Wall clock time and date at job start Wed Apr 1 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00258 * 2 1 4 4 O 1.20828 * 119.99676 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00475 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47228 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99693 * 263.10019 * 6 5 3 8 8 H 1.08005 * 119.99707 * 142.06172 * 7 6 5 9 9 C 1.38946 * 120.00501 * 322.05824 * 7 6 5 10 10 N 1.31410 * 120.00256 * 158.25757 * 9 7 6 11 11 Si 1.86803 * 119.99882 * 338.26447 * 9 7 6 12 12 H 1.48510 * 109.46902 * 95.91006 * 11 9 7 13 13 H 1.48499 * 109.47233 * 215.91096 * 11 9 7 14 14 H 1.48501 * 109.47172 * 335.91518 * 11 9 7 15 15 C 1.34774 * 120.00349 * 83.10710 * 6 5 3 16 16 O 1.21298 * 119.99742 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00305 * 180.02562 * 15 6 5 18 18 S 1.81398 * 109.47256 * 179.97438 * 17 15 6 19 19 C 1.76200 * 103.00117 * 179.97438 * 18 17 15 20 20 C 1.38964 * 120.04406 * 0.02630 * 19 18 17 21 21 C 1.38108 * 119.98716 * 179.97438 * 20 19 18 22 22 C 1.38434 * 120.08208 * 359.97438 * 21 20 19 23 23 F 1.35097 * 119.95580 * 180.28015 * 22 21 20 24 24 C 1.38673 * 120.08953 * 0.02562 * 22 21 20 25 25 F 1.35097 * 119.99680 * 180.02562 * 24 22 21 26 26 C 1.38307 * 120.00952 * 359.97438 * 24 22 21 27 27 H 1.08994 * 109.47617 * 300.00606 * 1 2 3 28 28 H 1.09004 * 109.46808 * 60.00726 * 1 2 3 29 29 H 1.09007 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46679 * 59.99510 * 5 3 2 31 31 H 1.08999 * 109.46914 * 300.00260 * 5 3 2 32 32 H 0.97000 * 119.99964 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47363 * 59.99176 * 17 15 6 34 34 H 1.08999 * 109.46848 * 299.99518 * 17 15 6 35 35 H 1.07998 * 120.00058 * 359.97375 * 20 19 18 36 36 H 1.08004 * 119.95635 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.04062 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6796 0.0011 7 6 4.3132 3.2968 -1.1774 8 1 4.0349 4.3269 -1.3445 9 6 5.0074 2.5972 -2.1568 10 7 4.9608 2.9971 -3.4078 11 14 6.0068 1.0880 -1.6954 12 1 5.1944 -0.1335 -1.9270 13 1 7.2335 1.0323 -2.5305 14 1 6.3869 1.1652 -0.2620 15 6 4.0380 3.3654 1.1600 16 8 3.7443 2.8194 2.2026 17 6 4.4647 4.8107 1.1604 18 16 4.4381 5.4485 2.8583 19 6 4.9575 7.1207 2.6618 20 6 5.2621 7.6106 1.3975 21 6 5.6686 8.9217 1.2448 22 6 5.7726 9.7491 2.3497 23 9 6.1651 11.0327 2.1966 24 6 5.4695 9.2637 3.6128 25 9 5.5713 10.0729 4.6898 26 6 5.0621 7.9514 3.7701 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7804 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.4457 2.5089 -4.0914 33 1 3.7795 5.3920 0.5434 34 1 5.4742 4.8916 0.7573 35 1 5.1809 6.9662 0.5347 36 1 5.9047 9.3020 0.2619 37 1 4.8263 7.5727 4.7537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120491296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:33 Heat of formation + Delta-G solvation = -160.975371 kcal Electronic energy + Delta-G solvation = -27004.528976 eV Core-core repulsion = 22510.577660 eV Total energy + Delta-G solvation = -4493.951316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.53513 -48.60688 -40.16554 -38.83090 -38.80098 -36.05093 -35.11041 -32.28923 -31.26137 -30.93152 -30.04681 -28.29830 -26.44791 -25.02183 -23.49200 -22.96503 -21.13761 -19.54837 -18.58436 -17.75312 -17.54345 -17.37403 -17.10376 -16.80971 -16.37941 -16.01973 -15.89878 -15.63016 -15.34967 -15.02771 -14.83621 -14.63211 -14.21590 -14.00050 -13.87410 -13.35515 -13.28865 -13.21191 -12.95748 -12.66838 -12.44823 -12.08346 -11.96310 -11.89969 -11.67780 -11.51902 -11.20746 -10.78916 -10.44941 -10.33002 -10.07221 -10.02207 -9.66950 -9.58246 -9.12011 -9.07315 -8.25005 -7.30901 -6.77596 -4.42614 0.70777 0.86101 1.42821 2.48911 2.72637 2.79480 2.86939 3.05193 3.07132 3.16045 3.45210 3.71398 3.83561 4.02107 4.23348 4.44553 4.63680 4.80573 4.94541 5.25491 5.30737 5.33161 5.36679 5.41443 5.47290 5.56586 5.63844 5.69128 5.70212 5.72420 5.79881 5.91092 5.94231 6.57200 6.72483 6.88843 7.69545 7.89274 8.25163 8.56004 8.90917 9.22099 10.31818 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.002975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.465509 B = 9409.460895 C =10534.089122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.451 3.549 4 O -0.490 6.490 5 C 0.110 3.890 6 N -0.440 5.440 7 C -0.356 4.356 8 H 0.109 0.891 9 C 0.071 3.929 10 N -0.843 5.843 11 Si 0.861 3.139 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.254 1.254 15 C 0.510 3.490 16 O -0.573 6.573 17 C -0.120 4.120 18 S -0.024 6.024 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.100 4.100 22 C 0.048 3.952 23 F -0.132 7.132 24 C 0.086 3.914 25 F -0.129 7.129 26 C -0.115 4.115 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.280 0.720 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 3.362 6.363 7.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.375 6.375 5 C -0.015 4.015 6 N -0.161 5.161 7 C -0.483 4.483 8 H 0.126 0.874 9 C -0.139 4.139 10 N -0.476 5.476 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.177 1.177 15 C 0.298 3.702 16 O -0.457 6.457 17 C -0.270 4.270 18 S 0.223 5.777 19 C -0.191 4.191 20 C -0.143 4.143 21 C -0.120 4.120 22 C 0.025 3.975 23 F -0.111 7.111 24 C 0.064 3.936 25 F -0.108 7.108 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.465 2.693 7.648 8.122 hybrid contribution 0.692 0.444 -1.341 1.573 sum 0.227 3.137 6.307 7.048 Atomic orbital electron populations 1.23155 0.77320 1.02950 1.02324 1.86510 1.22828 1.34312 1.84851 1.24614 0.92718 0.81294 0.72274 1.90619 1.66584 1.36280 1.43980 1.21391 0.87132 0.87756 1.05207 1.43214 1.57547 1.08410 1.06896 1.19092 1.37415 1.00165 0.91597 0.87400 1.25365 0.95841 0.98145 0.94529 1.69756 1.37578 1.40408 0.99825 0.87155 0.81043 0.82538 0.80664 1.19385 1.20365 1.17716 1.19285 0.80455 0.87085 0.83339 1.90626 1.53441 1.70171 1.31428 1.23695 1.07823 0.98865 0.96655 1.86129 1.81124 0.99217 1.11254 1.22122 1.01260 1.00314 0.95390 1.21318 1.00416 0.95753 0.96806 1.21008 0.99658 0.93330 0.98046 1.17598 1.06234 0.80541 0.93163 1.91509 1.88718 1.34581 1.96301 1.17456 1.04486 0.89378 0.82245 1.91521 1.93914 1.72194 1.53134 1.20534 1.02913 0.90743 0.99838 0.92230 0.92162 0.88625 0.87079 0.87037 0.90936 0.86608 0.86045 0.83487 0.83348 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.48 10.56 -39.24 -0.41 -6.89 16 3 C 0.45 9.37 7.98 36.01 0.29 9.65 16 4 O -0.49 -11.44 16.01 -18.75 -0.30 -11.74 16 5 C 0.11 2.28 4.49 -5.20 -0.02 2.25 16 6 N -0.44 -9.73 1.74 -116.10 -0.20 -9.93 16 7 C -0.36 -8.33 9.05 -14.93 -0.14 -8.46 16 8 H 0.11 2.62 7.24 -52.48 -0.38 2.24 16 9 C 0.07 1.68 5.27 -17.47 -0.09 1.58 16 10 N -0.84 -21.07 13.96 55.50 0.77 -20.29 16 11 Si 0.86 17.61 25.01 -169.99 -4.25 13.36 16 12 H -0.27 -5.22 6.71 56.52 0.38 -4.84 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.25 -5.14 7.11 56.52 0.40 -4.73 16 15 C 0.51 10.88 7.39 -10.99 -0.08 10.79 16 16 O -0.57 -13.22 15.56 5.54 0.09 -13.13 16 17 C -0.12 -2.07 3.51 36.01 0.13 -1.94 16 18 S -0.02 -0.38 21.06 -107.50 -2.26 -2.65 16 19 C -0.08 -1.03 6.11 -39.07 -0.24 -1.27 16 20 C -0.12 -1.46 9.36 -39.36 -0.37 -1.83 16 21 C -0.10 -1.14 10.01 -39.56 -0.40 -1.53 16 22 C 0.05 0.60 7.30 -39.35 -0.29 0.32 16 23 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 24 C 0.09 1.10 7.30 -39.40 -0.29 0.81 16 25 F -0.13 -1.69 17.18 2.25 0.04 -1.66 16 26 C -0.11 -1.43 9.77 -39.31 -0.38 -1.81 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 2.25 3.67 -51.93 -0.19 2.06 16 31 H 0.11 2.11 7.64 -51.93 -0.40 1.72 16 32 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.12 1.92 7.27 -51.92 -0.38 1.54 16 34 H 0.12 1.92 7.70 -51.92 -0.40 1.52 16 35 H 0.15 1.73 5.87 -52.49 -0.31 1.43 16 36 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -28.62 345.51 -5.42 -34.04 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.32 Total: 5.24 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.81 Total: 10.13 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.57 Total: -30.22 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.63 Total: -31.77 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -4.25 Total: 13.36 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.26 Total: -2.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.62 -5.42 -34.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120491296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.932 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds