Wall clock time and date at job start Wed Apr 1 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47398 * 2 1 4 4 O 1.45201 * 109.47195 * 120.00437 * 2 1 3 5 5 C 1.34227 * 116.99859 * 269.99771 * 4 2 1 6 6 O 1.20826 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00202 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47180 * 180.02562 * 7 5 4 9 9 C 1.76200 * 99.99634 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00348 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99452 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00399 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99819 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46965 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47268 * 119.99918 * 13 11 9 16 16 H 1.48501 * 109.47164 * 239.99963 * 13 11 9 17 17 C 1.50702 * 109.47367 * 240.00327 * 2 1 3 18 18 O 1.21289 * 120.00020 * 245.00179 * 17 2 1 19 19 N 1.34774 * 119.99994 * 64.99538 * 17 2 1 20 20 C 1.40027 * 120.00165 * 184.63068 * 19 17 2 21 21 C 1.38870 * 120.03458 * 144.91430 * 20 19 17 22 22 C 1.38130 * 119.99808 * 180.30058 * 21 20 19 23 23 C 1.38437 * 120.06756 * 359.44436 * 22 21 20 24 24 F 1.35090 * 119.96476 * 180.25844 * 23 22 21 25 25 C 1.38673 * 120.06843 * 0.55241 * 23 22 21 26 26 F 1.35099 * 119.99623 * 179.69735 * 25 23 22 27 27 C 1.38323 * 120.00139 * 359.72925 * 25 23 22 28 28 H 1.08998 * 109.47058 * 299.99762 * 1 2 3 29 29 H 1.08996 * 109.46939 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47218 * 300.00337 * 7 5 4 32 32 H 1.08999 * 109.46628 * 60.00386 * 7 5 4 33 33 H 0.97001 * 119.99605 * 180.02562 * 12 11 9 34 34 H 0.97002 * 120.00133 * 4.63499 * 19 17 2 35 35 H 1.07993 * 119.99978 * 0.02562 * 21 20 19 36 36 H 1.07994 * 119.96766 * 179.72122 * 22 21 20 37 37 H 1.08002 * 120.03341 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7183 -0.5774 3.5495 8 16 2.8889 0.6837 4.8365 9 6 3.4726 -0.3137 6.1666 10 1 3.6171 -1.3743 6.0233 11 6 3.7468 0.2639 7.3986 12 7 3.5703 1.5565 7.5735 13 14 4.3664 -0.7933 8.8086 14 1 4.4787 -2.2037 8.3575 15 1 5.6992 -0.3050 9.2449 16 1 3.4132 -0.7118 9.9444 17 6 2.0324 -0.7103 -1.2305 18 8 2.6531 -1.7467 -1.1216 19 7 1.7919 -0.1941 -2.4520 20 6 2.1731 -0.9017 -3.5986 21 6 1.3893 -0.8442 -4.7435 22 6 1.7628 -1.5475 -5.8722 23 6 2.9242 -2.3008 -5.8673 24 9 3.2902 -2.9836 -6.9740 25 6 3.7091 -2.3601 -4.7256 26 9 4.8391 -3.1006 -4.7205 27 6 3.3348 -1.6617 -3.5919 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 2.0088 -1.3371 3.8774 32 1 3.6872 -1.0410 3.3639 33 1 3.7623 1.9601 8.4344 34 1 1.3548 0.6677 -2.5369 35 1 0.4854 -0.2533 -4.7500 36 1 1.1505 -1.5061 -6.7608 37 1 3.9459 -1.7072 -2.7026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058681583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:36 Heat of formation + Delta-G solvation = -199.106795 kcal Electronic energy + Delta-G solvation = -26101.245894 eV Core-core repulsion = 21605.641075 eV Total energy + Delta-G solvation = -4495.604819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.55982 -49.63743 -42.20712 -41.32840 -39.47606 -37.64098 -35.99989 -34.62207 -33.46500 -31.94438 -31.16118 -30.09583 -27.72542 -26.16760 -24.68375 -23.84825 -22.58554 -21.62653 -20.00632 -19.72543 -18.93139 -18.91149 -18.53226 -17.85606 -17.46555 -17.41749 -17.14997 -16.90880 -16.73111 -16.37397 -16.06685 -16.05830 -15.60593 -15.30207 -15.06950 -14.77132 -14.56787 -14.34896 -14.25259 -13.83256 -13.68045 -13.41672 -13.34635 -13.19532 -12.93217 -12.81583 -12.66336 -12.53599 -12.03293 -11.78564 -11.70308 -11.49022 -11.18473 -11.04230 -10.40816 -10.12336 -9.34729 -8.73878 -8.39148 -6.17982 -0.29905 -0.08483 0.78030 1.03023 1.16425 1.35149 1.41026 1.48961 1.58827 2.04278 2.22331 2.30324 2.75191 2.96110 3.12767 3.24431 3.34333 3.54611 3.65224 3.76439 3.82616 3.87341 3.95573 4.13949 4.28294 4.42392 4.58396 4.63047 4.70172 4.80262 4.93703 4.95548 5.05300 5.10252 5.16295 5.40896 5.67880 6.08900 6.17339 6.57655 6.79889 7.03363 8.70134 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.001864 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.378448 B =15018.785054 C =15908.802510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.063 3.937 3 H 0.126 0.874 4 O -0.338 6.338 5 C 0.494 3.506 6 O -0.507 6.507 7 C -0.113 4.113 8 S -0.125 6.125 9 C -0.550 4.550 10 H 0.083 0.917 11 C 0.018 3.982 12 N -0.907 5.907 13 Si 0.998 3.002 14 H -0.260 1.260 15 H -0.273 1.273 16 H -0.272 1.272 17 C 0.524 3.476 18 O -0.536 6.536 19 N -0.644 5.644 20 C 0.162 3.838 21 C -0.096 4.096 22 C -0.090 4.090 23 C 0.039 3.961 24 F -0.139 7.139 25 C 0.061 3.939 26 F -0.144 7.144 27 C -0.152 4.152 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.440 0.560 35 H 0.195 0.805 36 H 0.189 0.811 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 -3.068 -29.030 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 H 0.144 0.856 4 O -0.254 6.254 5 C 0.336 3.664 6 O -0.394 6.394 7 C -0.261 4.261 8 S 0.102 5.898 9 C -0.698 4.698 10 H 0.101 0.899 11 C -0.188 4.188 12 N -0.544 5.544 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.197 1.197 17 C 0.311 3.689 18 O -0.411 6.411 19 N -0.294 5.294 20 C 0.067 3.933 21 C -0.116 4.116 22 C -0.108 4.108 23 C 0.018 3.982 24 F -0.118 7.118 25 C 0.041 3.959 26 F -0.123 7.123 27 C -0.173 4.173 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.282 0.718 35 H 0.212 0.788 36 H 0.206 0.794 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.200 -2.213 -28.883 30.394 hybrid contribution 1.256 -1.691 0.975 2.321 sum -7.945 -3.904 -27.908 29.278 Atomic orbital electron populations 1.22230 0.88755 1.04698 1.06104 1.22724 0.98258 0.97702 0.80838 0.85636 1.86624 1.77412 1.41722 1.19688 1.22928 0.73574 0.85385 0.84508 1.90650 1.47975 1.16931 1.83829 1.23110 1.06094 1.04119 0.92760 1.85376 1.87065 1.12477 1.04848 1.23228 1.51735 0.96915 0.97904 0.89860 1.26073 0.94847 0.96739 1.01104 1.70149 1.46593 1.11947 1.25678 0.84915 0.77923 0.78324 0.76873 1.18353 1.19880 1.19714 1.20499 0.78806 0.84733 0.84828 1.90781 1.39099 1.24717 1.86496 1.43090 1.60346 1.23819 1.02144 1.17561 0.92375 0.95494 0.87869 1.21302 1.00206 1.00452 0.89634 1.21313 0.93582 0.94529 1.01418 1.17996 0.97877 0.99927 0.82398 1.91504 1.91711 1.78102 1.50442 1.17742 0.85610 0.97464 0.95121 1.91494 1.48892 1.74860 1.97031 1.21120 0.98404 1.00220 0.97544 0.91105 0.85625 0.90821 0.86017 0.86617 0.91781 0.71802 0.78817 0.79422 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.50 71.98 0.68 -1.54 16 2 C 0.06 1.30 2.97 29.85 0.09 1.39 16 3 H 0.13 2.38 7.16 -2.39 -0.02 2.36 16 4 O -0.34 -10.29 9.42 -45.05 -0.42 -10.71 16 5 C 0.49 17.81 7.95 71.24 0.57 18.37 16 6 O -0.51 -20.11 15.08 21.96 0.33 -19.78 16 7 C -0.11 -4.49 6.27 71.24 0.45 -4.04 16 8 S -0.12 -6.60 20.58 -56.49 -1.16 -7.76 16 9 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 10 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 11 C 0.02 0.99 5.49 84.86 0.47 1.45 16 12 N -0.91 -53.92 13.22 21.65 0.29 -53.63 16 13 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 C 0.52 10.53 7.03 87.66 0.62 11.14 16 18 O -0.54 -15.99 13.95 15.69 0.22 -15.78 16 19 N -0.64 -6.81 5.30 -303.47 -1.61 -8.42 16 20 C 0.16 2.08 6.30 38.12 0.24 2.32 16 21 C -0.10 -0.50 9.96 22.40 0.22 -0.28 16 22 C -0.09 -0.66 10.02 22.29 0.22 -0.44 16 23 C 0.04 0.63 7.30 22.42 0.16 0.79 16 24 F -0.14 -2.64 17.18 44.97 0.77 -1.86 16 25 C 0.06 1.31 7.30 22.39 0.16 1.47 16 26 F -0.14 -3.75 17.18 44.97 0.77 -2.98 16 27 C -0.15 -3.13 8.67 22.43 0.19 -2.94 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.13 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.12 4.44 8.14 -2.40 -0.02 4.43 16 32 H 0.12 4.38 8.14 -2.40 -0.02 4.36 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.44 0.63 8.77 -92.71 -0.81 -0.18 16 35 H 0.19 -0.76 8.06 -2.91 -0.02 -0.78 16 36 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.14 3.53 6.22 -2.91 -0.02 3.51 16 Total: -1.00 -80.68 356.07 6.27 -74.41 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 0.34 Total: 3.89 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 4.72 Total: -2.36 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -1.32 Total: -62.05 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: 0.13 Total: -46.27 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 1.54 Total: -4.84 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.16 Total: -7.76 kcal Total: -80.68 6.27 -74.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.696 kcal (2) G-P(sol) polarization free energy of solvation -80.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds