Wall clock time and date at job start Wed Apr 1 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34775 * 117.00596 * 179.97438 * 3 2 1 5 5 O 1.21530 * 119.99197 * 359.97438 * 4 3 2 6 6 C 1.47252 * 120.00269 * 180.02562 * 4 3 2 7 7 C 1.39856 * 120.16788 * 355.03469 * 6 4 3 8 8 C 1.37828 * 119.91480 * 179.97438 * 7 6 4 9 9 F 1.35102 * 119.87241 * 180.02562 * 8 7 6 10 10 C 1.39056 * 120.26290 * 359.97438 * 8 7 6 11 11 F 1.35102 * 119.83000 * 180.02562 * 10 8 7 12 12 C 1.38278 * 120.34457 * 0.04323 * 10 8 7 13 13 C 1.38729 * 120.08355 * 359.69883 * 12 10 8 14 14 N 1.39341 * 120.13960 * 180.30207 * 13 12 10 15 15 C 1.34785 * 119.99467 * 34.95011 * 14 13 12 16 16 O 1.21278 * 120.00117 * 5.27895 * 15 14 13 17 17 C 1.50699 * 119.99735 * 185.27176 * 15 14 13 18 18 S 1.80999 * 109.47292 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99891 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00332 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99608 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99409 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00123 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47653 * 89.99695 * 23 21 19 25 25 H 1.48502 * 109.46832 * 209.99731 * 23 21 19 26 26 H 1.48498 * 109.46892 * 329.99241 * 23 21 19 27 27 H 1.09000 * 109.47232 * 299.99802 * 1 2 3 28 28 H 1.08994 * 109.47188 * 60.00173 * 1 2 3 29 29 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 120.00308 * 2 1 3 31 31 H 1.09000 * 109.47232 * 240.00198 * 2 1 3 32 32 H 1.07998 * 120.04531 * 359.95527 * 7 6 4 33 33 H 1.08006 * 119.96362 * 179.97438 * 12 10 8 34 34 H 0.96988 * 120.00313 * 214.95197 * 14 13 12 35 35 H 1.09006 * 109.47365 * 300.00377 * 17 15 14 36 36 H 1.09005 * 109.46777 * 59.99953 * 17 15 14 37 37 H 0.97005 * 119.99562 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9130 2.9064 0.0011 7 6 3.0685 4.0162 -0.1035 8 6 3.6008 5.2876 -0.1019 9 9 2.7842 6.3591 -0.2025 10 6 4.9750 5.4718 0.0040 11 9 5.4874 6.7219 0.0052 12 6 5.8200 4.3821 0.1076 13 6 5.2992 3.0963 0.1128 14 7 6.1491 1.9976 0.2236 15 6 7.2596 2.0786 0.9831 16 8 7.4699 3.0724 1.6457 17 6 8.2397 0.9342 1.0092 18 16 9.6144 1.3422 2.1135 19 6 10.5782 -0.1246 1.9571 20 1 10.2422 -0.9256 1.3153 21 6 11.7692 -0.2504 2.6586 22 7 12.4889 -1.3464 2.5421 23 14 12.3500 1.1348 3.7691 24 1 11.8108 0.9313 5.1377 25 1 13.8342 1.1410 3.8177 26 1 11.8668 2.4332 3.2347 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0006 3.8774 -0.1858 33 1 6.8865 4.5323 0.1891 34 1 5.9415 1.1747 -0.2459 35 1 7.7392 0.0353 1.3693 36 1 8.6209 0.7594 0.0030 37 1 13.3211 -1.4346 3.0327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153381781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:25 Heat of formation + Delta-G solvation = -197.562491 kcal Electronic energy + Delta-G solvation = -26881.684884 eV Core-core repulsion = 22386.147032 eV Total energy + Delta-G solvation = -4495.537853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.69522 -49.74468 -42.36593 -41.16290 -39.44284 -37.81547 -35.90760 -34.68682 -33.16175 -32.15313 -31.89484 -29.82874 -27.87748 -26.01166 -24.97321 -23.74030 -22.47811 -22.07612 -20.10311 -19.63127 -19.47414 -18.79829 -18.29544 -17.94155 -17.73617 -17.45370 -17.33774 -17.10433 -16.64110 -16.49833 -16.14873 -15.91723 -15.45829 -15.26123 -15.14227 -14.96748 -14.87744 -14.59934 -14.32175 -14.01122 -13.57496 -13.49256 -13.36351 -13.04026 -12.97136 -12.93470 -12.72320 -12.50342 -11.94442 -11.89218 -11.59585 -11.53017 -11.23847 -11.18471 -10.59757 -10.38205 -9.54137 -9.02870 -8.52813 -6.24634 -0.95964 -0.36174 0.87795 1.03160 1.26915 1.31257 1.37626 1.40592 1.49933 1.85972 2.16341 2.23299 2.46746 2.63510 2.85606 2.96225 3.14481 3.43144 3.48706 3.75450 3.93379 4.05738 4.08903 4.12760 4.21354 4.38784 4.39947 4.42052 4.54038 4.63833 4.84110 4.97489 4.99544 5.11952 5.36648 5.39013 5.69539 6.05560 6.11145 6.46004 6.77484 6.91896 8.59655 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002984 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.800165 B = 9381.176172 C =11554.524759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.344 6.344 4 C 0.525 3.475 5 O -0.523 6.523 6 C -0.147 4.147 7 C -0.021 4.021 8 C 0.039 3.961 9 F -0.123 7.123 10 C 0.130 3.870 11 F -0.123 7.123 12 C -0.157 4.157 13 C 0.237 3.763 14 N -0.652 5.652 15 C 0.541 3.459 16 O -0.524 6.524 17 C -0.113 4.113 18 S -0.162 6.162 19 C -0.531 4.531 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.234 1.234 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.197 0.803 33 H 0.153 0.847 34 H 0.435 0.565 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.526 8.425 -9.027 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.260 6.260 4 C 0.371 3.629 5 O -0.414 6.414 6 C -0.151 4.151 7 C -0.040 4.040 8 C 0.018 3.982 9 F -0.102 7.102 10 C 0.109 3.891 11 F -0.101 7.101 12 C -0.178 4.178 13 C 0.139 3.861 14 N -0.303 5.303 15 C 0.329 3.671 16 O -0.399 6.399 17 C -0.264 4.264 18 S 0.065 5.935 19 C -0.678 4.678 20 H 0.082 0.918 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.157 1.157 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.214 0.786 33 H 0.171 0.829 34 H 0.281 0.719 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.792 9.624 -7.904 29.545 hybrid contribution 0.665 -1.230 -0.451 1.469 sum -26.127 8.394 -8.354 28.686 Atomic orbital electron populations 1.21841 0.90247 1.04419 1.03961 1.23405 0.97065 0.78300 1.03122 1.86529 1.21668 1.34381 1.83467 1.20559 0.81580 0.88422 0.72308 1.90724 1.60511 1.42790 1.47402 1.18624 0.90471 0.91696 1.14322 1.21325 1.02688 0.87163 0.92786 1.17314 0.85615 0.85109 1.10112 1.91567 1.71189 1.53447 1.93967 1.17743 0.90539 0.80098 1.00729 1.91568 1.87427 1.37867 1.93228 1.20884 1.01966 0.89589 1.05374 1.17406 0.88032 0.87331 0.93382 1.43777 1.21976 1.16152 1.48429 1.20261 0.81051 0.88045 0.77734 1.90732 1.74814 1.32953 1.41392 1.23251 0.97388 1.00027 1.05687 1.84639 1.22028 1.26039 1.60841 1.22450 1.09656 1.02594 1.33115 0.91834 1.25568 0.95364 0.97991 0.97049 1.70019 1.15074 1.27832 1.42522 0.85876 0.79173 0.81246 0.80145 1.18729 1.18409 1.15745 0.91241 0.90764 0.88402 0.91254 0.90466 0.78569 0.82904 0.71870 0.86502 0.85841 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 71.98 0.74 -0.16 16 2 C 0.05 0.62 6.20 71.98 0.45 1.07 16 3 O -0.34 -5.04 9.48 -56.86 -0.54 -5.58 16 4 C 0.52 9.92 7.87 70.19 0.55 10.47 16 5 O -0.52 -12.13 13.67 19.74 0.27 -11.86 16 6 C -0.15 -2.71 5.89 -20.00 -0.12 -2.83 16 7 C -0.02 -0.29 9.58 22.56 0.22 -0.07 16 8 C 0.04 0.70 7.29 22.37 0.16 0.86 16 9 F -0.12 -2.23 17.17 44.97 0.77 -1.46 16 10 C 0.13 2.84 7.30 22.48 0.16 3.00 16 11 F -0.12 -2.94 17.17 44.97 0.77 -2.17 16 12 C -0.16 -3.83 8.61 22.40 0.19 -3.63 16 13 C 0.24 5.55 6.25 38.58 0.24 5.79 16 14 N -0.65 -16.84 4.70 -302.92 -1.42 -18.26 16 15 C 0.54 17.96 7.57 87.66 0.66 18.63 16 16 O -0.52 -20.48 13.65 -3.02 -0.04 -20.52 16 17 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 18 S -0.16 -7.90 18.55 -56.49 -1.05 -8.95 16 19 C -0.53 -30.34 10.04 67.96 0.68 -29.65 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.66 5.50 84.86 0.47 3.12 16 22 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 23 Si 0.91 44.21 27.74 68.60 1.90 46.12 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.20 1.52 7.62 -2.91 -0.02 1.50 16 33 H 0.15 4.30 6.53 -2.91 -0.02 4.28 16 34 H 0.44 10.02 6.29 -92.72 -0.58 9.44 16 35 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 37 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -69.96 349.35 6.35 -63.61 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.53 Total: 11.25 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.85 Total: 2.91 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.12 Total: -73.35 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.31 Total: -37.96 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.54 Total: -3.63 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.05 Total: -8.95 kcal Total: -69.96 6.35 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153381781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.948 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds