Wall clock time and date at job start Wed Apr 1 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34775 * 117.00596 * 179.97438 * 3 2 1 5 5 O 1.21530 * 119.99197 * 359.97438 * 4 3 2 6 6 C 1.47252 * 120.00269 * 180.02562 * 4 3 2 7 7 C 1.39856 * 120.16788 * 355.03469 * 6 4 3 8 8 C 1.37828 * 119.91480 * 179.97438 * 7 6 4 9 9 F 1.35102 * 119.87241 * 180.02562 * 8 7 6 10 10 C 1.39056 * 120.26290 * 359.97438 * 8 7 6 11 11 F 1.35102 * 119.83000 * 180.02562 * 10 8 7 12 12 C 1.38278 * 120.34457 * 0.04323 * 10 8 7 13 13 C 1.38729 * 120.08355 * 359.69883 * 12 10 8 14 14 N 1.39341 * 120.13960 * 180.30207 * 13 12 10 15 15 C 1.34785 * 119.99467 * 34.95011 * 14 13 12 16 16 O 1.21278 * 120.00117 * 5.27895 * 15 14 13 17 17 C 1.50699 * 119.99735 * 185.27176 * 15 14 13 18 18 S 1.80999 * 109.47292 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99891 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00332 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99608 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99409 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00123 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47653 * 89.99695 * 23 21 19 25 25 H 1.48502 * 109.46832 * 209.99731 * 23 21 19 26 26 H 1.48498 * 109.46892 * 329.99241 * 23 21 19 27 27 H 1.09000 * 109.47232 * 299.99802 * 1 2 3 28 28 H 1.08994 * 109.47188 * 60.00173 * 1 2 3 29 29 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 120.00308 * 2 1 3 31 31 H 1.09000 * 109.47232 * 240.00198 * 2 1 3 32 32 H 1.07998 * 120.04531 * 359.95527 * 7 6 4 33 33 H 1.08006 * 119.96362 * 179.97438 * 12 10 8 34 34 H 0.96988 * 120.00313 * 214.95197 * 14 13 12 35 35 H 1.09006 * 109.47365 * 300.00377 * 17 15 14 36 36 H 1.09005 * 109.46777 * 59.99953 * 17 15 14 37 37 H 0.97005 * 119.99562 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9130 2.9064 0.0011 7 6 3.0685 4.0162 -0.1035 8 6 3.6008 5.2876 -0.1019 9 9 2.7842 6.3591 -0.2025 10 6 4.9750 5.4718 0.0040 11 9 5.4874 6.7219 0.0052 12 6 5.8200 4.3821 0.1076 13 6 5.2992 3.0963 0.1128 14 7 6.1491 1.9976 0.2236 15 6 7.2596 2.0786 0.9831 16 8 7.4699 3.0724 1.6457 17 6 8.2397 0.9342 1.0092 18 16 9.6144 1.3422 2.1135 19 6 10.5782 -0.1246 1.9571 20 1 10.2422 -0.9256 1.3153 21 6 11.7692 -0.2504 2.6586 22 7 12.4889 -1.3464 2.5421 23 14 12.3500 1.1348 3.7691 24 1 11.8108 0.9313 5.1377 25 1 13.8342 1.1410 3.8177 26 1 11.8668 2.4332 3.2347 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0006 3.8774 -0.1858 33 1 6.8865 4.5323 0.1891 34 1 5.9415 1.1747 -0.2459 35 1 7.7392 0.0353 1.3693 36 1 8.6209 0.7594 0.0030 37 1 13.3211 -1.4346 3.0327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153381781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:25 Heat of formation + Delta-G solvation = -178.434259 kcal Electronic energy + Delta-G solvation = -26880.855422 eV Core-core repulsion = 22386.147032 eV Total energy + Delta-G solvation = -4494.708391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.79842 -48.86230 -41.41022 -40.15285 -38.40478 -37.02253 -34.76608 -32.49618 -32.48901 -31.37592 -30.74844 -28.64560 -25.69313 -25.20094 -24.07351 -23.07395 -21.65969 -20.88000 -18.84325 -18.69505 -17.99670 -17.81121 -17.22018 -17.04433 -16.77776 -16.60918 -16.25045 -15.58832 -15.35523 -15.26215 -15.03661 -14.61590 -14.56909 -14.17210 -14.07235 -13.80507 -13.61342 -13.51397 -13.16933 -12.89699 -12.83701 -12.41789 -12.22041 -12.05692 -12.03809 -11.33858 -11.06637 -11.05345 -10.96418 -10.73648 -10.51205 -9.98950 -9.86347 -9.46355 -9.06065 -8.61472 -8.56086 -7.01276 -6.34230 -4.07762 -0.07211 0.52068 1.91124 2.11362 2.46174 2.50851 3.01565 3.08068 3.28890 3.34867 3.45089 3.50491 3.83613 4.00591 4.21885 4.27228 4.47367 4.51876 4.52921 4.63626 4.75265 4.85925 5.04703 5.05112 5.09059 5.21938 5.25677 5.34825 5.41921 5.53559 5.59195 5.62513 5.87680 5.92396 6.04446 6.36082 7.16387 7.27995 7.88718 8.02384 8.36944 9.11243 10.74922 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002984 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.800165 B = 9381.176172 C =11554.524759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.351 6.351 4 C 0.523 3.477 5 O -0.502 6.502 6 C -0.156 4.156 7 C -0.044 4.044 8 C 0.030 3.970 9 F -0.125 7.125 10 C 0.136 3.864 11 F -0.115 7.115 12 C -0.151 4.151 13 C 0.256 3.744 14 N -0.666 5.666 15 C 0.532 3.468 16 O -0.493 6.493 17 C -0.124 4.124 18 S -0.137 6.137 19 C -0.523 4.523 20 H 0.090 0.910 21 C 0.097 3.903 22 N -0.878 5.878 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.235 1.235 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.429 0.571 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.911 7.576 -8.700 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.368 3.632 5 O -0.392 6.392 6 C -0.161 4.161 7 C -0.064 4.064 8 C 0.009 3.991 9 F -0.104 7.104 10 C 0.115 3.885 11 F -0.093 7.093 12 C -0.172 4.172 13 C 0.156 3.844 14 N -0.317 5.317 15 C 0.321 3.679 16 O -0.365 6.365 17 C -0.275 4.275 18 S 0.089 5.911 19 C -0.670 4.670 20 H 0.108 0.892 21 C -0.112 4.112 22 N -0.514 5.514 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.159 1.159 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.273 0.727 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.126 8.775 -7.547 26.758 hybrid contribution 0.080 -0.935 -0.435 1.034 sum -24.046 7.839 -7.981 26.521 Atomic orbital electron populations 1.21824 0.92325 1.03252 1.03633 1.23135 0.95480 0.79316 1.03191 1.86528 1.23023 1.33123 1.84084 1.20568 0.81007 0.88803 0.72791 1.90732 1.59875 1.42184 1.46367 1.18612 0.91271 0.90981 1.15232 1.21074 1.01475 0.88613 0.95194 1.17315 0.86346 0.84609 1.10863 1.91553 1.71409 1.53343 1.94065 1.17684 0.89923 0.80653 1.00270 1.91587 1.87178 1.37481 1.93099 1.21060 1.02549 0.89031 1.04542 1.17329 0.87396 0.87981 0.91730 1.44121 1.22955 1.15435 1.49222 1.20715 0.80517 0.89206 0.77509 1.90737 1.73889 1.32104 1.39737 1.23292 0.99034 0.98784 1.06352 1.84789 1.19844 1.27816 1.58607 1.22283 1.09010 1.01777 1.33968 0.89187 1.24710 0.95116 0.95782 0.95641 1.69937 1.14306 1.25989 1.41206 0.86742 0.79005 0.84099 0.82036 1.19161 1.19843 1.15925 0.91333 0.91378 0.89962 0.90700 0.90758 0.81816 0.81201 0.72693 0.87652 0.87588 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.43 6.20 37.16 0.23 0.66 16 3 O -0.35 -3.06 9.48 -40.70 -0.39 -3.45 16 4 C 0.52 5.52 7.87 34.39 0.27 5.79 16 5 O -0.50 -6.22 13.67 -19.29 -0.26 -6.48 16 6 C -0.16 -1.62 5.89 -104.83 -0.62 -2.24 16 7 C -0.04 -0.38 9.58 -39.13 -0.37 -0.76 16 8 C 0.03 0.30 7.29 -39.43 -0.29 0.01 16 9 F -0.13 -1.30 17.17 2.25 0.04 -1.27 16 10 C 0.14 1.56 7.30 -39.26 -0.29 1.27 16 11 F -0.12 -1.42 17.17 2.25 0.04 -1.38 16 12 C -0.15 -1.87 8.61 -39.39 -0.34 -2.21 16 13 C 0.26 3.14 6.25 -83.47 -0.52 2.62 16 14 N -0.67 -8.90 4.70 -9.68 -0.05 -8.94 16 15 C 0.53 8.96 7.57 -10.98 -0.08 8.87 16 16 O -0.49 -9.62 13.65 5.56 0.08 -9.54 16 17 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 18 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 19 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.13 13.97 55.49 0.78 -25.36 16 23 Si 0.86 21.35 27.74 -169.99 -4.72 16.63 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.16 1.02 7.62 -52.49 -0.40 0.62 16 33 H 0.17 2.33 6.53 -52.48 -0.34 1.99 16 34 H 0.43 5.18 6.29 -40.82 -0.26 4.92 16 35 H 0.11 1.85 8.14 -51.91 -0.42 1.42 16 36 H 0.11 1.79 8.14 -51.91 -0.42 1.36 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -32.32 349.35 -5.94 -38.25 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.53 Total: 1.66 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.19 Total: -0.07 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.73 Total: -34.30 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.57 Total: -19.47 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.32 -5.94 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153381781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.183 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds