Wall clock time and date at job start Wed Apr 1 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47398 * 2 1 4 4 O 1.45201 * 109.47195 * 120.00437 * 2 1 3 5 5 C 1.34227 * 116.99859 * 269.99771 * 4 2 1 6 6 O 1.20826 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00202 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47180 * 180.02562 * 7 5 4 9 9 C 1.76200 * 99.99634 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00348 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99452 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00399 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99819 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46965 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47268 * 119.99918 * 13 11 9 16 16 H 1.48501 * 109.47164 * 239.99963 * 13 11 9 17 17 C 1.50702 * 109.47367 * 240.00327 * 2 1 3 18 18 O 1.21289 * 120.00020 * 245.00179 * 17 2 1 19 19 N 1.34774 * 119.99994 * 64.99538 * 17 2 1 20 20 C 1.40027 * 120.00165 * 184.63068 * 19 17 2 21 21 C 1.38870 * 120.03458 * 144.91430 * 20 19 17 22 22 C 1.38130 * 119.99808 * 180.30058 * 21 20 19 23 23 C 1.38437 * 120.06756 * 359.44436 * 22 21 20 24 24 F 1.35090 * 119.96476 * 180.25844 * 23 22 21 25 25 C 1.38673 * 120.06843 * 0.55241 * 23 22 21 26 26 F 1.35099 * 119.99623 * 179.69735 * 25 23 22 27 27 C 1.38323 * 120.00139 * 359.72925 * 25 23 22 28 28 H 1.08998 * 109.47058 * 299.99762 * 1 2 3 29 29 H 1.08996 * 109.46939 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47218 * 300.00337 * 7 5 4 32 32 H 1.08999 * 109.46628 * 60.00386 * 7 5 4 33 33 H 0.97001 * 119.99605 * 180.02562 * 12 11 9 34 34 H 0.97002 * 120.00133 * 4.63499 * 19 17 2 35 35 H 1.07993 * 119.99978 * 0.02562 * 21 20 19 36 36 H 1.07994 * 119.96766 * 179.72122 * 22 21 20 37 37 H 1.08002 * 120.03341 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7183 -0.5774 3.5495 8 16 2.8889 0.6837 4.8365 9 6 3.4726 -0.3137 6.1666 10 1 3.6171 -1.3743 6.0233 11 6 3.7468 0.2639 7.3986 12 7 3.5703 1.5565 7.5735 13 14 4.3664 -0.7933 8.8086 14 1 4.4787 -2.2037 8.3575 15 1 5.6992 -0.3050 9.2449 16 1 3.4132 -0.7118 9.9444 17 6 2.0324 -0.7103 -1.2305 18 8 2.6531 -1.7467 -1.1216 19 7 1.7919 -0.1941 -2.4520 20 6 2.1731 -0.9017 -3.5986 21 6 1.3893 -0.8442 -4.7435 22 6 1.7628 -1.5475 -5.8722 23 6 2.9242 -2.3008 -5.8673 24 9 3.2902 -2.9836 -6.9740 25 6 3.7091 -2.3601 -4.7256 26 9 4.8391 -3.1006 -4.7205 27 6 3.3348 -1.6617 -3.5919 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 2.0088 -1.3371 3.8774 32 1 3.6872 -1.0410 3.3639 33 1 3.7623 1.9601 8.4344 34 1 1.3548 0.6677 -2.5369 35 1 0.4854 -0.2533 -4.7500 36 1 1.1505 -1.5061 -6.7608 37 1 3.9459 -1.7072 -2.7026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058681583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:37 Heat of formation + Delta-G solvation = -177.428134 kcal Electronic energy + Delta-G solvation = -26100.305837 eV Core-core repulsion = 21605.641075 eV Total energy + Delta-G solvation = -4494.664762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.80600 -48.87788 -41.28978 -40.19157 -38.69605 -36.35597 -35.23678 -32.55527 -32.52047 -31.33678 -29.79792 -29.30252 -25.63978 -25.34024 -24.01750 -23.09867 -21.51040 -20.65675 -18.97327 -18.35540 -18.15868 -17.77801 -17.35331 -17.01188 -16.63848 -16.37171 -16.18259 -15.77136 -15.32404 -15.27756 -14.87957 -14.87481 -14.43530 -14.35295 -14.18653 -13.82412 -13.60712 -13.23660 -13.03404 -12.77042 -12.72092 -12.69192 -12.25775 -11.96987 -11.79582 -11.12082 -11.11791 -10.93474 -10.84014 -10.77836 -10.26546 -10.12558 -9.92298 -9.49034 -9.15653 -8.70898 -8.42055 -6.65354 -6.31275 -4.04238 0.33694 0.50720 1.89337 1.96962 2.47663 2.73005 2.88360 3.17995 3.22062 3.27583 3.37766 3.46197 3.84985 3.99646 4.11334 4.15094 4.35415 4.48113 4.56776 4.63767 4.79596 4.84621 5.05121 5.23060 5.28745 5.32010 5.36378 5.38926 5.46115 5.59048 5.71521 5.74235 5.75904 6.03730 6.29495 6.41543 6.68541 7.49879 7.52949 7.96683 8.27449 9.14862 10.76261 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.001864 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.378448 B =15018.785054 C =15908.802510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.071 3.929 3 H 0.117 0.883 4 O -0.332 6.332 5 C 0.482 3.518 6 O -0.485 6.485 7 C -0.128 4.128 8 S -0.057 6.057 9 C -0.535 4.535 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.922 3.078 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.520 3.480 18 O -0.488 6.488 19 N -0.670 5.670 20 C 0.171 3.829 21 C -0.125 4.125 22 C -0.105 4.105 23 C 0.050 3.950 24 F -0.129 7.129 25 C 0.091 3.909 26 F -0.123 7.123 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.269 0.731 34 H 0.419 0.581 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -3.100 -27.333 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.134 0.866 4 O -0.249 6.249 5 C 0.324 3.676 6 O -0.370 6.370 7 C -0.276 4.276 8 S 0.169 5.831 9 C -0.684 4.684 10 H 0.096 0.904 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.748 3.252 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.306 3.694 18 O -0.360 6.360 19 N -0.318 5.318 20 C 0.076 3.924 21 C -0.146 4.146 22 C -0.124 4.124 23 C 0.029 3.971 24 F -0.108 7.108 25 C 0.070 3.930 26 F -0.102 7.102 27 C -0.154 4.154 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.256 0.744 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.095 -2.273 -27.134 28.138 hybrid contribution 0.677 -1.690 0.654 1.934 sum -6.418 -3.963 -26.480 27.534 Atomic orbital electron populations 1.22176 0.91383 1.04269 1.04486 1.22258 0.96224 0.97736 0.82574 0.86573 1.86694 1.77570 1.41562 1.19066 1.23506 0.73942 0.85940 0.84247 1.90662 1.46903 1.16166 1.83314 1.23326 1.04809 1.05961 0.93476 1.85370 1.86817 1.08637 1.02271 1.22886 1.51689 0.96558 0.97220 0.90434 1.25009 0.94895 0.95409 0.98212 1.70015 1.45466 1.10016 1.24753 0.86059 0.78483 0.79958 0.80690 1.19453 1.20480 1.20494 1.20566 0.79442 0.85440 0.83927 1.90775 1.36855 1.22530 1.85790 1.43380 1.61433 1.23311 1.03641 1.17392 0.92674 0.95523 0.86843 1.20835 0.99982 1.01978 0.91768 1.20851 0.95044 0.96525 0.99986 1.17686 0.96929 0.99246 0.83270 1.91531 1.91423 1.77677 1.50141 1.17466 0.85291 0.96287 0.93926 1.91561 1.47642 1.74117 1.96849 1.21243 0.97075 0.98613 0.98430 0.89728 0.90267 0.90680 0.87621 0.87607 0.92095 0.74413 0.83610 0.83075 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.50 37.16 0.35 -1.01 16 2 C 0.07 0.79 2.97 -27.88 -0.08 0.71 16 3 H 0.12 1.20 7.16 -51.93 -0.37 0.82 16 4 O -0.33 -5.13 9.42 -45.88 -0.43 -5.56 16 5 C 0.48 8.71 7.95 36.01 0.29 9.00 16 6 O -0.49 -9.61 15.08 -18.75 -0.28 -9.89 16 7 C -0.13 -2.55 6.27 36.01 0.23 -2.32 16 8 S -0.06 -1.48 20.58 -107.50 -2.21 -3.69 16 9 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 10 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 13 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.52 5.54 7.03 -10.99 -0.08 5.46 16 18 O -0.49 -7.16 13.95 -14.06 -0.20 -7.36 16 19 N -0.67 -4.47 5.30 -9.85 -0.05 -4.53 16 20 C 0.17 1.30 6.30 -83.67 -0.53 0.77 16 21 C -0.13 -0.62 9.96 -39.39 -0.39 -1.02 16 22 C -0.10 -0.59 10.02 -39.55 -0.40 -0.99 16 23 C 0.05 0.43 7.30 -39.35 -0.29 0.14 16 24 F -0.13 -1.26 17.18 2.25 0.04 -1.22 16 25 C 0.09 0.93 7.30 -39.39 -0.29 0.65 16 26 F -0.12 -1.46 17.18 2.25 0.04 -1.42 16 27 C -0.13 -1.33 8.67 -39.34 -0.34 -1.68 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 32 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.42 1.22 8.77 -40.82 -0.36 0.86 16 35 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.16 1.93 6.22 -52.49 -0.33 1.60 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -34.83 356.07 -6.91 -41.74 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.56 Total: -1.92 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.33 Total: -2.84 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.68 Total: -29.16 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.91 Total: -22.81 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.83 -6.91 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.692 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds