Wall clock time and date at job start Wed Apr 1 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.46895 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46962 * 119.99813 * 3 2 1 6 6 H 1.48494 * 109.47008 * 240.00189 * 3 2 1 7 7 C 1.37877 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00030 * 186.03407 * 7 2 1 9 9 C 1.50700 * 119.99885 * 6.03183 * 7 2 1 10 10 H 1.09003 * 109.46801 * 35.31324 * 9 7 2 11 11 C 1.53004 * 109.47123 * 155.31044 * 9 7 2 12 12 Cl 1.80301 * 109.47265 * 185.71743 * 11 9 7 13 13 O 1.42900 * 109.47454 * 275.31110 * 9 7 2 14 14 C 1.35734 * 116.99975 * 150.00131 * 13 9 7 15 15 N 1.31195 * 126.30410 * 0.02562 * 14 13 9 16 16 N 1.28667 * 110.30209 * 179.97438 * 15 14 13 17 17 C 1.32069 * 109.61689 * 359.97438 * 16 15 14 18 18 C 1.40926 * 133.50849 * 180.02562 * 17 16 15 19 19 C 1.35931 * 119.25777 * 179.97438 * 18 17 16 20 20 C 1.40750 * 119.83438 * 0.02562 * 19 18 17 21 21 Br 1.89099 * 119.79646 * 180.02562 * 20 19 18 22 22 C 1.34911 * 120.41026 * 359.97438 * 20 19 18 23 23 N 1.36175 * 126.30594 * 179.71492 * 14 13 9 24 24 H 0.96996 * 120.00216 * 175.12859 * 1 2 3 25 25 H 1.08998 * 109.47313 * 305.72058 * 11 9 7 26 26 H 1.09007 * 109.46860 * 65.71860 * 11 9 7 27 27 H 1.08001 * 120.37281 * 0.02562 * 18 17 16 28 28 H 1.07997 * 120.07736 * 180.02562 * 19 18 17 29 29 H 1.08005 * 119.77179 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1966 0.0989 9 6 1.2573 -2.4956 -0.1360 10 1 0.4069 -2.3579 -0.8040 11 6 2.1911 -3.5618 -0.7123 12 17 1.2563 -5.0699 -1.0328 13 8 0.7913 -2.9144 1.1483 14 6 -0.3547 -3.6411 1.1811 15 7 -1.0780 -3.9981 0.1465 16 7 -2.0993 -4.6805 0.5298 17 6 -2.0848 -4.7994 1.8450 18 6 -2.9391 -5.4298 2.7717 19 6 -2.6413 -5.3710 4.0966 20 6 -1.4898 -4.6846 4.5257 21 35 -1.0761 -4.6041 6.3691 22 6 -0.6789 -4.0846 3.6299 23 7 -0.9621 -4.1390 2.2936 24 1 -0.4850 -0.8370 -0.0713 25 1 2.6259 -3.1990 -1.6437 26 1 2.9868 -3.7725 0.0023 27 1 -3.8202 -5.9545 2.4328 28 1 -3.2866 -5.8498 4.8182 29 1 0.2022 -3.5611 3.9705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227154960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:00 Heat of formation + Delta-G solvation = 48.879295 kcal Electronic energy + Delta-G solvation = -19789.218130 eV Core-core repulsion = 16400.318645 eV Total energy + Delta-G solvation = -3388.899485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.962 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.53698 -39.94218 -39.10060 -36.80908 -35.61132 -34.83412 -33.43538 -31.90344 -30.73609 -29.73401 -26.88018 -25.32075 -24.41351 -24.31918 -22.57647 -19.96077 -19.63244 -18.50229 -18.09330 -17.81924 -16.56979 -16.35184 -16.07928 -15.81216 -15.58901 -15.07980 -14.22300 -14.12845 -13.90984 -13.64444 -13.43239 -13.33788 -12.75194 -12.72189 -12.58253 -12.25121 -11.95450 -11.82757 -11.69583 -11.48296 -11.38604 -11.18627 -10.88470 -10.84679 -10.19683 -8.99503 -8.84224 -6.84953 -0.55396 -0.02129 0.04639 0.81988 1.32454 1.54347 1.60017 1.62885 1.79788 2.14774 2.39051 2.50555 2.98984 3.12250 3.40739 3.52138 3.72945 3.89513 4.00925 4.06260 4.12905 4.46684 4.72554 4.73551 4.79669 4.88787 5.20728 5.42812 5.50830 5.83765 6.14640 6.41896 7.06399 7.43692 8.37706 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004289 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.365615 B = 6526.025495 C = 7829.400720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.010 4.010 3 Si 1.124 2.876 4 H -0.285 1.285 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.603 4.603 8 H 0.082 0.918 9 C 0.193 3.807 10 H 0.034 0.966 11 C -0.027 4.027 12 Cl -0.202 7.202 13 O -0.313 6.313 14 C 0.350 3.650 15 N -0.304 5.304 16 N -0.304 5.304 17 C 0.172 3.828 18 C -0.064 4.064 19 C -0.062 4.062 20 C -0.112 4.112 21 Br 0.011 6.989 22 C 0.096 3.904 23 N -0.405 5.405 24 H 0.260 0.740 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.198 0.802 28 H 0.198 0.802 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -9.893 14.154 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.214 4.214 3 Si 0.942 3.058 4 H -0.210 1.210 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.639 4.639 8 H 0.100 0.900 9 C 0.141 3.859 10 H 0.051 0.949 11 C -0.090 4.090 12 Cl -0.176 7.176 13 O -0.217 6.217 14 C 0.050 3.950 15 N -0.158 5.158 16 N -0.148 5.148 17 C -0.079 4.079 18 C -0.086 4.086 19 C -0.088 4.088 20 C -0.196 4.196 21 Br 0.095 6.905 22 C -0.028 4.028 23 N -0.097 5.097 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.215 0.785 28 H 0.215 0.785 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.415 -8.324 13.365 15.929 hybrid contribution 0.529 -1.525 0.389 1.660 sum -1.885 -9.849 13.753 17.021 Atomic orbital electron populations 1.70884 1.08406 1.31128 1.42447 1.27843 0.96090 1.07340 0.90157 0.82877 0.74172 0.69821 0.78889 1.21024 1.18840 1.17984 1.22306 0.95874 0.89787 1.55896 0.89983 1.20770 0.93476 0.91964 0.79738 0.94852 1.25037 0.95897 0.83966 1.04083 1.98698 1.78305 1.43789 1.96778 1.86670 1.31535 1.63648 1.39853 1.22877 0.92736 0.97177 0.82201 1.74687 1.03254 1.16018 1.21828 1.74567 1.15435 1.17678 1.07095 1.22801 0.90100 1.01653 0.93362 1.20671 0.99115 0.99022 0.89749 1.21432 0.94694 0.96707 0.95922 1.21454 0.99776 1.05724 0.92656 1.96796 1.94196 1.97983 1.01525 1.21878 1.01409 1.00006 0.79534 1.43398 1.20957 1.38979 1.06411 0.92969 0.86514 0.88318 0.78538 0.78525 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.71 13.63 21.45 0.29 -52.42 15 2 C -0.01 -0.53 5.45 84.65 0.46 -0.07 15 3 Si 1.12 45.05 29.91 68.60 2.05 47.11 15 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 15 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 6 H -0.26 -9.21 7.11 99.48 0.71 -8.51 15 7 C -0.60 -31.07 8.69 25.60 0.22 -30.85 15 8 H 0.08 3.93 7.81 -2.91 -0.02 3.91 15 9 C 0.19 9.65 1.83 29.85 0.05 9.71 15 10 H 0.03 1.89 6.14 -2.39 -0.01 1.88 15 11 C -0.03 -1.11 6.31 71.98 0.45 -0.66 15 12 Cl -0.20 -8.39 26.18 -2.72 -0.07 -8.46 15 13 O -0.31 -15.73 9.83 -90.58 -0.89 -16.62 15 14 C 0.35 16.55 7.87 179.70 1.41 17.96 15 15 N -0.30 -14.90 9.21 -173.35 -1.60 -16.50 15 16 N -0.30 -13.40 12.29 -55.19 -0.68 -14.08 15 17 C 0.17 6.25 7.93 134.02 1.06 7.32 15 18 C -0.06 -1.49 10.11 22.39 0.23 -1.27 15 19 C -0.06 -1.15 9.81 22.35 0.22 -0.93 15 20 C -0.11 -2.56 6.19 22.12 0.14 -2.43 15 21 Br 0.01 0.19 33.68 -20.37 -0.69 -0.50 15 22 C 0.10 2.95 10.70 83.17 0.89 3.84 15 23 N -0.41 -15.88 2.97 -467.31 -1.39 -17.27 15 24 H 0.26 16.12 6.80 -92.71 -0.63 15.49 15 25 H 0.12 4.38 8.14 -2.39 -0.02 4.36 15 26 H 0.10 3.74 8.14 -2.38 -0.02 3.72 15 27 H 0.20 3.10 8.06 -2.91 -0.02 3.08 15 28 H 0.20 1.83 8.06 -2.91 -0.02 1.81 15 29 H 0.17 5.13 8.06 -2.91 -0.02 5.10 15 Total: -1.00 -68.82 295.10 3.52 -65.30 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.34 Total: 10.82 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.14 Total: 2.63 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.37 Total: -100.27 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.89 Total: -16.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.05 Total: 47.11 kcal Atomic # 17 Polarization: -8.39 SS G_CDS: -0.07 Total: -8.46 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -0.69 Total: -0.50 kcal Total: -68.82 3.52 -65.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227154960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.184 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds