Wall clock time and date at job start Wed Apr 1 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39609 * 120.12422 * 260.27409 * 3 2 1 5 5 C 1.38191 * 119.86702 * 179.76547 * 4 3 2 6 6 F 1.35099 * 119.93285 * 180.27375 * 5 4 3 7 7 C 1.38530 * 120.13105 * 0.51704 * 5 4 3 8 8 S 1.76198 * 119.87465 * 179.71763 * 7 5 4 9 9 O 1.42095 * 106.40054 * 23.55857 * 8 7 5 10 10 O 1.42100 * 106.40344 * 156.48144 * 8 7 5 11 11 N 1.65604 * 107.21514 * 270.02020 * 8 7 5 12 12 C 1.46489 * 119.99968 * 65.00231 * 11 8 7 13 13 C 1.50708 * 109.47266 * 164.99443 * 12 11 8 14 14 O 1.21293 * 119.99679 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00227 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99751 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00476 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99544 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99670 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47019 * 120.00397 * 20 18 16 23 23 H 1.48500 * 109.47139 * 240.00165 * 20 18 16 24 24 C 1.38546 * 120.25462 * 359.73873 * 7 5 4 25 25 F 1.35093 * 119.93717 * 180.02562 * 24 7 5 26 26 C 1.38194 * 120.12613 * 0.02562 * 24 7 5 27 27 H 1.08000 * 120.06333 * 0.02862 * 4 3 2 28 28 H 0.97003 * 119.99712 * 244.99664 * 11 8 7 29 29 H 1.08998 * 109.47743 * 284.99365 * 12 11 8 30 30 H 1.09001 * 109.47685 * 44.99900 * 12 11 8 31 31 H 0.96998 * 119.99493 * 0.02562 * 15 13 12 32 32 H 0.96996 * 119.99464 * 180.02562 * 19 18 16 33 33 H 1.07992 * 120.06261 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.2049 1.1902 5 6 4.6504 0.1997 1.1849 6 9 5.3297 0.3917 2.3368 7 6 5.3406 0.0029 0.0000 8 16 7.1025 0.0049 -0.0002 9 8 7.5043 -0.3265 1.3219 10 8 7.5046 -0.7368 -1.1437 11 7 7.5909 1.5658 -0.2599 12 6 7.2945 2.6009 0.7335 13 6 8.1390 3.8183 0.4578 14 8 8.9121 3.8211 -0.4768 15 7 8.0346 4.9042 1.2492 16 6 8.8025 6.0118 0.9981 17 1 9.4909 6.0143 0.1659 18 6 8.6944 7.1316 1.8138 19 7 7.8565 7.1286 2.8261 20 14 9.7402 8.6409 1.4712 21 1 10.5951 8.3915 0.2830 22 1 8.8572 9.8059 1.2095 23 1 10.5992 8.9256 2.6487 24 6 4.6506 -0.1951 -1.1851 25 9 5.3301 -0.3869 -2.3368 26 6 3.2687 -0.1967 -1.1912 27 1 2.7315 0.3626 2.1139 28 1 8.0732 1.7947 -1.0698 29 1 6.2398 2.8696 0.6747 30 1 7.5179 2.2220 1.7308 31 1 7.4161 4.9020 1.9964 32 1 7.7808 7.9105 3.3952 33 1 2.7320 -0.3507 -2.1155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352530415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:25 Heat of formation + Delta-G solvation = -152.361031 kcal Electronic energy + Delta-G solvation = -27248.100296 eV Core-core repulsion = 22650.982182 eV Total energy + Delta-G solvation = -4597.118114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.043 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.45654 -50.39660 -40.47727 -40.25465 -38.45324 -37.71006 -37.13568 -36.34934 -35.42674 -33.30761 -33.02266 -31.85814 -28.79500 -26.36635 -26.17034 -24.41845 -21.43113 -21.01699 -20.88352 -20.04987 -19.44175 -18.91068 -18.70803 -17.78622 -17.57773 -17.26179 -17.12170 -17.04391 -16.62929 -16.49815 -16.17522 -15.98337 -15.89253 -15.33423 -15.17241 -15.06106 -14.78012 -14.21011 -14.06139 -13.94647 -13.75314 -13.59262 -13.43513 -13.31353 -13.26011 -13.20258 -13.16401 -12.90798 -12.39886 -12.29327 -12.09749 -11.54118 -10.92457 -10.78089 -10.44957 -10.14143 -10.03950 -8.47470 -5.96190 -1.34907 -0.89329 -0.40281 1.15595 1.29213 1.37635 1.45761 1.58492 1.73689 1.96679 2.04833 2.25715 2.31199 2.46472 2.64782 2.73992 3.00862 3.12457 3.20100 3.54238 3.57700 3.91237 3.97169 4.13554 4.15972 4.36422 4.41854 4.49249 4.67501 4.71830 5.18683 5.43029 5.84240 5.99777 6.11233 6.54845 7.09800 7.50285 8.02909 8.69417 Molecular weight = 345.04amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003180 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.286371 B = 8801.632184 C = 9792.016478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.276 3.724 3 C 0.100 3.900 4 C -0.118 4.118 5 C 0.222 3.778 6 F -0.102 7.102 7 C -0.748 4.748 8 S 2.711 3.289 9 O -0.959 6.959 10 O -0.961 6.961 11 N -1.096 6.096 12 C 0.110 3.890 13 C 0.435 3.565 14 O -0.624 6.624 15 N -0.561 5.561 16 C -0.335 4.335 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.913 5.913 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.224 3.776 25 F -0.105 7.105 26 C -0.119 4.119 27 H 0.194 0.806 28 H 0.428 0.572 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.401 0.599 32 H 0.279 0.721 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 -14.522 -2.814 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.041 4.041 3 C 0.097 3.903 4 C -0.140 4.140 5 C 0.201 3.799 6 F -0.080 7.080 7 C -0.837 4.837 8 S 2.798 3.202 9 O -0.948 6.948 10 O -0.951 6.951 11 N -0.860 5.860 12 C -0.020 4.020 13 C 0.221 3.779 14 O -0.511 6.511 15 N -0.198 5.198 16 C -0.465 4.465 17 H 0.100 0.900 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.198 1.198 24 C 0.203 3.797 25 F -0.083 7.083 26 C -0.141 4.141 27 H 0.211 0.789 28 H 0.267 0.733 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.236 0.764 32 H 0.089 0.911 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.099 -15.121 -2.989 20.889 hybrid contribution 0.643 1.212 -0.085 1.374 sum -13.456 -13.910 -3.074 19.596 Atomic orbital electron populations 1.81393 1.12619 1.07421 1.07357 1.25008 0.91674 0.93847 0.93528 1.15388 0.84274 0.97376 0.93310 1.21508 0.90959 1.00857 1.00646 1.16504 0.90150 0.93492 0.79803 1.91750 1.79691 1.90913 1.45623 1.31000 1.29226 1.24314 0.99156 1.01403 0.73493 0.71959 0.73326 1.93624 1.80286 1.82135 1.38797 1.93623 1.81275 1.68716 1.51470 1.55120 1.72084 1.26184 1.32581 1.21038 1.00525 0.87182 0.93246 1.20469 0.87000 0.85518 0.84905 1.90496 1.43242 1.83492 1.33914 1.41845 1.37598 1.12331 1.27989 1.19722 1.20246 0.92425 1.14074 0.89956 1.26008 0.98300 1.01524 0.95006 1.69659 1.36497 1.32128 1.17076 0.84893 0.77968 0.77370 0.78256 1.19785 1.19606 1.19823 1.16486 0.90111 0.93458 0.79694 1.91728 1.79788 1.90995 1.45802 1.21480 0.90886 1.01113 1.00577 0.78871 0.73347 0.86445 0.86767 0.76417 0.91141 0.78923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.94 18.54 19.00 0.35 -6.58 16 2 C 0.28 3.07 15.33 88.33 1.35 4.43 16 3 C 0.10 0.86 5.73 -21.37 -0.12 0.74 16 4 C -0.12 -1.08 9.73 22.59 0.22 -0.86 16 5 C 0.22 3.45 7.20 22.33 0.16 3.62 16 6 F -0.10 -1.98 15.31 44.97 0.69 -1.29 16 7 C -0.75 -14.04 5.96 22.41 0.13 -13.90 16 8 S 2.71 70.90 5.62 -56.49 -0.32 70.58 16 9 O -0.96 -29.18 15.65 -128.00 -2.00 -31.18 16 10 O -0.96 -29.07 16.18 -128.00 -2.07 -31.14 16 11 N -1.10 -31.57 5.93 -190.80 -1.13 -32.70 16 12 C 0.11 3.32 6.70 85.64 0.57 3.89 16 13 C 0.44 18.88 7.85 87.66 0.69 19.57 16 14 O -0.62 -31.73 15.30 -3.07 -0.05 -31.78 16 15 N -0.56 -26.55 5.29 -306.97 -1.62 -28.17 16 16 C -0.34 -17.92 9.68 84.04 0.81 -17.10 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 19 N -0.91 -46.48 13.05 21.67 0.28 -46.20 16 20 Si 0.99 40.91 29.55 68.60 2.03 42.94 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 C 0.22 3.52 7.20 22.33 0.16 3.68 16 25 F -0.11 -2.08 15.31 44.97 0.69 -1.39 16 26 C -0.12 -1.07 9.73 22.59 0.22 -0.85 16 27 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 28 H 0.43 13.22 7.70 -96.74 -0.75 12.48 16 29 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.11 3.16 7.75 -2.39 -0.02 3.14 16 31 H 0.40 17.68 7.90 -92.71 -0.73 16.95 16 32 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 33 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -72.17 330.75 1.28 -70.89 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.23 Total: 22.73 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.67 Total: 3.30 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -2.12 Total: -113.66 kcal Atomic # 8 Polarization: -89.97 SS G_CDS: -4.12 Total: -94.10 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 1.38 Total: -2.68 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 70.90 SS G_CDS: -0.32 Total: 70.58 kcal Total: -72.17 1.28 -70.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352530415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.474 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds