Wall clock time and date at job start Wed Apr 1 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39609 * 120.12422 * 260.27409 * 3 2 1 5 5 C 1.38191 * 119.86702 * 179.76547 * 4 3 2 6 6 F 1.35099 * 119.93285 * 180.27375 * 5 4 3 7 7 C 1.38530 * 120.13105 * 0.51704 * 5 4 3 8 8 S 1.76198 * 119.87465 * 179.71763 * 7 5 4 9 9 O 1.42095 * 106.40054 * 23.55857 * 8 7 5 10 10 O 1.42100 * 106.40344 * 156.48144 * 8 7 5 11 11 N 1.65604 * 107.21514 * 270.02020 * 8 7 5 12 12 C 1.46489 * 119.99968 * 65.00231 * 11 8 7 13 13 C 1.50708 * 109.47266 * 164.99443 * 12 11 8 14 14 O 1.21293 * 119.99679 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00227 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99751 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00476 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99544 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99670 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47019 * 120.00397 * 20 18 16 23 23 H 1.48500 * 109.47139 * 240.00165 * 20 18 16 24 24 C 1.38546 * 120.25462 * 359.73873 * 7 5 4 25 25 F 1.35093 * 119.93717 * 180.02562 * 24 7 5 26 26 C 1.38194 * 120.12613 * 0.02562 * 24 7 5 27 27 H 1.08000 * 120.06333 * 0.02862 * 4 3 2 28 28 H 0.97003 * 119.99712 * 244.99664 * 11 8 7 29 29 H 1.08998 * 109.47743 * 284.99365 * 12 11 8 30 30 H 1.09001 * 109.47685 * 44.99900 * 12 11 8 31 31 H 0.96998 * 119.99493 * 0.02562 * 15 13 12 32 32 H 0.96996 * 119.99464 * 180.02562 * 19 18 16 33 33 H 1.07992 * 120.06261 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.2049 1.1902 5 6 4.6504 0.1997 1.1849 6 9 5.3297 0.3917 2.3368 7 6 5.3406 0.0029 0.0000 8 16 7.1025 0.0049 -0.0002 9 8 7.5043 -0.3265 1.3219 10 8 7.5046 -0.7368 -1.1437 11 7 7.5909 1.5658 -0.2599 12 6 7.2945 2.6009 0.7335 13 6 8.1390 3.8183 0.4578 14 8 8.9121 3.8211 -0.4768 15 7 8.0346 4.9042 1.2492 16 6 8.8025 6.0118 0.9981 17 1 9.4909 6.0143 0.1659 18 6 8.6944 7.1316 1.8138 19 7 7.8565 7.1286 2.8261 20 14 9.7402 8.6409 1.4712 21 1 10.5951 8.3915 0.2830 22 1 8.8572 9.8059 1.2095 23 1 10.5992 8.9256 2.6487 24 6 4.6506 -0.1951 -1.1851 25 9 5.3301 -0.3869 -2.3368 26 6 3.2687 -0.1967 -1.1912 27 1 2.7315 0.3626 2.1139 28 1 8.0732 1.7947 -1.0698 29 1 6.2398 2.8696 0.6747 30 1 7.5179 2.2220 1.7308 31 1 7.4161 4.9020 1.9964 32 1 7.7808 7.9105 3.3952 33 1 2.7320 -0.3507 -2.1155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352530415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:25 Heat of formation + Delta-G solvation = -127.079640 kcal Electronic energy + Delta-G solvation = -27247.004013 eV Core-core repulsion = 22650.982182 eV Total energy + Delta-G solvation = -4596.021831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.043 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.72888 -49.67032 -39.84343 -38.51406 -37.31340 -37.04598 -35.99880 -34.78751 -33.79928 -32.33492 -31.40607 -31.25317 -27.27496 -25.67701 -24.40982 -23.77981 -20.28680 -19.98127 -19.71521 -18.44904 -18.23464 -18.12666 -17.56587 -17.14996 -16.66196 -16.38933 -15.97104 -15.89029 -15.64097 -15.40644 -14.83654 -14.62561 -14.53593 -14.36383 -14.32782 -14.14178 -13.70950 -13.34914 -13.06974 -12.82329 -12.60774 -12.55007 -12.38864 -12.19962 -12.09615 -12.01490 -11.60508 -11.40672 -11.17721 -10.43009 -10.34570 -10.22466 -9.69791 -9.58253 -9.53414 -8.67166 -8.13725 -6.55221 -3.96864 -0.66045 0.13632 0.19131 1.80213 1.88158 2.68928 2.74399 2.87495 3.08085 3.21259 3.27860 3.29663 3.46431 3.50136 3.66703 3.69339 4.06776 4.06825 4.46906 4.53984 4.66249 4.73872 4.80177 5.10924 5.11487 5.20002 5.30353 5.62741 5.72913 5.79106 6.18015 6.68419 7.09602 7.43593 7.89639 8.41556 9.01914 9.34935 9.83093 10.61719 Molecular weight = 345.04amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003180 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.286371 B = 8801.632184 C = 9792.016478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C 0.247 3.753 3 C 0.089 3.911 4 C -0.141 4.141 5 C 0.235 3.765 6 F -0.091 7.091 7 C -0.746 4.746 8 S 2.697 3.303 9 O -0.933 6.933 10 O -0.938 6.938 11 N -1.088 6.088 12 C 0.102 3.898 13 C 0.435 3.565 14 O -0.588 6.588 15 N -0.551 5.551 16 C -0.304 4.304 17 H 0.107 0.893 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.237 3.763 25 F -0.093 7.093 26 C -0.143 4.143 27 H 0.165 0.835 28 H 0.431 0.569 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -14.396 -3.093 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.050 5.050 2 C -0.070 4.070 3 C 0.086 3.914 4 C -0.163 4.163 5 C 0.214 3.786 6 F -0.068 7.068 7 C -0.830 4.830 8 S 2.779 3.221 9 O -0.923 6.923 10 O -0.928 6.928 11 N -0.854 5.854 12 C -0.028 4.028 13 C 0.219 3.781 14 O -0.473 6.473 15 N -0.186 5.186 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.206 1.206 24 C 0.216 3.784 25 F -0.071 7.071 26 C -0.165 4.165 27 H 0.183 0.817 28 H 0.272 0.728 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.187 -14.986 -3.287 19.593 hybrid contribution 0.131 1.265 0.034 1.272 sum -12.055 -13.721 -3.253 18.552 Atomic orbital electron populations 1.81336 1.11469 1.06098 1.06136 1.25172 0.92016 0.95074 0.94716 1.15477 0.84917 0.97720 0.93332 1.21274 0.92175 1.03373 0.99467 1.16406 0.89326 0.92280 0.80629 1.91774 1.79271 1.90625 1.45141 1.31535 1.31616 1.22118 0.97705 1.02237 0.72622 0.72858 0.74425 1.93659 1.78761 1.81958 1.37883 1.93654 1.79905 1.68445 1.50787 1.55093 1.71185 1.26104 1.33035 1.21031 0.99719 0.89745 0.92346 1.19508 0.87621 0.84640 0.86368 1.90519 1.41716 1.82533 1.32567 1.41812 1.37323 1.12202 1.27270 1.19789 1.19157 0.90600 1.13787 0.87564 1.25314 0.97441 0.99528 0.95398 1.69612 1.35902 1.31262 1.16758 0.85763 0.79370 0.80387 0.78614 1.19109 1.20654 1.20597 1.16365 0.89241 0.92283 0.80510 1.91753 1.79341 1.90708 1.45260 1.21241 0.92147 1.03731 0.99356 0.81694 0.72849 0.90378 0.88245 0.77096 0.91647 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -3.64 18.54 41.83 0.78 -2.86 16 2 C 0.25 1.80 15.33 -22.47 -0.34 1.45 16 3 C 0.09 0.56 5.73 -106.95 -0.61 -0.06 16 4 C -0.14 -0.90 9.73 -39.09 -0.38 -1.28 16 5 C 0.23 2.12 7.20 -39.49 -0.28 1.84 16 6 F -0.09 -0.96 15.31 2.25 0.03 -0.93 16 7 C -0.75 -7.63 5.96 -39.36 -0.23 -7.87 16 8 S 2.70 35.73 5.62 -107.50 -0.60 35.12 16 9 O -0.93 -14.30 15.65 -57.17 -0.89 -15.19 16 10 O -0.94 -14.10 16.18 -57.17 -0.93 -15.02 16 11 N -1.09 -15.81 5.93 -11.66 -0.07 -15.88 16 12 C 0.10 1.59 6.70 -5.20 -0.03 1.55 16 13 C 0.43 9.37 7.85 -10.98 -0.09 9.28 16 14 O -0.59 -14.60 15.30 5.55 0.08 -14.52 16 15 N -0.55 -12.90 5.29 -10.96 -0.06 -12.96 16 16 C -0.30 -7.97 9.68 -14.93 -0.14 -8.12 16 17 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 18 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 19 N -0.89 -22.99 13.05 55.50 0.72 -22.27 16 20 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C 0.24 2.12 7.20 -39.48 -0.28 1.84 16 25 F -0.09 -0.97 15.31 2.25 0.03 -0.94 16 26 C -0.14 -0.90 9.73 -39.09 -0.38 -1.28 16 27 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.43 6.55 7.70 -34.47 -0.27 6.28 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.43 7.75 -51.93 -0.40 1.03 16 31 H 0.40 8.71 7.90 -40.82 -0.32 8.39 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -32.86 330.75 -5.59 -38.45 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -1.77 Total: 9.08 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.88 Total: -2.08 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 1.37 Total: -53.97 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.73 Total: -44.73 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.07 Total: -1.87 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.60 Total: 35.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.86 -5.59 -38.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352530415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.627 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds