Wall clock time and date at job start Wed Apr 1 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00258 * 2 1 4 4 O 1.20828 * 119.99676 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00475 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47228 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99693 * 263.10019 * 6 5 3 8 8 H 1.08005 * 119.99707 * 142.06172 * 7 6 5 9 9 C 1.38946 * 120.00501 * 322.05824 * 7 6 5 10 10 N 1.31410 * 120.00256 * 158.25757 * 9 7 6 11 11 Si 1.86803 * 119.99882 * 338.26447 * 9 7 6 12 12 H 1.48510 * 109.46902 * 95.91006 * 11 9 7 13 13 H 1.48499 * 109.47233 * 215.91096 * 11 9 7 14 14 H 1.48501 * 109.47172 * 335.91518 * 11 9 7 15 15 C 1.34774 * 120.00349 * 83.10710 * 6 5 3 16 16 O 1.21298 * 119.99742 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00305 * 180.02562 * 15 6 5 18 18 S 1.81398 * 109.47256 * 179.97438 * 17 15 6 19 19 C 1.76200 * 103.00117 * 179.97438 * 18 17 15 20 20 C 1.38964 * 120.04406 * 0.02630 * 19 18 17 21 21 C 1.38108 * 119.98716 * 179.97438 * 20 19 18 22 22 C 1.38434 * 120.08208 * 359.97438 * 21 20 19 23 23 F 1.35097 * 119.95580 * 180.28015 * 22 21 20 24 24 C 1.38673 * 120.08953 * 0.02562 * 22 21 20 25 25 F 1.35097 * 119.99680 * 180.02562 * 24 22 21 26 26 C 1.38307 * 120.00952 * 359.97438 * 24 22 21 27 27 H 1.08994 * 109.47617 * 300.00606 * 1 2 3 28 28 H 1.09004 * 109.46808 * 60.00726 * 1 2 3 29 29 H 1.09007 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46679 * 59.99510 * 5 3 2 31 31 H 1.08999 * 109.46914 * 300.00260 * 5 3 2 32 32 H 0.97000 * 119.99964 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47363 * 59.99176 * 17 15 6 34 34 H 1.08999 * 109.46848 * 299.99518 * 17 15 6 35 35 H 1.07998 * 120.00058 * 359.97375 * 20 19 18 36 36 H 1.08004 * 119.95635 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.04062 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6796 0.0011 7 6 4.3132 3.2968 -1.1774 8 1 4.0349 4.3269 -1.3445 9 6 5.0074 2.5972 -2.1568 10 7 4.9608 2.9971 -3.4078 11 14 6.0068 1.0880 -1.6954 12 1 5.1944 -0.1335 -1.9270 13 1 7.2335 1.0323 -2.5305 14 1 6.3869 1.1652 -0.2620 15 6 4.0380 3.3654 1.1600 16 8 3.7443 2.8194 2.2026 17 6 4.4647 4.8107 1.1604 18 16 4.4381 5.4485 2.8583 19 6 4.9575 7.1207 2.6618 20 6 5.2621 7.6106 1.3975 21 6 5.6686 8.9217 1.2448 22 6 5.7726 9.7491 2.3497 23 9 6.1651 11.0327 2.1966 24 6 5.4695 9.2637 3.6128 25 9 5.5713 10.0729 4.6898 26 6 5.0621 7.9514 3.7701 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7804 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.4457 2.5089 -4.0914 33 1 3.7795 5.3920 0.5434 34 1 5.4742 4.8916 0.7573 35 1 5.1809 6.9662 0.5347 36 1 5.9047 9.3020 0.2619 37 1 4.8263 7.5727 4.7537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120491296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:32 Heat of formation + Delta-G solvation = -175.626506 kcal Electronic energy + Delta-G solvation = -27005.164297 eV Core-core repulsion = 22510.577660 eV Total energy + Delta-G solvation = -4494.586637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.55392 -49.62802 -41.75718 -40.44924 -39.80476 -37.60962 -36.82398 -34.08096 -32.43895 -32.02035 -31.31725 -29.67961 -27.82015 -26.74074 -24.50802 -23.98075 -22.66350 -21.21224 -19.81233 -19.23324 -18.92625 -18.58547 -18.38071 -18.14363 -17.49688 -17.39549 -17.31688 -17.12872 -16.79939 -16.34685 -16.04932 -15.81521 -15.51130 -15.15432 -15.05645 -14.79786 -14.64274 -14.53552 -14.29356 -14.06842 -13.89742 -13.51284 -13.30568 -13.14446 -12.99131 -12.89661 -12.53290 -12.40526 -11.97834 -11.82854 -11.72763 -11.27687 -11.25124 -10.78344 -10.70398 -10.11831 -10.00384 -8.57405 -8.49966 -6.25686 -0.31264 -0.10781 0.19025 1.11484 1.19226 1.26016 1.31343 1.43168 1.48862 1.87092 2.14661 2.16927 2.44510 2.73062 2.88987 3.22763 3.49582 3.75829 3.83295 3.88630 3.95469 3.97028 4.09274 4.17988 4.29953 4.30169 4.36178 4.43616 4.64483 4.65565 4.76305 4.87709 4.96504 5.14372 5.28174 5.58645 5.94218 6.06844 6.68820 6.80049 7.15142 7.50226 8.55257 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.002975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.465509 B = 9409.460895 C =10534.089122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.524 6.524 5 C 0.101 3.899 6 N -0.449 5.449 7 C -0.355 4.355 8 H 0.089 0.911 9 C 0.037 3.963 10 N -0.882 5.882 11 Si 0.908 3.092 12 H -0.250 1.250 13 H -0.277 1.277 14 H -0.250 1.250 15 C 0.503 3.497 16 O -0.593 6.593 17 C -0.114 4.114 18 S -0.042 6.042 19 C -0.081 4.081 20 C -0.118 4.118 21 C -0.091 4.091 22 C 0.046 3.954 23 F -0.135 7.135 24 C 0.080 3.920 25 F -0.132 7.132 26 C -0.110 4.110 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.284 0.716 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 2.735 6.661 7.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.412 6.412 5 C -0.024 4.024 6 N -0.170 5.170 7 C -0.482 4.482 8 H 0.107 0.893 9 C -0.170 4.170 10 N -0.517 5.517 11 Si 0.731 3.269 12 H -0.176 1.176 13 H -0.203 1.203 14 H -0.173 1.173 15 C 0.293 3.707 16 O -0.478 6.478 17 C -0.264 4.264 18 S 0.203 5.797 19 C -0.195 4.195 20 C -0.142 4.142 21 C -0.111 4.111 22 C 0.023 3.977 23 F -0.114 7.114 24 C 0.058 3.942 25 F -0.111 7.111 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.157 2.055 7.951 8.214 hybrid contribution 0.508 0.689 -1.393 1.635 sum 0.351 2.744 6.558 7.118 Atomic orbital electron populations 1.23560 0.74820 1.05888 1.02221 1.86483 1.25173 1.32364 1.84043 1.24600 0.92872 0.81658 0.71488 1.90601 1.67301 1.37530 1.45796 1.21527 0.87492 0.87235 1.06109 1.43294 1.57986 1.09062 1.06689 1.18967 1.37487 0.99725 0.92018 0.89300 1.25883 0.96295 1.00635 0.94143 1.69822 1.38840 1.42217 1.00780 0.86396 0.79840 0.80277 0.80425 1.17564 1.20278 1.17344 1.19877 0.79640 0.88440 0.82787 1.90601 1.54149 1.71065 1.31962 1.23574 1.08384 0.96514 0.97944 1.86121 1.82182 1.01288 1.10065 1.21995 1.02392 0.98932 0.96218 1.21432 1.00004 0.96254 0.96540 1.21215 0.98491 0.92572 0.98870 1.17762 1.05981 0.80540 0.93420 1.91506 1.88734 1.34814 1.96317 1.17516 1.04913 0.89451 0.82335 1.91515 1.93983 1.72248 1.53322 1.20619 1.02189 0.90471 1.00215 0.92309 0.92391 0.84159 0.86667 0.85459 0.90569 0.86293 0.84813 0.83050 0.80849 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.90 16 2 O -0.36 -12.24 10.56 -51.34 -0.54 -12.78 16 3 C 0.45 18.50 7.98 71.24 0.57 19.07 16 4 O -0.52 -24.59 16.01 21.96 0.35 -24.24 16 5 C 0.10 4.08 4.49 85.63 0.38 4.47 16 6 N -0.45 -19.75 1.74 -639.60 -1.11 -20.86 16 7 C -0.36 -16.67 9.05 84.04 0.76 -15.91 16 8 H 0.09 4.42 7.24 -2.91 -0.02 4.40 16 9 C 0.04 1.74 5.27 84.93 0.45 2.19 16 10 N -0.88 -44.26 13.96 21.66 0.30 -43.96 16 11 Si 0.91 35.22 25.01 68.60 1.72 36.93 16 12 H -0.25 -8.97 6.71 99.48 0.67 -8.31 16 13 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 15 C 0.50 21.37 7.39 87.66 0.65 22.02 16 16 O -0.59 -27.22 15.56 -3.09 -0.05 -27.26 16 17 C -0.11 -3.91 3.51 71.24 0.25 -3.66 16 18 S -0.04 -1.32 21.06 -56.49 -1.19 -2.51 16 19 C -0.08 -2.09 6.11 22.60 0.14 -1.95 16 20 C -0.12 -2.74 9.36 22.41 0.21 -2.53 16 21 C -0.09 -1.89 10.01 22.29 0.22 -1.66 16 22 C 0.05 1.08 7.30 22.42 0.16 1.24 16 23 F -0.14 -3.30 17.18 44.97 0.77 -2.53 16 24 C 0.08 1.92 7.30 22.39 0.16 2.09 16 25 F -0.13 -3.31 17.18 44.97 0.77 -2.54 16 26 C -0.11 -2.59 9.77 22.44 0.22 -2.37 16 27 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 29 H 0.14 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.12 4.49 3.67 -2.39 -0.01 4.49 16 31 H 0.13 4.66 7.64 -2.39 -0.02 4.64 16 32 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 33 H 0.12 3.96 7.27 -2.39 -0.02 3.94 16 34 H 0.13 4.18 7.70 -2.39 -0.02 4.16 16 35 H 0.15 3.39 5.87 -2.91 -0.02 3.37 16 36 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -60.81 345.51 7.50 -53.31 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 1.11 Total: 21.54 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 5.37 Total: 24.89 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.81 Total: -64.82 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -0.24 Total: -64.28 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 1.54 Total: -5.07 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 1.72 Total: 36.93 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -1.19 Total: -2.51 kcal Total: -60.81 7.50 -53.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120491296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.314 kcal (2) G-P(sol) polarization free energy of solvation -60.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds