Wall clock time and date at job start Wed Apr 1 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47549 * 2 1 4 4 C 1.46503 * 119.99875 * 277.48782 * 3 2 1 5 5 C 1.50699 * 109.46695 * 269.99552 * 4 3 2 6 6 H 1.07998 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99657 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00350 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99826 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47026 * 119.99827 * 9 7 5 12 12 H 1.48502 * 109.47017 * 239.99480 * 9 7 5 13 13 C 1.34775 * 120.00121 * 97.47874 * 3 2 1 14 14 O 1.21561 * 120.00268 * 185.77125 * 13 3 2 15 15 C 1.47788 * 119.99695 * 5.77754 * 13 3 2 16 16 C 1.39632 * 120.12950 * 134.12392 * 15 13 3 17 17 C 1.37879 * 119.86652 * 179.97438 * 16 15 13 18 18 C 1.38526 * 120.13298 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.87030 * 179.97438 * 18 17 16 20 20 C 1.38491 * 120.26395 * 0.02562 * 18 17 16 21 21 S 1.76202 * 119.93470 * 179.97438 * 20 18 17 22 22 C 1.81405 * 104.44797 * 294.99394 * 21 20 18 23 23 O 1.42101 * 104.27672 * 178.92662 * 21 20 18 24 24 O 1.42098 * 104.28040 * 51.07029 * 21 20 18 25 25 C 1.37918 * 120.13253 * 0.22978 * 20 18 17 26 26 H 1.09005 * 109.47228 * 309.36240 * 1 2 3 27 27 H 1.09004 * 109.46807 * 69.35986 * 1 2 3 28 28 H 1.08997 * 109.47458 * 189.35759 * 1 2 3 29 29 H 1.09000 * 109.47183 * 239.99563 * 2 1 3 30 30 H 1.09000 * 109.47106 * 119.99988 * 2 1 3 31 31 H 1.08996 * 109.47261 * 29.99906 * 4 3 2 32 32 H 1.09002 * 109.46869 * 149.99990 * 4 3 2 33 33 H 0.96998 * 120.00391 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.06612 * 359.95180 * 16 15 13 35 35 H 1.08004 * 119.93138 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47313 * 300.00242 * 22 21 20 37 37 H 1.09006 * 109.46600 * 60.00252 * 22 21 20 38 38 H 1.08996 * 109.46702 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.07010 * 179.72690 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1067 2.1269 -1.2579 5 6 3.4652 1.9129 -1.8743 6 1 4.1903 1.2847 -1.3784 7 6 3.7826 2.5201 -3.0708 8 7 2.8998 3.2854 -3.6744 9 14 5.4668 2.2555 -3.8345 10 1 6.2697 1.3595 -2.9640 11 1 5.3106 1.6349 -5.1745 12 1 6.1589 3.5621 -3.9717 13 6 2.3863 1.9659 1.1572 14 8 2.6914 3.1425 1.1737 15 6 2.4189 1.1765 2.4062 16 6 3.5148 1.2706 3.2664 17 6 3.5393 0.5321 4.4305 18 6 2.4798 -0.3024 4.7471 19 17 2.5181 -1.2296 6.2142 20 6 1.3907 -0.4007 3.8974 21 16 0.0482 -1.4653 4.3083 22 6 0.7628 -3.1321 4.2653 23 8 -0.8758 -1.2914 3.2427 24 8 -0.2920 -1.1027 5.6394 25 6 1.3572 0.3291 2.7275 26 1 -0.3634 0.6518 0.7946 27 1 -0.3633 0.3623 -0.9618 28 1 -0.3634 -1.0139 0.1671 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3368 1.7744 -1.9441 32 1 1.9600 3.1890 -1.0617 33 1 3.1230 3.7123 -4.5164 34 1 4.3417 1.9203 3.0203 35 1 4.3862 0.6044 5.0969 36 1 1.1523 -3.3349 3.2677 37 1 1.5724 -3.1991 4.9922 38 1 -0.0069 -3.8638 4.5109 39 1 0.5093 0.2483 2.0635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121563451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:49 Heat of formation + Delta-G solvation = -64.925847 kcal Electronic energy + Delta-G solvation = -26266.609125 eV Core-core repulsion = 22328.619509 eV Total energy + Delta-G solvation = -3937.989616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35765 -38.43703 -37.41633 -36.85071 -36.18932 -35.60006 -32.99072 -31.79139 -31.30924 -30.17638 -29.85908 -27.31186 -24.31288 -23.64241 -23.11894 -22.42433 -19.91928 -18.79776 -17.80541 -17.07889 -16.69230 -16.49162 -16.42509 -16.14986 -15.69166 -15.18283 -14.81940 -14.54462 -14.22489 -14.04687 -13.61670 -13.49692 -13.33575 -13.22770 -12.78731 -12.49517 -12.32819 -12.27716 -12.19384 -11.99959 -11.86693 -11.75282 -11.57692 -11.29474 -11.23944 -10.97930 -10.88204 -10.76801 -10.64696 -10.22212 -9.74551 -9.71767 -9.32269 -8.98930 -8.50688 -7.82386 -6.11641 -4.17177 -0.28765 0.31487 0.70881 1.44321 2.48817 2.76483 3.24616 3.31474 3.33993 3.41446 3.51585 3.70425 3.89316 4.28409 4.37151 4.41663 4.59553 4.69999 4.79597 4.94284 5.08312 5.22977 5.23353 5.28256 5.33722 5.43977 5.55448 5.70077 5.72322 5.97478 6.06070 6.19216 6.26020 6.50348 6.95683 7.34124 7.40461 7.83837 8.13679 8.21280 8.72756 8.90522 9.48119 10.96518 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.003306 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.096485 B = 8468.481165 C = 9184.324137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 N -0.584 5.584 4 C 0.244 3.756 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.545 3.455 14 O -0.529 6.529 15 C -0.123 4.123 16 C -0.008 4.008 17 C -0.129 4.129 18 C 0.053 3.947 19 Cl -0.049 7.049 20 C -0.663 4.663 21 S 2.493 3.507 22 C -0.652 4.652 23 O -0.929 6.929 24 O -0.921 6.921 25 C 0.000 4.000 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 -15.057 17.217 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 N -0.315 5.315 4 C 0.126 3.874 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.331 3.669 14 O -0.406 6.406 15 C -0.127 4.127 16 C -0.027 4.027 17 C -0.148 4.148 18 C 0.025 3.975 19 Cl -0.020 7.020 20 C -0.748 4.748 21 S 2.671 3.329 22 C -0.803 4.803 23 O -0.926 6.926 24 O -0.918 6.918 25 C -0.019 4.019 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.470 -14.130 17.320 22.621 hybrid contribution 1.927 -0.330 -0.564 2.034 sum -1.543 -14.460 16.756 22.187 Atomic orbital electron populations 1.22387 0.95909 1.02465 1.02962 1.21749 0.94214 0.84197 1.02999 1.48241 1.61349 1.13440 1.08431 1.19385 0.97304 0.92891 0.77869 1.21439 0.99369 1.30187 1.05943 0.92350 1.24930 0.97382 0.94817 0.96858 1.69935 1.34487 1.31174 1.17439 0.86437 0.83914 0.78068 0.78945 1.19835 1.20889 1.20832 1.17993 0.79100 0.86934 0.82894 1.90792 1.48910 1.15294 1.85636 1.20580 0.95899 0.98632 0.97583 1.21555 0.96876 0.93703 0.90583 1.21117 0.98424 0.97046 0.98225 1.20588 0.94714 0.94789 0.87400 1.98422 1.98204 1.71116 1.34257 1.30422 1.18076 1.21760 1.04578 1.05526 0.74751 0.77461 0.75190 1.30293 1.14761 1.22585 1.12617 1.93601 1.57852 1.85072 1.56061 1.93635 1.80953 1.81276 1.35985 1.21848 0.98306 0.89069 0.92640 0.92173 0.91259 0.91005 0.89482 0.91383 0.94440 0.93449 0.92648 0.83159 0.83383 0.84457 0.84971 0.84551 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.14 37.16 0.34 -2.16 16 2 C 0.09 1.45 5.60 -4.04 -0.02 1.43 16 3 N -0.58 -12.03 2.46 -176.20 -0.43 -12.47 16 4 C 0.24 6.18 5.22 -5.19 -0.03 6.15 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.55 11.23 7.27 -12.36 -0.09 11.14 16 14 O -0.53 -13.03 16.55 5.31 0.09 -12.94 16 15 C -0.12 -1.94 5.08 -104.97 -0.53 -2.47 16 16 C -0.01 -0.11 9.70 -39.19 -0.38 -0.49 16 17 C -0.13 -1.38 9.81 -39.61 -0.39 -1.77 16 18 C 0.05 0.58 6.29 -39.38 -0.25 0.33 16 19 Cl -0.05 -0.46 24.79 -51.86 -1.29 -1.75 16 20 C -0.66 -7.72 5.58 -39.61 -0.22 -7.94 16 21 S 2.49 24.83 5.23 -107.50 -0.56 24.27 16 22 C -0.65 -3.56 10.60 101.05 1.07 -2.48 16 23 O -0.93 -11.38 16.73 -57.54 -0.96 -12.35 16 24 O -0.92 -11.51 16.45 -57.54 -0.95 -12.46 16 25 C 0.00 0.00 6.86 -39.19 -0.27 -0.27 16 26 H 0.06 0.86 6.33 -51.93 -0.33 0.53 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 30 H 0.07 0.90 5.09 -51.93 -0.26 0.64 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.15 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.14 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.13 0.65 6.29 -51.92 -0.33 0.33 16 38 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.17 2.34 2.83 -52.49 -0.15 2.19 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -35.24 351.23 -8.65 -43.89 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.37 Total: -0.86 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.19 Total: -11.72 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.30 Total: -37.59 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.82 Total: -37.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 24.83 SS G_CDS: -0.56 Total: 24.27 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.29 Total: -1.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.24 -8.65 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121563451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds