Wall clock time and date at job start Wed Apr 1 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27946 * 1 3 3 Si 1.86803 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47163 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00527 * 3 2 1 6 6 H 1.48503 * 109.46972 * 150.00225 * 3 2 1 7 7 C 1.50706 * 119.99964 * 180.02562 * 2 1 3 8 8 C 1.53096 * 109.50770 * 122.83511 * 7 2 1 9 9 O 1.43016 * 109.25741 * 183.22082 * 8 7 2 10 10 C 1.43016 * 113.74148 * 58.66525 * 9 8 7 11 11 C 1.53094 * 109.26074 * 301.33500 * 10 9 8 12 12 N 1.47013 * 109.25974 * 56.84320 * 11 10 9 13 13 C 1.46897 * 110.99991 * 177.60381 * 12 11 10 14 14 C 1.50697 * 109.47647 * 287.55827 * 13 12 11 15 15 C 1.38368 * 119.92059 * 266.82217 * 14 13 12 16 16 C 1.38321 * 120.28952 * 179.97438 * 15 14 13 17 17 C 1.38127 * 120.15036 * 359.74246 * 16 15 14 18 18 Cl 1.73597 * 120.07739 * 180.25240 * 17 16 15 19 19 C 1.39555 * 119.85172 * 0.49011 * 17 16 15 20 Xx 1.56997 * 120.14785 * 179.78826 * 19 17 16 21 20 O 1.42000 * 119.99865 * 216.08800 * 20 19 17 22 21 O 1.41999 * 120.00158 * 36.08906 * 20 19 17 23 22 C 1.38090 * 119.93011 * 86.79913 * 14 13 12 24 23 Cl 1.73597 * 120.07324 * 359.97438 * 23 14 13 25 24 H 0.97001 * 119.99612 * 359.97438 * 1 2 3 26 25 H 1.09002 * 109.54040 * 242.94964 * 7 2 1 27 26 H 1.09001 * 109.50591 * 303.15109 * 8 7 2 28 27 H 1.08991 * 109.50667 * 63.23572 * 8 7 2 29 28 H 1.09001 * 109.49998 * 61.26919 * 10 9 8 30 29 H 1.08999 * 109.50856 * 181.35218 * 10 9 8 31 30 H 1.09001 * 109.50382 * 296.90871 * 11 10 9 32 31 H 1.08997 * 109.50880 * 176.78485 * 11 10 9 33 32 H 1.09000 * 109.47393 * 167.55145 * 13 12 11 34 33 H 1.09003 * 109.46744 * 47.56039 * 13 12 11 35 34 H 1.08001 * 119.85599 * 359.97438 * 15 14 13 36 35 H 1.08002 * 119.92010 * 180.02562 * 16 15 14 37 36 H 0.96703 * 113.99933 * 356.29701 * 21 20 19 38 37 H 0.96696 * 113.99786 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 2.4609 2.0465 -1.4001 5 1 1.4110 2.6527 0.7002 6 1 3.5111 1.4401 0.7000 7 6 2.0330 -1.3052 -0.0006 8 6 2.9662 -1.3561 -1.2131 9 8 3.6225 -2.6263 -1.2502 10 6 2.7241 -3.7367 -1.3233 11 6 1.7884 -3.7098 -0.1119 12 7 1.0800 -2.4221 -0.0748 13 6 0.1278 -2.3771 1.0428 14 6 -1.0491 -3.2670 0.7364 15 6 -2.1782 -2.7365 0.1380 16 6 -3.2626 -3.5464 -0.1471 17 6 -3.2227 -4.8926 0.1595 18 17 -4.5822 -5.9087 -0.2051 19 6 -2.0889 -5.4332 0.7677 20 8 -1.3816 -7.3933 2.3066 21 8 -2.6481 -7.9117 0.2630 22 6 -0.9981 -4.6101 1.0531 23 17 0.4199 -5.2739 1.8028 24 1 -0.4849 0.8401 0.0004 25 1 2.6198 -1.3877 0.9142 26 1 2.3855 -1.2198 -2.1254 27 1 3.7101 -0.5635 -1.1334 28 1 2.1364 -3.6695 -2.2388 29 1 3.2935 -4.6661 -1.3236 30 1 2.3714 -3.8308 0.8011 31 1 1.0650 -4.5210 -0.1926 32 1 -0.2181 -1.3531 1.1845 33 1 0.6185 -2.7238 1.9523 34 1 -2.2130 -1.6853 -0.1076 35 1 -4.1408 -3.1261 -0.6147 36 1 -0.9488 -6.6819 2.7983 37 1 -2.5645 -8.8265 0.5649 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237691613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:07 Heat of formation + Delta-G solvation = 156.424670 kcal Electronic energy + Delta-G solvation = -25251.574712 eV Core-core repulsion = 21286.221436 eV Total energy + Delta-G solvation = -3965.353276 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.052 amu Computer time = 6.02 seconds Orbital eigenvalues (eV) -41.58944 -40.48620 -38.26606 -37.88891 -37.52601 -35.90801 -33.24530 -33.05494 -32.98386 -32.22686 -31.95504 -29.28920 -25.96861 -25.79195 -24.12590 -22.86308 -22.27646 -20.80263 -18.63822 -18.48517 -17.66431 -17.60425 -17.18660 -16.56584 -16.28864 -16.06888 -15.91314 -15.82471 -15.68383 -15.28953 -14.99246 -14.86532 -14.75702 -14.38919 -14.24885 -13.80750 -13.28169 -13.20418 -12.95466 -12.81314 -12.59298 -12.45697 -12.36356 -12.24781 -12.09373 -11.61824 -11.52723 -11.47359 -11.31438 -10.78221 -10.51575 -10.21214 -10.02555 -9.87002 -9.52697 -6.39170 -3.03658 -0.70178 -0.57156 0.40097 0.45340 0.74597 0.83723 1.16152 1.44469 1.60809 1.75505 2.59538 2.75222 3.01338 3.14674 3.19260 3.34022 3.54378 3.65884 3.67393 3.85428 3.95777 4.07232 4.11734 4.22723 4.33494 4.40251 4.47484 4.52056 4.60239 4.71933 4.77257 4.82984 4.88055 5.01277 5.65198 5.74670 6.00776 6.12414 6.45041 6.54744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.003 4.003 3 Si 0.930 3.070 4 H -0.231 1.231 5 H -0.242 1.242 6 H -0.229 1.229 7 C 0.076 3.924 8 C 0.072 3.928 9 O -0.376 6.376 10 C 0.061 3.939 11 C 0.002 3.998 12 N -0.508 5.508 13 C 0.073 3.927 14 C -0.026 4.026 15 C -0.067 4.067 16 C -0.080 4.080 17 C -0.027 4.027 18 Cl 0.001 6.999 19 C 0.210 3.790 20 O -0.584 6.584 21 O -0.497 6.497 22 C -0.050 4.050 23 Cl -0.006 7.006 24 H 0.337 0.663 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.326 0.674 37 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 9.403 -0.834 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.225 5.225 2 C -0.251 4.251 3 Si 0.744 3.256 4 H -0.154 1.154 5 H -0.165 1.165 6 H -0.151 1.151 7 C -0.033 4.033 8 C -0.006 4.006 9 O -0.293 6.293 10 C -0.016 4.016 11 C -0.126 4.126 12 N -0.233 5.233 13 C -0.053 4.053 14 C -0.028 4.028 15 C -0.085 4.085 16 C -0.099 4.099 17 C -0.055 4.055 18 Cl 0.030 6.970 19 C 0.188 3.812 20 O -0.403 6.403 21 O -0.330 6.330 22 C -0.078 4.078 23 Cl 0.024 6.976 24 H 0.155 0.845 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.163 0.837 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.300 9.324 -1.749 9.492 hybrid contribution 0.378 -0.682 1.413 1.613 sum 0.678 8.643 -0.337 8.676 Atomic orbital electron populations 1.68053 1.09971 1.36167 1.08314 1.30226 0.97041 1.05011 0.92807 0.85718 0.81621 0.74674 0.83590 1.15389 1.16475 1.15107 1.21639 0.92838 0.88408 1.00447 1.22569 0.95045 0.86860 0.96175 1.88053 1.32743 1.13896 1.94638 1.22757 0.91844 0.89856 0.97125 1.23387 0.97638 0.92505 0.99054 1.62091 1.16052 1.01542 1.43639 1.21730 0.89839 1.01900 0.91866 1.19894 0.97688 0.88273 0.96913 1.21433 0.90173 1.02201 0.94705 1.21462 1.01086 0.87799 0.99529 1.21159 0.90483 0.91460 1.02352 1.98479 1.39223 1.66844 1.92436 1.29997 0.91475 0.61698 0.98068 1.93895 1.77320 1.23099 1.45944 1.93535 1.72126 1.24447 1.42886 1.21325 0.90821 0.91145 1.04480 1.98428 1.35824 1.84232 1.79161 0.84496 0.90259 0.91287 0.87993 0.91878 0.87963 0.93135 0.88902 0.84277 0.92991 0.81366 0.81211 0.83678 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 163. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 2.36 10.12 56.23 0.57 2.92 16 2 C 0.00 0.01 4.97 -13.89 -0.07 -0.06 16 3 Si 0.93 -3.93 27.98 -169.99 -4.76 -8.69 16 4 H -0.23 0.79 7.11 56.52 0.40 1.19 16 5 H -0.24 0.82 7.11 56.52 0.40 1.23 16 6 H -0.23 0.83 7.11 56.52 0.40 1.23 16 7 C 0.08 -0.19 2.08 -68.75 -0.14 -0.33 16 8 C 0.07 -0.15 5.81 37.21 0.22 0.07 16 9 O -0.38 -0.14 10.83 -35.23 -0.38 -0.52 16 10 C 0.06 -0.04 7.01 37.21 0.26 0.22 16 11 C 0.00 0.00 4.03 -3.71 -0.01 -0.02 16 12 N -0.51 0.78 4.30 -229.16 -0.99 -0.21 16 13 C 0.07 -0.16 4.42 -4.98 -0.02 -0.18 16 14 C -0.03 0.04 5.14 -104.63 -0.54 -0.50 16 15 C -0.07 0.20 9.68 -39.50 -0.38 -0.18 16 16 C -0.08 0.20 9.82 -39.59 -0.39 -0.19 16 17 C -0.03 -0.02 6.35 -39.13 -0.25 -0.27 16 18 Cl 0.00 0.00 26.93 -51.86 -1.40 -1.39 16 19 C 0.21 0.51 9.30 -38.59 -0.36 0.15 16 20 O -0.58 -4.45 17.19 -57.73 -0.99 -5.44 16 21 O -0.50 -3.21 15.70 -57.73 -0.91 -4.12 16 22 C -0.05 -0.02 5.41 -39.13 -0.21 -0.23 16 23 Cl -0.01 0.00 20.24 -51.86 -1.05 -1.05 16 24 H 0.34 -1.83 8.23 -40.82 -0.34 -2.17 16 25 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 26 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.10 -0.39 6.88 -51.93 -0.36 -0.75 16 28 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.05 -0.03 7.59 -51.93 -0.39 -0.43 16 31 H 0.09 -0.02 4.88 -51.93 -0.25 -0.27 16 32 H 0.14 -0.42 4.61 -51.99 -0.24 -0.66 16 33 H 0.05 -0.10 6.94 -51.93 -0.36 -0.46 16 34 H 0.17 -0.82 8.06 -52.49 -0.42 -1.24 16 35 H 0.17 -0.87 8.06 -52.49 -0.42 -1.29 16 36 H 0.33 1.59 6.08 45.56 0.28 1.87 16 37 H 0.35 1.54 9.20 45.56 0.42 1.96 16 LS Contribution 331.71 15.07 5.00 5.00 Total: 0.00 -7.71 331.71 -9.38 -17.09 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -2.58 Total: -2.07 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.90 Total: -1.52 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -0.42 Total: 2.72 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -2.28 Total: -10.08 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: -4.76 Total: -8.69 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -2.45 Total: -2.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -7.71 -9.38 -17.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237691613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.515 kcal (2) G-P(sol) polarization free energy of solvation -7.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds