Wall clock time and date at job start Wed Apr 1 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47227 * 2 1 4 4 C 1.36880 * 120.00583 * 110.93251 * 3 2 1 5 5 H 1.07995 * 119.99916 * 149.71348 * 4 3 2 6 6 C 1.39036 * 119.99703 * 329.71802 * 4 3 2 7 7 N 1.31370 * 120.00031 * 12.87615 * 6 4 3 8 8 Si 1.86804 * 119.99986 * 192.87664 * 6 4 3 9 9 H 1.48503 * 109.46770 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47159 * 119.99871 * 8 6 4 11 11 H 1.48499 * 109.47097 * 239.99736 * 8 6 4 12 12 C 1.34781 * 119.99335 * 290.93437 * 3 2 1 13 13 O 1.21606 * 119.99529 * 201.97947 * 12 3 2 14 14 C 1.47650 * 120.00580 * 21.97574 * 12 3 2 15 15 C 1.39696 * 120.15633 * 336.37541 * 14 12 3 16 16 C 1.37880 * 119.85464 * 179.97438 * 15 14 12 17 17 S 1.76197 * 119.90359 * 179.97438 * 16 15 14 18 18 O 1.42103 * 104.28107 * 206.07373 * 17 16 15 19 19 O 1.42099 * 104.28232 * 333.93472 * 17 16 15 20 20 C 1.81405 * 104.45089 * 90.00476 * 17 16 15 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 17 16 22 22 C 1.38435 * 120.18949 * 0.02673 * 16 15 14 23 23 C 1.38281 * 120.33105 * 359.95436 * 22 16 15 24 24 C 1.38133 * 120.13875 * 0.04237 * 23 22 16 25 25 Cl 1.73596 * 120.10001 * 180.25538 * 24 23 22 26 26 H 1.09002 * 109.47223 * 22.34264 * 1 2 3 27 27 H 1.09000 * 109.47010 * 142.33737 * 1 2 3 28 28 H 1.08992 * 109.47785 * 262.34071 * 1 2 3 29 29 H 1.08996 * 109.47442 * 239.99603 * 2 1 3 30 30 H 1.09002 * 109.46965 * 119.98917 * 2 1 3 31 31 H 0.97008 * 120.00003 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.07611 * 359.95868 * 15 14 12 33 33 H 1.09002 * 109.46446 * 300.00070 * 20 17 16 34 34 H 1.08999 * 109.46779 * 59.99360 * 20 17 16 35 35 H 1.09006 * 109.46897 * 299.99853 * 21 20 17 36 36 H 1.08994 * 109.47307 * 59.99238 * 21 20 17 37 37 H 1.08997 * 109.47071 * 180.02562 * 21 20 17 38 38 H 1.08008 * 119.83515 * 179.97438 * 22 16 15 39 39 H 1.08003 * 119.93138 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6458 1.8854 1.1071 5 1 3.4057 2.6449 0.9981 6 6 2.3047 1.4196 2.3720 7 7 1.5769 0.3332 2.4977 8 14 2.8814 2.3387 3.8926 9 1 3.6798 3.5219 3.4827 10 1 1.7027 2.7854 4.6777 11 1 3.7195 1.4398 4.7261 12 6 1.8497 2.1555 -1.0903 13 8 2.5672 3.1213 -1.2669 14 6 0.7940 1.8311 -2.0702 15 6 0.3076 0.5254 -2.1713 16 6 -0.6787 0.2295 -3.0882 17 16 -1.2926 -1.4170 -3.2174 18 8 -1.7647 -1.5113 -4.5544 19 8 -0.2190 -2.2283 -2.7606 20 6 -2.6778 -1.4767 -2.0476 21 6 -3.3021 -2.8734 -2.0670 22 6 -1.1872 1.2220 -3.9084 23 6 -0.7117 2.5171 -3.8146 24 6 0.2762 2.8288 -2.9008 25 17 0.8677 4.4563 -2.7793 26 1 -0.3634 0.9505 -0.3907 27 1 -0.3633 -0.8135 -0.6279 28 1 -0.3634 -0.1370 1.0184 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.3387 0.0084 3.3802 32 1 0.7034 -0.2506 -1.5329 33 1 -2.3153 -1.2551 -1.0438 34 1 -3.4274 -0.7392 -2.3343 35 1 -3.6644 -3.0955 -3.0709 36 1 -2.5522 -3.6106 -1.7802 37 1 -4.1347 -2.9091 -1.3645 38 1 -1.9594 0.9837 -4.6249 39 1 -1.1133 3.2865 -4.4574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067166922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:03 Heat of formation + Delta-G solvation = -4.300655 kcal Electronic energy + Delta-G solvation = -27105.156870 eV Core-core repulsion = 23169.796159 eV Total energy + Delta-G solvation = -3935.360711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.33367 -37.76747 -37.12754 -36.32049 -35.92741 -35.41282 -33.38907 -32.96478 -31.11374 -30.80769 -29.29271 -25.51571 -24.38463 -23.36664 -22.87224 -22.27604 -20.17412 -18.73021 -17.58405 -17.11647 -16.80593 -16.49669 -16.19143 -15.79966 -15.19081 -14.81686 -14.39229 -14.32554 -14.20470 -13.82435 -13.54918 -13.28605 -13.17046 -12.81545 -12.68332 -12.39624 -12.09353 -12.01350 -11.94515 -11.78391 -11.58370 -11.43460 -11.32391 -11.16237 -11.02230 -10.75563 -10.61500 -10.47001 -10.37848 -10.29254 -10.07869 -9.07904 -8.84607 -8.56967 -8.55698 -7.76859 -6.40707 -4.06154 0.00126 0.75316 1.21313 2.38955 2.84911 3.02988 3.17220 3.19442 3.26265 3.79878 3.94809 4.04878 4.17905 4.42675 4.51315 4.57478 4.83274 4.90261 4.97227 5.01076 5.29238 5.36639 5.44556 5.49218 5.58547 5.68051 5.72799 5.85204 5.94957 5.99296 6.10540 6.23313 6.25558 6.36425 6.73940 7.01777 7.23761 7.50883 8.03687 8.39744 8.98323 9.20543 9.74210 10.49914 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.005124 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.474165 B = 5462.958670 C = 7428.377960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 N -0.438 5.438 4 C -0.293 4.293 5 H 0.102 0.898 6 C 0.034 3.966 7 N -0.873 5.873 8 Si 0.928 3.072 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.491 3.509 13 O -0.555 6.555 14 C -0.127 4.127 15 C -0.019 4.019 16 C -0.687 4.687 17 S 2.495 3.505 18 O -0.941 6.941 19 O -0.931 6.931 20 C -0.614 4.614 21 C -0.148 4.148 22 C -0.011 4.011 23 C -0.153 4.153 24 C 0.052 3.948 25 Cl -0.033 7.033 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.153 0.847 31 H 0.270 0.730 32 H 0.207 0.793 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -4.280 -7.044 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.042 4.042 3 N -0.157 5.157 4 C -0.421 4.421 5 H 0.120 0.880 6 C -0.169 4.169 7 N -0.513 5.513 8 Si 0.755 3.245 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.279 3.721 13 O -0.437 6.437 14 C -0.133 4.133 15 C -0.037 4.037 16 C -0.774 4.774 17 S 2.675 3.325 18 O -0.939 6.939 19 O -0.928 6.928 20 C -0.744 4.744 21 C -0.207 4.207 22 C -0.031 4.031 23 C -0.172 4.172 24 C 0.023 3.977 25 Cl -0.003 7.003 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.169 0.831 31 H 0.081 0.919 32 H 0.223 0.777 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.162 0.838 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.805 -4.389 -7.434 13.830 hybrid contribution -0.233 1.359 1.169 1.808 sum -11.038 -3.031 -6.264 13.048 Atomic orbital electron populations 1.22837 0.98404 0.99226 1.02503 1.22360 0.92978 0.84884 1.03951 1.43475 1.50359 1.09273 1.12588 1.19747 1.18715 1.20909 0.82709 0.88006 1.25440 0.96073 0.96039 0.99332 1.69561 1.37874 1.19758 1.24151 0.85821 0.78447 0.79801 0.80461 1.19097 1.20516 1.20636 1.17803 0.85908 0.84652 0.83694 1.90678 1.46012 1.30853 1.76158 1.20447 1.00925 0.92904 0.99018 1.23609 0.90457 0.98699 0.90968 1.30419 1.13769 1.23383 1.09852 1.05468 0.76539 0.74389 0.76087 1.93546 1.82380 1.85781 1.32166 1.93590 1.50624 1.66019 1.82559 1.30279 1.18818 1.06824 1.18452 1.21551 1.02641 0.92318 1.04155 1.20824 0.96479 0.91220 0.94564 1.20986 0.98530 0.97523 1.00194 1.21306 0.94243 0.87426 0.94719 1.98403 1.87218 1.17739 1.96935 0.92204 0.94466 0.90153 0.94001 0.83059 0.91867 0.77700 0.84030 0.84591 0.90962 0.90594 0.89705 0.83811 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 7.81 37.16 0.29 -2.87 16 2 C 0.08 1.74 4.88 -4.04 -0.02 1.72 16 3 N -0.44 -10.80 2.70 -120.23 -0.32 -11.12 16 4 C -0.29 -7.68 9.25 -15.00 -0.14 -7.82 16 5 H 0.10 2.81 7.49 -52.49 -0.39 2.42 16 6 C 0.03 0.82 5.43 -17.45 -0.09 0.73 16 7 N -0.87 -20.70 9.07 55.50 0.50 -20.20 16 8 Si 0.93 19.59 29.57 -169.99 -5.03 14.56 16 9 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 C 0.49 11.98 7.05 -12.42 -0.09 11.89 16 13 O -0.55 -14.83 14.37 5.27 0.08 -14.76 16 14 C -0.13 -2.61 4.90 -104.94 -0.51 -3.12 16 15 C -0.02 -0.34 5.01 -39.17 -0.20 -0.54 16 16 C -0.69 -10.22 5.62 -39.64 -0.22 -10.44 16 17 S 2.49 32.10 4.61 -107.50 -0.50 31.61 16 18 O -0.94 -13.59 17.11 -57.54 -0.98 -14.57 16 19 O -0.93 -14.70 16.59 -57.54 -0.95 -15.66 16 20 C -0.61 -5.46 6.63 37.16 0.25 -5.21 16 21 C -0.15 -1.14 9.92 37.16 0.37 -0.77 16 22 C -0.01 -0.15 9.46 -39.49 -0.37 -0.52 16 23 C -0.15 -2.21 9.82 -39.60 -0.39 -2.60 16 24 C 0.05 0.95 6.34 -39.05 -0.25 0.70 16 25 Cl -0.03 -0.61 26.33 -51.86 -1.37 -1.97 16 26 H 0.06 1.13 5.14 -51.93 -0.27 0.86 16 27 H 0.04 0.55 4.10 -51.93 -0.21 0.34 16 28 H 0.08 1.52 7.34 -51.93 -0.38 1.14 16 29 H 0.04 0.85 6.36 -51.93 -0.33 0.52 16 30 H 0.15 3.49 5.23 -51.93 -0.27 3.22 16 31 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 32 H 0.21 3.72 1.40 -78.63 -0.11 3.61 16 33 H 0.14 1.20 6.84 -51.92 -0.35 0.85 16 34 H 0.14 0.89 8.14 -51.92 -0.42 0.46 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 1.48 7.56 -52.48 -0.40 1.08 16 39 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -31.63 334.20 -8.88 -40.51 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.97 Total: 5.42 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.38 Total: -18.85 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.18 Total: -31.32 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.86 Total: -44.99 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Atomic # 16 Polarization: 32.10 SS G_CDS: -0.50 Total: 31.61 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.37 Total: -1.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.63 -8.88 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067166922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.208 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds