Wall clock time and date at job start Wed Apr 1 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47583 * 2 1 4 4 C 1.50706 * 109.47114 * 239.99814 * 2 1 3 5 5 H 1.07996 * 119.99840 * 240.00069 * 4 2 1 6 6 C 1.37874 * 119.99804 * 60.00008 * 4 2 1 7 7 N 1.31509 * 120.00019 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99848 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47021 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46912 * 119.99984 * 8 6 4 11 11 H 1.48498 * 109.47099 * 240.00034 * 8 6 4 12 12 N 1.46500 * 109.47155 * 120.00147 * 2 1 3 13 13 S 1.65608 * 119.99784 * 264.99883 * 12 2 1 14 14 O 1.42103 * 106.39953 * 311.46063 * 13 12 2 15 15 O 1.42098 * 106.40195 * 178.53759 * 13 12 2 16 16 C 1.76201 * 107.21595 * 64.99694 * 13 12 2 17 17 C 1.38380 * 120.11432 * 269.97557 * 16 13 12 18 18 C 1.37730 * 119.99981 * 180.02562 * 17 16 13 19 19 C 1.38872 * 120.79304 * 359.58197 * 18 17 16 20 20 C 1.39340 * 118.87756 * 0.64160 * 19 18 17 21 21 Cl 1.73599 * 119.89473 * 179.54925 * 20 19 18 22 22 C 1.38069 * 120.21925 * 359.56599 * 20 19 18 23 23 O 1.36165 * 111.23619 * 180.68885 * 19 18 17 24 24 C 1.43771 * 109.22627 * 340.94383 * 23 19 18 25 25 H 1.08999 * 110.75275 * 146.08505 * 24 23 19 26 26 C 1.53005 * 110.74819 * 269.43571 * 24 23 19 27 27 C 1.51642 * 132.16516 * 179.03488 * 18 17 16 28 28 H 1.08998 * 109.46785 * 59.99859 * 1 2 3 29 29 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47029 * 300.00329 * 1 2 3 31 31 H 0.97006 * 119.99738 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00239 * 84.99723 * 12 2 1 33 33 H 1.07998 * 119.99874 * 0.02562 * 17 16 13 34 34 H 1.07996 * 119.83515 * 180.02562 * 22 20 19 35 35 H 1.08997 * 109.47060 * 58.54620 * 26 24 23 36 36 H 1.08997 * 109.47319 * 178.54410 * 26 24 23 37 37 H 1.08998 * 109.46889 * 298.54927 * 26 24 23 38 38 H 1.09002 * 110.94150 * 314.00706 * 27 18 17 39 39 H 1.08995 * 110.94456 * 77.69022 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1961 13 16 2.4122 0.1772 2.5505 14 8 3.2437 1.2443 2.1155 15 8 2.8124 -0.7697 3.5315 16 6 0.9275 0.9148 3.1473 17 6 0.5493 2.1702 2.7048 18 6 -0.6114 2.7448 3.1732 19 6 -1.4190 2.0754 4.0833 20 6 -1.0293 0.8137 4.5281 21 17 -2.0130 -0.0416 5.6746 22 6 0.1369 0.2416 4.0602 23 8 -2.5189 2.8123 4.4019 24 6 -2.2812 4.1888 4.0619 25 1 -3.2017 4.6692 3.7302 26 6 -1.6712 4.9420 5.2458 27 6 -1.2675 4.0840 2.8980 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7089 1.1613 -3.4845 32 1 2.1109 -1.6562 1.1949 33 1 1.1644 2.6994 1.9920 34 1 0.4329 -0.7368 4.4087 35 1 -0.7365 4.4635 5.5381 36 1 -1.4760 5.9749 4.9577 37 1 -2.3665 4.9240 6.0850 38 1 -0.5374 4.8921 2.9433 39 1 -1.7790 4.0767 1.9355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128026221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:35 Heat of formation + Delta-G solvation = -92.193581 kcal Electronic energy + Delta-G solvation = -26392.612778 eV Core-core repulsion = 22453.440744 eV Total energy + Delta-G solvation = -3939.172034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54240 -37.96153 -36.79893 -36.48014 -35.48843 -35.36692 -33.32374 -32.23191 -31.18394 -30.30522 -28.34953 -27.17138 -25.28730 -23.43884 -22.31734 -21.86736 -21.00408 -19.02595 -17.72146 -17.64027 -17.22164 -16.78671 -16.31867 -16.05688 -15.28665 -14.91116 -14.65627 -14.49903 -14.02672 -13.68854 -13.60110 -13.34421 -13.13179 -12.73242 -12.61282 -12.48187 -12.25192 -11.86045 -11.77123 -11.74416 -11.62530 -11.52412 -11.40708 -11.32191 -11.11224 -11.06491 -11.01025 -10.70215 -10.56752 -10.38031 -10.13907 -9.25887 -8.90730 -8.70798 -8.58273 -8.32972 -6.17233 -4.23897 0.62378 0.98516 0.98947 2.01055 2.80038 3.14247 3.23346 3.31729 3.35532 3.70481 4.07636 4.20902 4.23261 4.33599 4.53494 4.60667 4.78694 4.89520 5.04156 5.09574 5.16324 5.20971 5.40252 5.45820 5.47894 5.56193 5.71050 5.78064 5.95577 5.97928 6.25890 6.27840 6.71664 6.73869 6.77599 6.95153 7.51812 7.61838 7.80382 7.95613 8.21549 8.78975 9.42310 10.89076 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.003815 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.115999 B = 7338.191906 C = 8079.095238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.267 3.733 3 H 0.051 0.949 4 C -0.520 4.520 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -1.096 6.096 13 S 2.694 3.306 14 O -0.957 6.957 15 O -0.978 6.978 16 C -0.684 4.684 17 C 0.043 3.957 18 C -0.182 4.182 19 C 0.165 3.835 20 C -0.079 4.079 21 Cl -0.061 7.061 22 C 0.023 3.977 23 O -0.286 6.286 24 C 0.074 3.926 25 H 0.122 0.878 26 C -0.172 4.172 27 C -0.105 4.105 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.411 0.589 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 6.476 13.293 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.560 4.560 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.858 5.858 13 S 2.780 3.220 14 O -0.947 6.947 15 O -0.968 6.968 16 C -0.768 4.768 17 C 0.024 3.976 18 C -0.183 4.183 19 C 0.117 3.883 20 C -0.107 4.107 21 Cl -0.032 7.032 22 C 0.003 3.997 23 O -0.199 6.199 24 C 0.018 3.982 25 H 0.140 0.860 26 C -0.230 4.230 27 C -0.142 4.142 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.245 0.755 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.602 6.786 13.747 16.692 hybrid contribution -0.676 -0.650 -0.876 1.284 sum -7.278 6.136 12.871 16.008 Atomic orbital electron populations 1.22311 0.98548 1.00160 1.00899 1.18649 0.90754 0.93114 0.81144 0.93096 1.21254 1.31812 1.13167 0.89721 0.91582 1.24901 0.94839 0.95010 0.99094 1.69863 1.36350 1.22668 1.23841 0.86387 0.78613 0.79642 0.82454 1.19637 1.20967 1.20847 1.55533 1.83731 1.19223 1.27337 1.01849 0.73612 0.73669 0.72844 1.93579 1.62912 1.56716 1.81500 1.93531 1.81162 1.61779 1.60324 1.31264 1.25879 1.06831 1.12841 1.20177 0.92652 0.91522 0.93280 1.20738 0.97854 0.98647 1.01107 1.19371 0.86301 0.91226 0.91365 1.20060 0.96252 0.93187 1.01168 1.98362 1.69707 1.76603 1.58502 1.20520 0.89325 0.98772 0.91037 1.86972 1.33077 1.19456 1.80418 1.23574 0.99958 0.80209 0.94431 0.86042 1.22268 1.01926 1.00694 0.98087 1.21923 0.97951 0.94605 0.99710 0.88775 0.94621 0.96861 0.92644 0.75489 0.83102 0.82606 0.91718 0.90250 0.91165 0.88169 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.29 37.16 0.35 -3.15 16 2 C 0.27 6.15 2.89 -69.08 -0.20 5.95 16 3 H 0.05 1.26 7.50 -51.93 -0.39 0.88 16 4 C -0.52 -13.27 8.76 -34.44 -0.30 -13.57 16 5 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.59 11.32 55.43 0.63 -22.96 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -1.10 -21.23 5.46 -5.88 -0.03 -21.27 16 13 S 2.69 49.00 5.72 -107.50 -0.62 48.39 16 14 O -0.96 -19.98 16.63 -57.17 -0.95 -20.93 16 15 O -0.98 -18.49 17.29 -57.17 -0.99 -19.48 16 16 C -0.68 -11.07 5.07 -39.52 -0.20 -11.27 16 17 C 0.04 0.66 8.57 -39.71 -0.34 0.32 16 18 C -0.18 -2.49 6.26 -104.11 -0.65 -3.14 16 19 C 0.16 2.34 6.74 -38.94 -0.26 2.08 16 20 C -0.08 -1.15 6.34 -39.23 -0.25 -1.40 16 21 Cl -0.06 -0.80 28.94 -51.86 -1.50 -2.30 16 22 C 0.02 0.35 9.28 -39.64 -0.37 -0.02 16 23 O -0.29 -3.65 10.81 -20.26 -0.22 -3.87 16 24 C 0.07 0.67 4.32 -25.83 -0.11 0.56 16 25 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 26 C -0.17 -1.31 9.49 37.16 0.35 -0.96 16 27 C -0.10 -1.05 6.65 -26.52 -0.18 -1.23 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.25 6.17 -51.93 -0.32 -0.08 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.41 7.20 8.83 -34.48 -0.30 6.90 16 33 H 0.15 2.28 7.63 -52.49 -0.40 1.88 16 34 H 0.16 2.11 7.61 -52.49 -0.40 1.71 16 35 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.82 7.92 -51.93 -0.41 0.40 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -30.69 352.68 -10.26 -40.95 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.62 Total: 5.20 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.26 Total: -24.27 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.60 Total: -44.23 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -2.16 Total: -44.28 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 49.00 SS G_CDS: -0.62 Total: 48.39 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.69 -10.26 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128026221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.242 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds