Wall clock time and date at job start Wed Apr 1 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47211 * 2 1 4 4 O 1.42899 * 109.47175 * 239.99335 * 2 1 3 5 5 C 1.53002 * 109.46618 * 119.99621 * 2 1 3 6 6 H 1.09008 * 109.46975 * 59.99922 * 5 2 1 7 7 N 1.46496 * 109.46944 * 179.97438 * 5 2 1 8 8 C 1.34773 * 120.00234 * 275.00104 * 7 5 2 9 9 O 1.21567 * 120.00219 * 359.97438 * 8 7 5 10 10 C 1.47698 * 119.99978 * 180.02562 * 8 7 5 11 11 C 1.39659 * 120.15992 * 359.72019 * 10 8 7 12 12 C 1.37963 * 119.86141 * 179.79007 * 11 10 8 13 13 Cl 1.73602 * 119.90147 * 180.23470 * 12 11 10 14 14 C 1.38563 * 120.19517 * 0.47035 * 12 11 10 15 15 C 1.38192 * 120.32570 * 359.78216 * 14 12 11 16 16 C 1.38319 * 120.13032 * 359.97438 * 15 14 12 17 17 F 1.35100 * 120.09981 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47268 * 300.00211 * 5 2 1 19 19 O 1.21216 * 119.99925 * 240.00283 * 18 5 2 20 20 O 1.34313 * 120.00225 * 60.00028 * 18 5 2 21 21 C 1.34924 * 117.00019 * 180.02562 * 20 18 5 22 22 H 1.08004 * 119.99682 * 359.72874 * 21 20 18 23 23 C 1.38745 * 119.99953 * 179.97438 * 21 20 18 24 24 N 1.31444 * 120.00075 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00277 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 89.99209 * 25 23 21 27 27 H 1.48501 * 109.47293 * 209.99659 * 25 23 21 28 28 H 1.48498 * 109.47120 * 329.99708 * 25 23 21 29 29 H 1.08993 * 109.46885 * 300.00709 * 1 2 3 30 30 H 1.09001 * 109.46516 * 60.00543 * 1 2 3 31 31 H 1.08995 * 109.47211 * 179.97438 * 1 2 3 32 32 H 0.96696 * 114.00034 * 179.97438 * 4 2 1 33 33 H 0.97002 * 119.99467 * 95.00375 * 7 5 2 34 34 H 1.07994 * 120.06782 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.84148 * 179.76566 * 14 12 11 36 36 H 1.07997 * 119.93458 * 179.97438 * 15 14 12 37 37 H 0.97005 * 120.00050 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.6765 -1.7489 1.2494 7 7 3.5049 -0.7218 1.2491 8 6 4.1784 -1.6782 0.5797 9 8 3.5702 -2.5408 -0.0235 10 6 5.6553 -1.6791 0.5800 11 6 6.3575 -0.6870 1.2679 12 6 7.7371 -0.6962 1.2677 13 17 8.6108 0.5330 2.1275 14 6 8.4273 -1.6808 0.5792 15 6 7.7406 -2.6633 -0.1085 16 6 6.3574 -2.6698 -0.1131 17 9 5.6866 -3.6303 -0.7861 18 6 1.5376 -0.0108 2.4797 19 8 2.3252 0.4500 3.2776 20 8 0.2170 0.1120 2.6922 21 6 -0.1655 0.7594 3.8124 22 1 0.5783 1.1475 4.4926 23 6 -1.5145 0.9223 4.0931 24 7 -1.8873 1.5526 5.1847 25 14 -2.8010 0.2445 2.9206 26 1 -3.1423 -1.1471 3.3107 27 1 -4.0209 1.0891 2.9822 28 1 -2.2627 0.2526 1.5367 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 2.9704 -0.7116 -1.2330 33 1 3.9902 -0.0337 1.7308 34 1 5.8216 0.0835 1.8021 35 1 9.5073 -1.6804 0.5797 36 1 8.2849 -3.4274 -0.6434 37 1 -2.8304 1.6661 5.3812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140147980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:07 Heat of formation + Delta-G solvation = -199.117105 kcal Electronic energy + Delta-G solvation = -28055.216017 eV Core-core repulsion = 23545.194255 eV Total energy + Delta-G solvation = -4510.021762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05147 -42.10544 -41.06059 -39.80260 -38.36959 -37.65402 -37.45910 -35.60390 -34.56688 -33.31583 -32.15319 -31.42176 -28.92172 -27.34127 -25.30416 -23.84109 -23.50175 -22.14279 -21.60152 -20.29898 -19.92032 -18.98665 -18.68644 -18.11761 -18.07051 -17.17079 -16.97402 -16.91418 -16.82423 -16.54675 -16.08912 -15.83592 -15.58537 -14.99063 -14.90131 -14.58387 -14.50293 -14.40227 -14.32887 -14.03709 -13.70071 -13.38252 -13.09499 -12.97624 -12.75738 -12.61812 -12.42496 -12.36209 -12.20736 -12.13235 -11.70601 -11.48176 -11.35287 -11.29392 -10.82750 -10.52346 -10.31600 -9.77762 -8.57315 -6.44646 -0.63397 -0.19731 0.94861 1.10426 1.28509 1.40266 1.47120 1.50254 1.59075 2.19029 2.26414 2.34085 2.88874 2.93900 3.17631 3.24541 3.45354 3.51250 3.76662 3.82606 3.86893 4.05291 4.22867 4.25444 4.33006 4.50147 4.68448 4.82279 4.83783 4.89057 4.91958 4.98075 5.36441 5.41056 5.41821 5.84473 6.08778 6.37425 6.48007 6.77278 6.79206 7.43199 8.54307 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.003150 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.530031 B = 8885.625044 C =10189.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 H 0.074 0.926 4 O -0.549 6.549 5 C 0.140 3.860 6 H 0.121 0.879 7 N -0.704 5.704 8 C 0.558 3.442 9 O -0.536 6.536 10 C -0.175 4.175 11 C -0.049 4.049 12 C -0.060 4.060 13 Cl -0.051 7.051 14 C -0.036 4.036 15 C -0.136 4.136 16 C 0.150 3.850 17 F -0.125 7.125 18 C 0.412 3.588 19 O -0.556 6.556 20 O -0.232 6.232 21 C -0.407 4.407 22 H 0.064 0.936 23 C 0.025 3.975 24 N -0.911 5.911 25 Si 0.963 3.037 26 H -0.268 1.268 27 H -0.270 1.270 28 H -0.225 1.225 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.375 0.625 33 H 0.416 0.584 34 H 0.150 0.850 35 H 0.185 0.815 36 H 0.186 0.814 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.081 -5.504 -13.471 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.092 0.908 4 O -0.356 6.356 5 C 0.033 3.967 6 H 0.139 0.861 7 N -0.360 5.360 8 C 0.347 3.653 9 O -0.414 6.414 10 C -0.179 4.179 11 C -0.068 4.068 12 C -0.087 4.087 13 Cl -0.022 7.022 14 C -0.054 4.054 15 C -0.154 4.154 16 C 0.129 3.871 17 F -0.103 7.103 18 C 0.257 3.743 19 O -0.451 6.451 20 O -0.139 6.139 21 C -0.482 4.482 22 H 0.082 0.918 23 C -0.177 4.177 24 N -0.550 5.550 25 Si 0.782 3.218 26 H -0.193 1.193 27 H -0.195 1.195 28 H -0.148 1.148 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.224 0.776 33 H 0.256 0.744 34 H 0.167 0.833 35 H 0.202 0.798 36 H 0.203 0.797 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.065 -5.894 -13.601 24.947 hybrid contribution -0.007 0.393 0.971 1.048 sum 20.058 -5.501 -12.630 24.333 Atomic orbital electron populations 1.22146 0.91510 1.03997 1.04262 1.21994 0.96482 0.94486 0.82173 0.90813 1.86568 1.27088 1.80098 1.41820 1.21069 0.81711 1.02290 0.91638 0.86094 1.45683 1.05192 1.31491 1.53659 1.18300 0.87512 0.80689 0.78813 1.90916 1.69849 1.36908 1.43760 1.19694 0.91937 0.99937 1.06318 1.21203 0.93237 0.96705 0.95679 1.20919 0.91750 0.95022 1.00974 1.98420 1.75506 1.52871 1.75371 1.21531 1.02796 0.89809 0.91283 1.21457 0.90143 1.01769 1.02080 1.18078 0.91063 0.85883 0.92066 1.91597 1.80987 1.60728 1.76988 1.23342 0.81917 0.80911 0.88084 1.90592 1.56885 1.49472 1.48166 1.83586 1.23823 1.65500 1.41015 1.20351 0.93757 1.35823 0.98317 0.91766 1.25459 0.98765 0.95305 0.98128 1.69688 1.19143 1.40245 1.25894 0.85425 0.76989 0.78490 0.80856 1.19281 1.19527 1.14756 0.89630 0.89873 0.91593 0.77595 0.74445 0.83259 0.79802 0.79698 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 8.83 71.99 0.64 -4.64 16 2 C 0.11 3.43 3.41 30.60 0.10 3.53 16 3 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 4 O -0.55 -16.98 12.46 -132.33 -1.65 -18.63 16 5 C 0.14 4.83 2.49 44.25 0.11 4.94 16 6 H 0.12 4.36 7.58 -2.38 -0.02 4.34 16 7 N -0.70 -20.43 4.81 -449.13 -2.16 -22.59 16 8 C 0.56 15.66 6.37 86.74 0.55 16.21 16 9 O -0.54 -18.28 13.38 12.72 0.17 -18.11 16 10 C -0.17 -3.77 5.88 -20.05 -0.12 -3.89 16 11 C -0.05 -0.86 9.31 22.55 0.21 -0.65 16 12 C -0.06 -0.83 6.31 22.28 0.14 -0.69 16 13 Cl -0.05 -0.72 28.95 -2.72 -0.08 -0.80 16 14 C -0.04 -0.32 9.82 22.34 0.22 -0.10 16 15 C -0.14 -1.46 10.01 22.28 0.22 -1.24 16 16 C 0.15 2.90 7.28 22.67 0.17 3.06 16 17 F -0.12 -3.09 15.55 44.97 0.70 -2.39 16 18 C 0.41 18.12 7.20 71.23 0.51 18.63 16 19 O -0.56 -27.16 15.08 20.76 0.31 -26.85 16 20 O -0.23 -11.30 5.51 14.80 0.08 -11.22 16 21 C -0.41 -23.40 10.10 67.94 0.69 -22.71 16 22 H 0.06 4.21 7.09 -2.91 -0.02 4.19 16 23 C 0.02 1.36 5.49 84.87 0.47 1.83 16 24 N -0.91 -52.97 13.96 21.62 0.30 -52.67 16 25 Si 0.96 41.00 28.50 68.60 1.96 42.96 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.23 -8.67 5.60 99.48 0.56 -8.12 16 29 H 0.09 3.21 3.91 -2.39 -0.01 3.20 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.38 10.35 6.54 -74.06 -0.48 9.87 16 33 H 0.42 11.20 5.83 -92.71 -0.54 10.66 16 34 H 0.15 2.56 6.40 -2.91 -0.02 2.55 16 35 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.29 15.29 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -71.37 336.71 3.55 -67.82 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.00 Total: 28.20 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 3.91 Total: 14.29 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.86 Total: -75.26 kcal Atomic # 8 Polarization: -73.73 SS G_CDS: -1.08 Total: -74.82 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.70 Total: -2.39 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.96 Total: 42.96 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -71.37 3.55 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140147980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.293 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds