Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47549 * 2 1 4 4 C 1.46503 * 119.99875 * 277.48782 * 3 2 1 5 5 C 1.50699 * 109.46695 * 269.99552 * 4 3 2 6 6 H 1.07998 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99657 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00350 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99826 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47026 * 119.99827 * 9 7 5 12 12 H 1.48502 * 109.47017 * 239.99480 * 9 7 5 13 13 C 1.34775 * 120.00121 * 97.47874 * 3 2 1 14 14 O 1.21561 * 120.00268 * 185.77125 * 13 3 2 15 15 C 1.47788 * 119.99695 * 5.77754 * 13 3 2 16 16 C 1.39632 * 120.12950 * 134.12392 * 15 13 3 17 17 C 1.37879 * 119.86652 * 179.97438 * 16 15 13 18 18 C 1.38526 * 120.13298 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.87030 * 179.97438 * 18 17 16 20 20 C 1.38491 * 120.26395 * 0.02562 * 18 17 16 21 21 S 1.76202 * 119.93470 * 179.97438 * 20 18 17 22 22 C 1.81405 * 104.44797 * 294.99394 * 21 20 18 23 23 O 1.42101 * 104.27672 * 178.92662 * 21 20 18 24 24 O 1.42098 * 104.28040 * 51.07029 * 21 20 18 25 25 C 1.37918 * 120.13253 * 0.22978 * 20 18 17 26 26 H 1.09005 * 109.47228 * 309.36240 * 1 2 3 27 27 H 1.09004 * 109.46807 * 69.35986 * 1 2 3 28 28 H 1.08997 * 109.47458 * 189.35759 * 1 2 3 29 29 H 1.09000 * 109.47183 * 239.99563 * 2 1 3 30 30 H 1.09000 * 109.47106 * 119.99988 * 2 1 3 31 31 H 1.08996 * 109.47261 * 29.99906 * 4 3 2 32 32 H 1.09002 * 109.46869 * 149.99990 * 4 3 2 33 33 H 0.96998 * 120.00391 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.06612 * 359.95180 * 16 15 13 35 35 H 1.08004 * 119.93138 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47313 * 300.00242 * 22 21 20 37 37 H 1.09006 * 109.46600 * 60.00252 * 22 21 20 38 38 H 1.08996 * 109.46702 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.07010 * 179.72690 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1067 2.1269 -1.2579 5 6 3.4652 1.9129 -1.8743 6 1 4.1903 1.2847 -1.3784 7 6 3.7826 2.5201 -3.0708 8 7 2.8998 3.2854 -3.6744 9 14 5.4668 2.2555 -3.8345 10 1 6.2697 1.3595 -2.9640 11 1 5.3106 1.6349 -5.1745 12 1 6.1589 3.5621 -3.9717 13 6 2.3863 1.9659 1.1572 14 8 2.6914 3.1425 1.1737 15 6 2.4189 1.1765 2.4062 16 6 3.5148 1.2706 3.2664 17 6 3.5393 0.5321 4.4305 18 6 2.4798 -0.3024 4.7471 19 17 2.5181 -1.2296 6.2142 20 6 1.3907 -0.4007 3.8974 21 16 0.0482 -1.4653 4.3083 22 6 0.7628 -3.1321 4.2653 23 8 -0.8758 -1.2914 3.2427 24 8 -0.2920 -1.1027 5.6394 25 6 1.3572 0.3291 2.7275 26 1 -0.3634 0.6518 0.7946 27 1 -0.3633 0.3623 -0.9618 28 1 -0.3634 -1.0139 0.1671 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3368 1.7744 -1.9441 32 1 1.9600 3.1890 -1.0617 33 1 3.1230 3.7123 -4.5164 34 1 4.3417 1.9203 3.0203 35 1 4.3862 0.6044 5.0969 36 1 1.1523 -3.3349 3.2677 37 1 1.5724 -3.1991 4.9922 38 1 -0.0069 -3.8638 4.5109 39 1 0.5093 0.2483 2.0635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121563451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = -89.989125 kcal Electronic energy + Delta-G solvation = -26267.695950 eV Core-core repulsion = 22328.619509 eV Total energy + Delta-G solvation = -3939.076441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64840 -39.71050 -38.28630 -37.72506 -37.23585 -37.01010 -34.99314 -32.82278 -32.55870 -31.55331 -30.35607 -29.18328 -25.85466 -24.63971 -24.59422 -23.82172 -21.13331 -19.77458 -18.98605 -18.61861 -18.25393 -17.67130 -17.29964 -17.15590 -17.11659 -16.40875 -16.22790 -15.92134 -15.58650 -15.02154 -14.83548 -14.43918 -14.29335 -14.07799 -14.01789 -13.84038 -13.62171 -13.34348 -13.26279 -13.15839 -13.11784 -13.03040 -12.76549 -12.67290 -12.61111 -12.45788 -12.19838 -12.00462 -11.95867 -11.74031 -11.71194 -10.93252 -10.69705 -10.66297 -10.06657 -9.57976 -8.24197 -6.39325 -1.00215 -0.68148 -0.29575 0.57429 1.37015 1.39140 1.48983 1.52631 1.71924 2.01712 2.28946 2.39364 2.78042 3.05684 3.08439 3.37709 3.48175 3.76311 3.88628 4.01114 4.08072 4.09706 4.21900 4.26776 4.35936 4.52155 4.53679 4.68976 4.84278 4.90206 4.93164 4.99070 5.03631 5.19178 5.26831 5.36595 5.51145 5.76648 6.01917 6.55452 6.69563 7.13744 7.33481 8.83738 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.003306 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.096485 B = 8468.481165 C = 9184.324137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 N -0.589 5.589 4 C 0.259 3.741 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.539 3.461 14 O -0.585 6.585 15 C -0.145 4.145 16 C -0.014 4.014 17 C -0.115 4.115 18 C 0.057 3.943 19 Cl -0.026 7.026 20 C -0.660 4.660 21 S 2.487 3.513 22 C -0.626 4.626 23 O -0.958 6.958 24 O -0.952 6.952 25 C -0.004 4.004 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.001 0.999 33 H 0.268 0.732 34 H 0.149 0.851 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -18.652 18.999 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.035 4.035 3 N -0.319 5.319 4 C 0.138 3.862 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.328 3.672 14 O -0.467 6.467 15 C -0.149 4.149 16 C -0.033 4.033 17 C -0.134 4.134 18 C 0.029 3.971 19 Cl 0.004 6.996 20 C -0.744 4.744 21 S 2.667 3.333 22 C -0.780 4.780 23 O -0.955 6.955 24 O -0.950 6.950 25 C -0.023 4.023 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.285 -17.725 19.116 26.169 hybrid contribution 1.501 0.673 -0.975 1.912 sum -0.784 -17.052 18.141 24.909 Atomic orbital electron populations 1.22363 0.94449 1.04390 1.02009 1.22063 0.95415 0.81605 1.04447 1.48229 1.61488 1.15063 1.07096 1.18843 0.96548 0.90959 0.79809 1.21700 1.00022 1.30268 1.06313 0.92475 1.25863 1.01472 0.94313 0.97353 1.70059 1.36651 1.32016 1.17953 0.85335 0.78813 0.78013 0.78434 1.18857 1.19484 1.20836 1.18742 0.77528 0.86687 0.84265 1.90738 1.51348 1.17851 1.86783 1.20165 0.98358 1.00209 0.96194 1.21623 0.96195 0.94312 0.91199 1.21402 0.99292 0.95440 0.97220 1.20760 0.94203 0.94349 0.87766 1.98437 1.98112 1.70364 1.32717 1.30686 1.18697 1.21489 1.03483 1.05721 0.74385 0.79230 0.73993 1.30132 1.15660 1.17429 1.14812 1.93564 1.59089 1.86306 1.56538 1.93599 1.81516 1.82939 1.36898 1.21729 0.97554 0.89219 0.93822 0.92810 0.92601 0.87517 0.89561 0.88329 0.95260 0.98104 0.92341 0.83301 0.79951 0.81883 0.83809 0.81474 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 9.14 71.98 0.66 -4.19 16 2 C 0.09 2.74 5.60 86.38 0.48 3.23 16 3 N -0.59 -25.51 2.46 -829.64 -2.04 -27.56 16 4 C 0.26 13.97 5.22 85.63 0.45 14.42 16 5 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.52 5.46 84.66 0.46 0.99 16 8 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 9 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 C 0.54 23.48 7.27 86.77 0.63 24.11 16 14 O -0.59 -31.05 16.55 -3.91 -0.06 -31.12 16 15 C -0.15 -4.66 5.08 -20.09 -0.10 -4.76 16 16 C -0.01 -0.37 9.70 22.52 0.22 -0.15 16 17 C -0.11 -2.16 9.81 22.25 0.22 -1.94 16 18 C 0.06 1.09 6.29 22.40 0.14 1.23 16 19 Cl -0.03 -0.39 24.79 -2.72 -0.07 -0.46 16 20 C -0.66 -14.02 5.58 22.25 0.12 -13.89 16 21 S 2.49 43.33 5.23 -56.49 -0.30 43.04 16 22 C -0.63 -3.68 10.60 113.37 1.20 -2.48 16 23 O -0.96 -21.93 16.73 -127.65 -2.14 -24.06 16 24 O -0.95 -21.94 16.45 -127.65 -2.10 -24.04 16 25 C 0.00 -0.12 6.86 22.52 0.15 0.03 16 26 H 0.05 1.57 6.33 -2.38 -0.02 1.55 16 27 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.73 8.13 -2.39 -0.02 2.71 16 30 H 0.10 2.51 5.09 -2.39 -0.01 2.50 16 31 H 0.03 1.59 8.07 -2.39 -0.02 1.58 16 32 H 0.00 0.05 7.35 -2.39 -0.02 0.03 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.14 0.64 6.29 -2.39 -0.02 0.63 16 38 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.17 4.56 2.83 -2.91 -0.01 4.55 16 Total: -1.00 -81.73 351.23 1.58 -80.15 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.10 Total: 7.36 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.88 Total: -14.03 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.76 Total: -82.80 kcal Atomic # 8 Polarization: -74.92 SS G_CDS: -4.30 Total: -79.22 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 43.33 SS G_CDS: -0.30 Total: 43.04 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.07 Total: -0.46 kcal Total: -81.73 1.58 -80.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121563451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.844 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds