Wall clock time and date at job start Wed Apr 1 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99929 * 2 1 4 4 C 1.53049 * 109.37889 * 176.82469 * 3 2 1 5 5 N 1.46955 * 109.36962 * 58.38792 * 4 3 2 6 6 C 1.38997 * 111.00121 * 176.81089 * 5 4 3 7 7 C 1.39141 * 119.70434 * 179.72757 * 6 5 4 8 8 C 1.38303 * 119.09271 * 179.70867 * 7 6 5 9 9 C 1.38877 * 118.50965 * 0.55231 * 8 7 6 10 10 C 1.50701 * 120.34001 * 179.70339 * 9 8 7 11 11 N 1.46901 * 109.47307 * 270.02660 * 10 9 8 12 12 C 1.46849 * 110.99628 * 66.04516 * 11 10 9 13 13 C 1.53042 * 109.52028 * 185.83820 * 12 11 10 14 14 C 1.53117 * 109.27698 * 300.82236 * 13 12 11 15 15 C 1.53119 * 109.16507 * 57.65404 * 14 13 12 16 16 H 1.08993 * 109.50224 * 62.28467 * 15 14 13 17 17 C 1.50696 * 109.50205 * 182.36812 * 15 14 13 18 18 H 1.08005 * 120.00135 * 120.00039 * 17 15 14 19 19 C 1.37877 * 119.99844 * 299.99121 * 17 15 14 20 20 N 1.31510 * 120.00361 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99656 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47050 * 120.00733 * 21 19 17 24 24 H 1.48507 * 109.46918 * 240.00048 * 21 19 17 25 25 C 1.46842 * 110.99831 * 190.24992 * 11 10 9 26 26 C 1.38026 * 119.32671 * 359.73113 * 9 8 7 27 27 N 1.31973 * 120.85744 * 359.97438 * 26 9 8 28 28 C 1.46955 * 110.87760 * 300.68251 * 5 4 3 29 29 C 1.46957 * 111.01647 * 236.18705 * 2 1 3 30 30 H 1.08996 * 109.47312 * 59.99851 * 1 2 3 31 31 H 1.09000 * 109.47473 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47251 * 300.00289 * 1 2 3 33 33 H 1.09002 * 109.49189 * 56.84312 * 3 2 1 34 34 H 1.09002 * 109.48707 * 296.80070 * 3 2 1 35 35 H 1.09005 * 109.48797 * 178.36083 * 4 3 2 36 36 H 1.08999 * 109.49048 * 298.39592 * 4 3 2 37 37 H 1.07997 * 120.45146 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.74181 * 180.25854 * 8 7 6 39 39 H 1.09000 * 109.46677 * 30.02626 * 10 9 8 40 40 H 1.08995 * 109.46981 * 150.02462 * 10 9 8 41 41 H 1.08997 * 109.46247 * 305.84685 * 12 11 10 42 42 H 1.08994 * 109.46558 * 65.82452 * 12 11 10 43 43 H 1.09001 * 109.50115 * 60.75806 * 13 12 11 44 44 H 1.08997 * 109.50386 * 180.87670 * 13 12 11 45 45 H 1.08999 * 109.52058 * 177.56001 * 14 13 12 46 46 H 1.09001 * 109.52344 * 297.68180 * 14 13 12 47 47 H 0.96996 * 120.00559 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.46585 * 294.18192 * 25 11 10 49 49 H 1.09000 * 109.46159 * 54.14677 * 25 11 10 50 50 H 1.08003 * 119.57271 * 179.97438 * 26 9 8 51 51 H 1.09002 * 109.48806 * 179.28632 * 28 5 4 52 52 H 1.09003 * 109.48675 * 299.34665 * 28 5 4 53 53 H 1.08997 * 109.47347 * 63.19745 * 29 2 1 54 54 H 1.09002 * 109.50396 * 303.15878 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3295 0.0800 5 7 4.0501 0.5662 -1.0601 6 6 5.4401 0.5667 -1.0603 7 6 6.1296 -0.1104 -2.0614 8 6 7.5126 -0.0966 -2.0529 9 6 8.1624 0.5865 -1.0332 10 6 9.6680 0.6226 -0.9801 11 7 10.1577 -0.5167 -0.1927 12 6 9.8622 -1.7877 -0.8663 13 6 10.2537 -2.9528 0.0455 14 6 11.7472 -2.8609 0.3703 15 6 12.0365 -1.5083 1.0270 16 1 11.4876 -1.4348 1.9658 17 6 13.5140 -1.3859 1.2970 18 1 14.0809 -0.5849 0.8459 19 6 14.1420 -2.2963 2.1203 20 7 13.4519 -3.2718 2.6694 21 14 15.9734 -2.1441 2.4555 22 1 16.5146 -0.9702 1.7248 23 1 16.1967 -1.9656 3.9128 24 1 16.6647 -3.3755 1.9961 25 6 11.5933 -0.3851 0.0867 26 6 7.4152 1.2317 -0.0685 27 7 6.0962 1.2068 -0.1050 28 6 3.5238 -0.8058 -1.0597 29 6 1.9961 -0.7634 -1.1398 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6013 1.9129 0.8602 34 1 1.6934 1.8775 -0.9172 35 1 3.9175 2.3454 0.0507 36 1 3.8257 0.8489 1.0105 37 1 5.5922 -0.6358 -2.8369 38 1 8.0745 -0.6097 -2.8193 39 1 10.0687 0.5639 -1.9921 40 1 9.9929 1.5528 -0.5141 41 1 8.7964 -1.8422 -1.0877 42 1 10.4295 -1.8470 -1.7951 43 1 9.6767 -2.9020 0.9689 44 1 10.0487 -3.8960 -0.4609 45 1 12.0213 -3.6640 1.0543 46 1 12.3261 -2.9519 -0.5488 47 1 13.8937 -3.9125 3.2483 48 1 12.1525 -0.4509 -0.8466 49 1 11.7848 0.5792 0.5573 50 1 7.9164 1.7638 0.7265 51 1 3.9182 -1.3468 -1.9200 52 1 3.8261 -1.3110 -0.1423 53 1 1.6938 -0.2825 -2.0701 54 1 1.6020 -1.7793 -1.1108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232366409.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:29 Heat of formation + Delta-G solvation = 39.396771 kcal Electronic energy + Delta-G solvation = -30339.993926 eV Core-core repulsion = 26503.718754 eV Total energy + Delta-G solvation = -3836.275173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.227 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80134 -40.19048 -39.38674 -36.76232 -35.59105 -33.98703 -33.26608 -32.01139 -31.72490 -31.42033 -29.13412 -26.92707 -26.66871 -25.46783 -24.85193 -23.75792 -23.58738 -23.05300 -22.05514 -20.88626 -20.33629 -18.64455 -18.41317 -17.63018 -16.92452 -16.52751 -16.36845 -16.26248 -16.07272 -15.88481 -15.68388 -15.50054 -15.25905 -14.98306 -14.88659 -14.67758 -14.39644 -14.23541 -14.00278 -13.79756 -13.49528 -13.41684 -13.10322 -12.96071 -12.85927 -12.71231 -12.69611 -12.52829 -12.34460 -12.19976 -11.97681 -11.95775 -11.84360 -11.70907 -11.39945 -10.92525 -10.83473 -10.70342 -10.63183 -10.41342 -10.34482 -9.35833 -9.16326 -8.97240 -8.07021 -6.21172 0.16779 0.36899 1.40543 1.42471 1.53611 2.39489 2.44460 2.82720 2.93916 3.20007 3.30266 3.48546 3.80092 3.86518 3.95960 4.03070 4.04510 4.15615 4.19392 4.22815 4.26309 4.28302 4.36109 4.43718 4.52432 4.53684 4.62124 4.63463 4.64066 4.70810 4.78163 4.79386 4.85875 4.89100 4.90750 4.90949 4.98469 5.01105 5.03835 5.07233 5.11618 5.19529 5.31647 5.40354 5.51909 5.54856 5.64895 5.67689 5.97395 6.01147 6.02270 6.13840 6.18315 6.22892 6.35535 6.47256 6.92440 7.04712 7.46854 8.97683 Molecular weight = 344.23amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.001966 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.967636 B =14239.703099 C =14465.020171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.564 5.564 3 C 0.061 3.939 4 C 0.075 3.925 5 N -0.479 5.479 6 C 0.291 3.709 7 C -0.182 4.182 8 C -0.048 4.048 9 C -0.149 4.149 10 C 0.103 3.897 11 N -0.545 5.545 12 C 0.068 3.932 13 C -0.110 4.110 14 C -0.103 4.103 15 C 0.052 3.948 16 H -0.007 1.007 17 C -0.533 4.533 18 H 0.054 0.946 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.083 3.917 26 C 0.131 3.869 27 N -0.539 5.539 28 C 0.061 3.939 29 C 0.061 3.939 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.032 0.968 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.259 0.741 48 H 0.020 0.980 49 H 0.060 0.940 50 H 0.157 0.843 51 H 0.105 0.895 52 H 0.036 0.964 53 H 0.049 0.951 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.639 6.615 -12.119 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.289 5.289 3 C -0.068 4.068 4 C -0.053 4.053 5 N -0.197 5.197 6 C 0.059 3.941 7 C -0.204 4.204 8 C -0.074 4.074 9 C -0.153 4.153 10 C -0.025 4.025 11 N -0.270 5.270 12 C -0.060 4.060 13 C -0.148 4.148 14 C -0.141 4.141 15 C 0.033 3.967 16 H 0.011 0.989 17 C -0.571 4.571 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.556 5.556 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.044 4.044 26 C -0.026 4.026 27 N -0.253 5.253 28 C -0.065 4.065 29 C -0.067 4.067 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.038 0.962 49 H 0.079 0.921 50 H 0.174 0.826 51 H 0.123 0.877 52 H 0.055 0.945 53 H 0.067 0.933 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.420 6.900 -10.908 28.510 hybrid contribution 2.163 -0.404 -0.710 2.312 sum -23.257 6.497 -11.619 26.798 Atomic orbital electron populations 1.22378 0.85460 1.02960 1.01254 1.62164 1.09443 1.13964 1.43345 1.22201 0.93125 0.89651 1.01774 1.21938 0.94238 0.98541 0.90552 1.59461 1.02575 1.15351 1.42356 1.20083 0.89948 0.93170 0.90875 1.21699 0.94450 1.03684 1.00609 1.21604 0.94037 0.94735 0.97041 1.20628 0.96399 1.00998 0.97236 1.20899 0.90031 0.94649 0.96894 1.61935 1.16362 1.02156 1.46556 1.22035 1.00358 0.88933 0.94635 1.21574 0.96829 0.97488 0.98931 1.21450 0.93543 1.00898 0.98219 1.18590 0.93759 0.91466 0.92883 0.98860 1.21563 0.95040 1.12048 1.28481 0.92803 1.25740 1.02251 0.95092 0.95616 1.70047 1.37056 1.16088 1.32435 0.85563 0.80563 0.78083 0.77771 1.18998 1.20836 1.20688 1.21979 0.85575 0.99389 0.97505 1.22509 0.88098 0.95410 0.96557 1.67596 1.10771 1.22647 1.24276 1.22420 0.95707 0.86182 1.02237 1.22200 0.92633 0.99843 0.92070 0.95022 0.90366 0.90777 0.88894 0.93819 0.90131 0.94455 0.82522 0.83022 0.93106 0.89505 0.90032 0.94985 0.93891 0.91380 0.92601 0.95633 0.93155 0.96155 0.92134 0.82564 0.87714 0.94509 0.93327 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 127.69 1.23 1.51 16 2 N -0.56 -8.70 4.97 -921.94 -4.58 -13.27 16 3 C 0.06 0.97 5.62 86.31 0.49 1.46 16 4 C 0.07 1.57 4.79 86.31 0.41 1.98 16 5 N -0.48 -10.01 4.73 -701.39 -3.32 -13.33 16 6 C 0.29 7.06 6.41 133.07 0.85 7.91 16 7 C -0.18 -3.73 9.21 22.50 0.21 -3.52 16 8 C -0.05 -1.02 8.04 22.44 0.18 -0.84 16 9 C -0.15 -3.76 4.90 -19.76 -0.10 -3.85 16 10 C 0.10 2.78 5.14 85.56 0.44 3.22 16 11 N -0.55 -19.03 4.65 -900.94 -4.19 -23.21 16 12 C 0.07 2.23 5.18 86.33 0.45 2.67 16 13 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 14 C -0.10 -4.95 5.02 30.67 0.15 -4.80 16 15 C 0.05 2.65 2.26 -11.49 -0.03 2.62 16 16 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 17 C -0.53 -29.55 8.57 25.60 0.22 -29.34 16 18 H 0.05 2.91 7.75 -2.91 -0.02 2.89 16 19 C 0.01 0.64 5.30 84.66 0.45 1.09 16 20 N -0.92 -53.83 11.35 21.45 0.24 -53.59 16 21 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 C 0.08 3.42 4.68 86.33 0.40 3.83 16 26 C 0.13 3.56 10.85 84.62 0.92 4.48 16 27 N -0.54 -14.96 8.71 -193.26 -1.68 -16.64 16 28 C 0.06 1.03 5.36 86.31 0.46 1.49 16 29 C 0.06 0.82 5.62 86.31 0.49 1.31 16 30 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 1.80 7.82 -2.38 -0.02 1.79 16 36 H 0.04 0.94 8.05 -2.39 -0.02 0.92 16 37 H 0.16 2.33 7.16 -2.91 -0.02 2.31 16 38 H 0.15 2.60 7.98 -2.91 -0.02 2.57 16 39 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 40 H 0.09 2.24 7.93 -2.39 -0.02 2.23 16 41 H 0.08 2.33 5.77 -2.39 -0.01 2.31 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 3.07 6.15 -2.39 -0.01 3.05 16 46 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 2.46 8.01 -2.39 -0.02 2.44 16 50 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 51 H 0.10 1.39 6.77 -2.39 -0.02 1.37 16 52 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 54 H 0.10 1.04 8.13 -2.39 -0.02 1.02 16 Total: -1.00 -65.48 409.72 -3.24 -68.72 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.85 Total: 18.23 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 7.41 Total: -12.88 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -13.52 Total: -120.05 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.48 -3.24 -68.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232366409.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.119 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds