Wall clock time and date at job start Wed Apr 1 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47227 * 2 1 4 4 C 1.36880 * 120.00583 * 110.93251 * 3 2 1 5 5 H 1.07995 * 119.99916 * 149.71348 * 4 3 2 6 6 C 1.39036 * 119.99703 * 329.71802 * 4 3 2 7 7 N 1.31370 * 120.00031 * 12.87615 * 6 4 3 8 8 Si 1.86804 * 119.99986 * 192.87664 * 6 4 3 9 9 H 1.48503 * 109.46770 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47159 * 119.99871 * 8 6 4 11 11 H 1.48499 * 109.47097 * 239.99736 * 8 6 4 12 12 C 1.34781 * 119.99335 * 290.93437 * 3 2 1 13 13 O 1.21606 * 119.99529 * 201.97947 * 12 3 2 14 14 C 1.47650 * 120.00580 * 21.97574 * 12 3 2 15 15 C 1.39696 * 120.15633 * 336.37541 * 14 12 3 16 16 C 1.37880 * 119.85464 * 179.97438 * 15 14 12 17 17 S 1.76197 * 119.90359 * 179.97438 * 16 15 14 18 18 O 1.42103 * 104.28107 * 206.07373 * 17 16 15 19 19 O 1.42099 * 104.28232 * 333.93472 * 17 16 15 20 20 C 1.81405 * 104.45089 * 90.00476 * 17 16 15 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 17 16 22 22 C 1.38435 * 120.18949 * 0.02673 * 16 15 14 23 23 C 1.38281 * 120.33105 * 359.95436 * 22 16 15 24 24 C 1.38133 * 120.13875 * 0.04237 * 23 22 16 25 25 Cl 1.73596 * 120.10001 * 180.25538 * 24 23 22 26 26 H 1.09002 * 109.47223 * 22.34264 * 1 2 3 27 27 H 1.09000 * 109.47010 * 142.33737 * 1 2 3 28 28 H 1.08992 * 109.47785 * 262.34071 * 1 2 3 29 29 H 1.08996 * 109.47442 * 239.99603 * 2 1 3 30 30 H 1.09002 * 109.46965 * 119.98917 * 2 1 3 31 31 H 0.97008 * 120.00003 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.07611 * 359.95868 * 15 14 12 33 33 H 1.09002 * 109.46446 * 300.00070 * 20 17 16 34 34 H 1.08999 * 109.46779 * 59.99360 * 20 17 16 35 35 H 1.09006 * 109.46897 * 299.99853 * 21 20 17 36 36 H 1.08994 * 109.47307 * 59.99238 * 21 20 17 37 37 H 1.08997 * 109.47071 * 180.02562 * 21 20 17 38 38 H 1.08008 * 119.83515 * 179.97438 * 22 16 15 39 39 H 1.08003 * 119.93138 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6458 1.8854 1.1071 5 1 3.4057 2.6449 0.9981 6 6 2.3047 1.4196 2.3720 7 7 1.5769 0.3332 2.4977 8 14 2.8814 2.3387 3.8926 9 1 3.6798 3.5219 3.4827 10 1 1.7027 2.7854 4.6777 11 1 3.7195 1.4398 4.7261 12 6 1.8497 2.1555 -1.0903 13 8 2.5672 3.1213 -1.2669 14 6 0.7940 1.8311 -2.0702 15 6 0.3076 0.5254 -2.1713 16 6 -0.6787 0.2295 -3.0882 17 16 -1.2926 -1.4170 -3.2174 18 8 -1.7647 -1.5113 -4.5544 19 8 -0.2190 -2.2283 -2.7606 20 6 -2.6778 -1.4767 -2.0476 21 6 -3.3021 -2.8734 -2.0670 22 6 -1.1872 1.2220 -3.9084 23 6 -0.7117 2.5171 -3.8146 24 6 0.2762 2.8288 -2.9008 25 17 0.8677 4.4563 -2.7793 26 1 -0.3634 0.9505 -0.3907 27 1 -0.3633 -0.8135 -0.6279 28 1 -0.3634 -0.1370 1.0184 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.3387 0.0084 3.3802 32 1 0.7034 -0.2506 -1.5329 33 1 -2.3153 -1.2551 -1.0438 34 1 -3.4274 -0.7392 -2.3343 35 1 -3.6644 -3.0955 -3.0709 36 1 -2.5522 -3.6106 -1.7802 37 1 -4.1347 -2.9091 -1.3645 38 1 -1.9594 0.9837 -4.6249 39 1 -1.1133 3.2865 -4.4574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067166922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:03 Heat of formation + Delta-G solvation = -25.605677 kcal Electronic energy + Delta-G solvation = -27106.080725 eV Core-core repulsion = 23169.796159 eV Total energy + Delta-G solvation = -3936.284566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85863 -39.31064 -38.25003 -37.79480 -37.10084 -37.01003 -34.66397 -34.00253 -32.74810 -32.20996 -30.77523 -27.30341 -25.15478 -24.85451 -24.27996 -23.65855 -21.70066 -19.81460 -19.24395 -18.62937 -18.21548 -17.68982 -17.26361 -17.04044 -16.61507 -16.34589 -15.97411 -15.75142 -15.50661 -15.15221 -14.91333 -14.65110 -14.22024 -14.04336 -13.76772 -13.56407 -13.36558 -13.30994 -13.18996 -13.13925 -12.98803 -12.85360 -12.76399 -12.41717 -12.30936 -12.22962 -12.09423 -12.08864 -11.78814 -11.64525 -11.38569 -10.90866 -10.39761 -10.17919 -9.91557 -9.61333 -8.25109 -6.01505 -0.97151 -0.53590 -0.09613 1.02090 1.37137 1.42856 1.54237 1.73906 1.84611 2.22649 2.45554 2.82447 2.89999 3.03100 3.08973 3.53834 3.70762 3.76207 3.88554 4.03007 4.12046 4.21301 4.27310 4.42906 4.49330 4.58810 4.67904 4.69504 4.76559 4.80802 4.85457 4.93394 4.99285 5.20774 5.33483 5.50223 5.56906 5.58342 6.16066 6.53671 7.09458 7.35649 7.89097 8.63395 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.005124 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.474165 B = 5462.958670 C = 7428.377960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 N -0.451 5.451 4 C -0.338 4.338 5 H 0.070 0.930 6 C 0.011 3.989 7 N -0.874 5.874 8 Si 0.986 3.014 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.268 1.268 12 C 0.479 3.521 13 O -0.595 6.595 14 C -0.160 4.160 15 C -0.026 4.026 16 C -0.685 4.685 17 S 2.494 3.506 18 O -0.957 6.957 19 O -0.968 6.968 20 C -0.589 4.589 21 C -0.162 4.162 22 C 0.008 3.992 23 C -0.142 4.142 24 C 0.036 3.964 25 Cl -0.047 7.047 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.135 0.865 31 H 0.278 0.722 32 H 0.199 0.801 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.188 0.812 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 -5.482 -7.693 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.043 4.043 3 N -0.170 5.170 4 C -0.466 4.466 5 H 0.088 0.912 6 C -0.192 4.192 7 N -0.513 5.513 8 Si 0.810 3.190 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.193 1.193 12 C 0.270 3.730 13 O -0.481 6.481 14 C -0.165 4.165 15 C -0.044 4.044 16 C -0.770 4.770 17 S 2.676 3.324 18 O -0.954 6.954 19 O -0.965 6.965 20 C -0.722 4.722 21 C -0.221 4.221 22 C -0.011 4.011 23 C -0.161 4.161 24 C 0.008 3.992 25 Cl -0.018 7.018 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.215 0.785 33 H 0.168 0.832 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.205 0.795 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.432 -5.609 -8.111 17.480 hybrid contribution 0.777 1.621 1.252 2.191 sum -13.655 -3.988 -6.859 15.793 Atomic orbital electron populations 1.22691 0.95869 1.00373 1.02802 1.22412 0.95251 0.83329 1.03314 1.43622 1.50663 1.10396 1.12297 1.19580 1.20364 1.22156 0.84452 0.91181 1.26010 0.96023 0.96415 1.00744 1.69640 1.37204 1.19395 1.25056 0.84991 0.78190 0.78296 0.77510 1.20645 1.19540 1.19277 1.18465 0.86242 0.84125 0.84208 1.90618 1.47677 1.32490 1.77294 1.20182 1.01274 0.94944 1.00062 1.23386 0.91526 0.97305 0.92193 1.30842 1.12498 1.25159 1.08500 1.05640 0.77200 0.72893 0.76626 1.93523 1.82510 1.85361 1.33997 1.93551 1.53509 1.66346 1.83104 1.30128 1.16568 1.09035 1.16514 1.21782 1.03396 0.91195 1.05699 1.21419 0.95933 0.90094 0.93668 1.21430 0.96690 0.99070 0.98923 1.21596 0.95477 0.86504 0.95628 1.98392 1.87669 1.18618 1.97080 0.92649 0.90978 0.90840 0.93478 0.84796 0.91129 0.78538 0.83198 0.81080 0.89850 0.90801 0.87201 0.79471 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 7.81 71.98 0.56 -5.25 16 2 C 0.08 3.51 4.88 86.38 0.42 3.93 16 3 N -0.45 -23.43 2.70 -652.55 -1.76 -25.19 16 4 C -0.34 -18.78 9.25 84.10 0.78 -18.00 16 5 H 0.07 4.21 7.49 -2.91 -0.02 4.19 16 6 C 0.01 0.53 5.43 84.95 0.46 0.99 16 7 N -0.87 -41.81 9.07 21.68 0.20 -41.61 16 8 Si 0.99 40.98 29.57 68.60 2.03 43.01 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 12 C 0.48 24.69 7.05 86.73 0.61 25.31 16 13 O -0.60 -34.01 14.37 -4.05 -0.06 -34.07 16 14 C -0.16 -6.63 4.90 -20.07 -0.10 -6.73 16 15 C -0.03 -0.91 5.01 22.54 0.11 -0.79 16 16 C -0.69 -18.51 5.62 22.23 0.12 -18.39 16 17 S 2.49 56.43 4.61 -56.49 -0.26 56.17 16 18 O -0.96 -24.18 17.11 -127.65 -2.18 -26.36 16 19 O -0.97 -29.16 16.59 -127.65 -2.12 -31.28 16 20 C -0.59 -7.61 6.63 71.98 0.48 -7.13 16 21 C -0.16 -1.75 9.92 71.98 0.71 -1.04 16 22 C 0.01 0.18 9.46 22.33 0.21 0.39 16 23 C -0.14 -3.67 9.82 22.25 0.22 -3.45 16 24 C 0.04 1.32 6.34 22.61 0.14 1.46 16 25 Cl -0.05 -1.79 26.33 -2.72 -0.07 -1.86 16 26 H 0.05 2.08 5.14 -2.39 -0.01 2.06 16 27 H 0.07 2.04 4.10 -2.39 -0.01 2.03 16 28 H 0.07 2.73 7.34 -2.39 -0.02 2.71 16 29 H 0.05 1.99 6.36 -2.39 -0.02 1.98 16 30 H 0.13 6.39 5.23 -2.39 -0.01 6.38 16 31 H 0.28 12.27 8.31 -92.70 -0.77 11.50 16 32 H 0.20 7.13 1.40 -27.47 -0.04 7.09 16 33 H 0.15 1.84 6.84 -2.39 -0.02 1.82 16 34 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.19 2.69 7.56 -2.91 -0.02 2.67 16 39 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -73.97 334.20 1.59 -72.38 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.08 Total: 17.53 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 4.74 Total: -28.71 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -1.57 Total: -66.80 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -4.36 Total: -91.72 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: 56.43 SS G_CDS: -0.26 Total: 56.17 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.86 kcal Total: -73.97 1.59 -72.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067166922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.772 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds