Total: 3.34 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.16 Total: 4.61 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -3.17 Total: -93.03 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.86 Total: -12.71 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.85 Total: 43.78 kcal Atomic # 17 Polarization: -7.56 SS G_CDS: -0.07 Total: -7.63 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.69 Total: -1.26 kcal Total: -66.29 3.40 -62.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226352922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.500 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds