Wall clock time and date at job start Wed Apr 1 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27946 * 1 3 3 Si 1.86803 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47163 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00527 * 3 2 1 6 6 H 1.48503 * 109.46972 * 150.00225 * 3 2 1 7 7 C 1.50706 * 119.99964 * 180.02562 * 2 1 3 8 8 C 1.53096 * 109.50770 * 122.83511 * 7 2 1 9 9 O 1.43016 * 109.25741 * 183.22082 * 8 7 2 10 10 C 1.43016 * 113.74148 * 58.66525 * 9 8 7 11 11 C 1.53094 * 109.26074 * 301.33500 * 10 9 8 12 12 N 1.47013 * 109.25974 * 56.84320 * 11 10 9 13 13 C 1.46897 * 110.99991 * 177.60381 * 12 11 10 14 14 C 1.50697 * 109.47647 * 287.55827 * 13 12 11 15 15 C 1.38368 * 119.92059 * 266.82217 * 14 13 12 16 16 C 1.38321 * 120.28952 * 179.97438 * 15 14 13 17 17 C 1.38127 * 120.15036 * 359.74246 * 16 15 14 18 18 Cl 1.73597 * 120.07739 * 180.25240 * 17 16 15 19 19 C 1.39555 * 119.85172 * 0.49011 * 17 16 15 20 Xx 1.56997 * 120.14785 * 179.78826 * 19 17 16 21 20 O 1.42000 * 119.99865 * 216.08800 * 20 19 17 22 21 O 1.41999 * 120.00158 * 36.08906 * 20 19 17 23 22 C 1.38090 * 119.93011 * 86.79913 * 14 13 12 24 23 Cl 1.73597 * 120.07324 * 359.97438 * 23 14 13 25 24 H 0.97001 * 119.99612 * 359.97438 * 1 2 3 26 25 H 1.09002 * 109.54040 * 242.94964 * 7 2 1 27 26 H 1.09001 * 109.50591 * 303.15109 * 8 7 2 28 27 H 1.08991 * 109.50667 * 63.23572 * 8 7 2 29 28 H 1.09001 * 109.49998 * 61.26919 * 10 9 8 30 29 H 1.08999 * 109.50856 * 181.35218 * 10 9 8 31 30 H 1.09001 * 109.50382 * 296.90871 * 11 10 9 32 31 H 1.08997 * 109.50880 * 176.78485 * 11 10 9 33 32 H 1.09000 * 109.47393 * 167.55145 * 13 12 11 34 33 H 1.09003 * 109.46744 * 47.56039 * 13 12 11 35 34 H 1.08001 * 119.85599 * 359.97438 * 15 14 13 36 35 H 1.08002 * 119.92010 * 180.02562 * 16 15 14 37 36 H 0.96703 * 113.99933 * 356.29701 * 21 20 19 38 37 H 0.96696 * 113.99786 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 2.4609 2.0465 -1.4001 5 1 1.4110 2.6527 0.7002 6 1 3.5111 1.4401 0.7000 7 6 2.0330 -1.3052 -0.0006 8 6 2.9662 -1.3561 -1.2131 9 8 3.6225 -2.6263 -1.2502 10 6 2.7241 -3.7367 -1.3233 11 6 1.7884 -3.7098 -0.1119 12 7 1.0800 -2.4221 -0.0748 13 6 0.1278 -2.3771 1.0428 14 6 -1.0491 -3.2670 0.7364 15 6 -2.1782 -2.7365 0.1380 16 6 -3.2626 -3.5464 -0.1471 17 6 -3.2227 -4.8926 0.1595 18 17 -4.5822 -5.9087 -0.2051 19 6 -2.0889 -5.4332 0.7677 20 8 -1.3816 -7.3933 2.3066 21 8 -2.6481 -7.9117 0.2630 22 6 -0.9981 -4.6101 1.0531 23 17 0.4199 -5.2739 1.8028 24 1 -0.4849 0.8401 0.0004 25 1 2.6198 -1.3877 0.9142 26 1 2.3855 -1.2198 -2.1254 27 1 3.7101 -0.5635 -1.1334 28 1 2.1364 -3.6695 -2.2388 29 1 3.2935 -4.6661 -1.3236 30 1 2.3714 -3.8308 0.8011 31 1 1.0650 -4.5210 -0.1926 32 1 -0.2181 -1.3531 1.1845 33 1 0.6185 -2.7238 1.9523 34 1 -2.2130 -1.6853 -0.1076 35 1 -4.1408 -3.1261 -0.6147 36 1 -0.9488 -6.6819 2.7983 37 1 -2.5645 -8.8265 0.5649 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237691613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:06 Heat of formation + Delta-G solvation = 153.290115 kcal Electronic energy + Delta-G solvation = -25251.710637 eV Core-core repulsion = 21286.221436 eV Total energy + Delta-G solvation = -3965.489201 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.052 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58405 -40.48584 -38.39124 -37.90345 -37.52651 -35.74393 -33.48363 -33.20425 -33.06531 -32.11568 -32.05611 -29.25050 -25.90106 -25.66768 -24.17732 -22.79503 -22.23393 -20.59709 -18.69993 -18.27412 -17.68459 -17.55480 -17.06475 -16.49641 -16.26759 -16.13740 -15.96641 -15.81738 -15.67971 -15.42787 -14.95375 -14.76445 -14.61504 -14.30236 -14.20016 -13.69067 -13.19527 -13.18278 -12.77544 -12.69894 -12.51415 -12.48375 -12.33228 -12.15964 -12.04978 -11.76814 -11.55654 -11.41560 -11.29066 -10.69320 -10.66493 -10.29514 -10.25532 -9.71356 -9.41855 -6.82321 -3.21593 -0.77021 -0.75860 0.29254 0.67708 0.76262 1.07991 1.51409 1.70745 1.79454 1.95400 2.67209 2.77616 2.89377 3.00249 3.31276 3.49157 3.52825 3.63435 3.86426 3.92065 4.10147 4.13682 4.23070 4.30554 4.44151 4.49949 4.59497 4.70207 4.76201 4.80621 4.86638 4.96790 4.97876 5.20729 5.79828 5.84081 5.94166 6.12217 6.28606 6.91171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.242 1.242 5 H -0.250 1.250 6 H -0.240 1.240 7 C 0.072 3.928 8 C 0.065 3.935 9 O -0.394 6.394 10 C 0.060 3.940 11 C 0.005 3.995 12 N -0.511 5.511 13 C 0.073 3.927 14 C -0.017 4.017 15 C -0.040 4.040 16 C -0.055 4.055 17 C -0.036 4.036 18 Cl -0.006 7.006 19 C 0.230 3.770 20 O -0.687 6.687 21 O -0.550 6.550 22 C -0.052 4.052 23 Cl -0.003 7.003 24 H 0.350 0.650 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.052 0.948 34 H 0.206 0.794 35 H 0.214 0.786 36 H 0.320 0.680 37 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 13.703 -1.978 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.246 4.246 3 Si 0.782 3.218 4 H -0.166 1.166 5 H -0.174 1.174 6 H -0.162 1.162 7 C -0.037 4.037 8 C -0.013 4.013 9 O -0.313 6.313 10 C -0.016 4.016 11 C -0.123 4.123 12 N -0.236 5.236 13 C -0.054 4.054 14 C -0.019 4.019 15 C -0.058 4.058 16 C -0.073 4.073 17 C -0.064 4.064 18 Cl 0.024 6.976 19 C 0.212 3.788 20 O -0.509 6.509 21 O -0.384 6.384 22 C -0.080 4.080 23 Cl 0.027 6.973 24 H 0.169 0.831 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.156 0.844 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.345 13.675 -2.924 13.989 hybrid contribution 0.548 -1.525 1.576 2.261 sum 0.204 12.150 -1.348 12.226 Atomic orbital electron populations 1.67910 1.09894 1.37269 1.08017 1.30113 0.97158 1.04341 0.92969 0.85168 0.80588 0.73647 0.82373 1.16570 1.17355 1.16212 1.21708 0.92867 0.88595 1.00494 1.22767 0.95686 0.86311 0.96518 1.88027 1.33664 1.14844 1.94743 1.22767 0.91842 0.89941 0.97100 1.23293 0.97379 0.92780 0.98845 1.62109 1.16369 1.01432 1.43683 1.21871 0.89406 1.02307 0.91772 1.20216 0.98923 0.86417 0.96313 1.21916 0.88528 1.03609 0.91716 1.22001 1.02507 0.85027 0.97751 1.21647 0.89539 0.92582 1.02652 1.98495 1.39350 1.67351 1.92451 1.29673 0.94411 0.52234 1.02474 1.93948 1.78329 1.28247 1.50383 1.93457 1.73700 1.25228 1.45993 1.21591 0.90208 0.91454 1.04727 1.98448 1.35426 1.84363 1.79082 0.83104 0.89781 0.91104 0.86373 0.91930 0.87853 0.93540 0.89836 0.82501 0.93023 0.77737 0.76965 0.84370 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 6.98 10.12 24.11 0.24 7.23 16 2 C 0.00 -0.02 4.97 88.68 0.44 0.42 16 3 Si 0.97 -10.05 27.98 68.60 1.92 -8.13 16 4 H -0.24 2.07 7.11 99.48 0.71 2.78 16 5 H -0.25 2.23 7.11 99.48 0.71 2.93 16 6 H -0.24 2.08 7.11 99.48 0.71 2.79 16 7 C 0.07 -0.50 2.08 44.18 0.09 -0.41 16 8 C 0.07 -0.35 5.81 72.01 0.42 0.07 16 9 O -0.39 -0.15 10.83 -148.98 -1.61 -1.76 16 10 C 0.06 -0.08 7.01 72.01 0.50 0.43 16 11 C 0.00 -0.01 4.03 86.31 0.35 0.34 16 12 N -0.51 2.50 4.30 -878.94 -3.78 -1.28 16 13 C 0.07 -0.49 4.42 85.56 0.38 -0.11 16 14 C -0.02 0.09 5.14 -19.87 -0.10 -0.01 16 15 C -0.04 0.42 9.68 22.32 0.22 0.64 16 16 C -0.06 0.50 9.82 22.26 0.22 0.72 16 17 C -0.04 -0.01 6.35 22.56 0.14 0.13 16 18 Cl -0.01 -0.03 26.93 -2.72 -0.07 -0.10 16 19 C 0.23 1.32 9.30 22.91 0.21 1.54 16 20 O -0.69 -14.74 17.19 -127.47 -2.19 -16.93 16 21 O -0.55 -9.78 15.70 -127.47 -2.00 -11.78 16 22 C -0.05 -0.04 5.41 22.56 0.12 0.08 16 23 Cl 0.00 -0.01 20.24 -2.72 -0.06 -0.06 16 24 H 0.35 -5.15 8.23 -92.71 -0.76 -5.91 16 25 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.12 -1.08 6.88 -2.39 -0.02 -1.10 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.11 16 29 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.05 -0.05 7.59 -2.39 -0.02 -0.07 16 31 H 0.08 -0.01 4.88 -2.39 -0.01 -0.03 16 32 H 0.16 -1.55 4.61 -2.50 -0.01 -1.56 16 33 H 0.05 -0.29 6.94 -2.39 -0.02 -0.31 16 34 H 0.21 -3.36 8.06 -2.91 -0.02 -3.38 16 35 H 0.21 -3.46 8.06 -2.91 -0.02 -3.48 16 36 H 0.32 4.94 6.08 -74.06 -0.45 4.49 16 37 H 0.35 5.33 9.20 -74.06 -0.68 4.64 16 Total: 0.00 -24.12 331.71 -4.53 -28.65 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 0.03 Total: 0.34 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 2.99 Total: 3.84 kcal Atomic # 7 Polarization: 9.48 SS G_CDS: -3.54 Total: 5.94 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -5.81 Total: -30.47 kcal Atomic # 14 Polarization: -10.05 SS G_CDS: 1.92 Total: -8.13 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.13 Total: -0.16 kcal Total: -24.12 -4.53 -28.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237691613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.942 kcal (2) G-P(sol) polarization free energy of solvation -24.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds