Wall clock time and date at job start Wed Apr 1 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.54554 * 2 1 4 4 O 1.42108 * 110.54027 * 223.25180 * 2 1 3 5 5 C 1.76199 * 104.45330 * 111.62815 * 2 1 3 6 6 C 1.38417 * 119.91080 * 89.99539 * 5 2 1 7 7 C 1.38265 * 120.31861 * 180.02562 * 6 5 2 8 8 C 1.38159 * 120.13163 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 120.09608 * 179.97438 * 8 7 6 10 10 C 1.39693 * 119.81215 * 359.97438 * 8 7 6 11 11 C 1.47766 * 120.15638 * 180.02562 * 10 8 7 12 12 O 1.21565 * 119.99693 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00147 * 180.02562 * 11 10 8 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46969 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46861 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00200 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47227 * 90.00066 * 21 19 17 23 23 H 1.48500 * 109.46628 * 209.99752 * 21 19 17 24 24 H 1.48493 * 109.47109 * 329.99411 * 21 19 17 25 25 C 1.37905 * 119.90751 * 270.23475 * 5 2 1 26 26 H 1.09003 * 109.47015 * 308.36896 * 1 2 3 27 27 H 1.08997 * 109.47522 * 68.37132 * 1 2 3 28 28 H 1.09001 * 109.46960 * 188.37826 * 1 2 3 29 29 H 1.08003 * 119.84194 * 359.97438 * 6 5 2 30 30 H 1.07999 * 119.93712 * 179.97438 * 7 6 5 31 31 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 33 33 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 34 34 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 35 35 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 36 36 H 1.08992 * 109.47534 * 299.99582 * 16 15 14 37 37 H 1.08996 * 109.47134 * 60.00388 * 16 15 14 38 38 H 0.97002 * 119.99797 * 180.02562 * 20 19 17 39 39 H 1.07992 * 120.06404 * 0.03875 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4259 -1.9906 1.7652 7 6 2.7705 -2.4932 3.0063 8 6 2.9458 -1.6376 4.0768 9 17 3.3778 -2.2698 5.6348 10 6 2.7745 -0.2623 3.9020 11 6 2.9606 0.6597 5.0415 12 8 3.2631 0.2218 6.1345 13 7 2.7940 1.9860 4.8695 14 6 2.9780 2.9001 5.9995 15 6 2.7322 4.3379 5.5377 16 6 2.9238 5.2924 6.7179 17 6 2.6823 6.7086 6.2629 18 1 2.4189 6.9079 5.2346 19 6 2.7985 7.7501 7.1591 20 7 3.1197 7.5073 8.4111 21 14 2.4984 9.5054 6.5951 22 1 1.0629 9.8430 6.7699 23 1 3.3274 10.4339 7.4050 24 1 2.8666 9.6348 5.1624 25 6 2.4206 0.2365 2.6468 26 1 -0.3633 0.6379 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.2896 -2.6637 0.9317 30 1 2.9029 -3.5568 3.1392 31 1 2.5523 2.3354 3.9975 32 1 2.2723 2.6466 6.7906 33 1 3.9962 2.8095 6.3781 34 1 3.4383 4.5912 4.7468 35 1 1.7142 4.4288 5.1587 36 1 2.2175 5.0391 7.5085 37 1 3.9416 5.2017 7.0971 38 1 3.2011 8.2399 9.0417 39 1 2.2814 1.2981 2.5060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171508371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:16 Heat of formation + Delta-G solvation = -86.208717 kcal Electronic energy + Delta-G solvation = -24642.682137 eV Core-core repulsion = 20703.769626 eV Total energy + Delta-G solvation = -3938.912511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53163 -38.69644 -37.57641 -36.83536 -36.39567 -35.50201 -33.46776 -32.21650 -31.67568 -30.88491 -30.00426 -26.92901 -24.62732 -23.78782 -22.90992 -20.94290 -20.58091 -19.31911 -18.61730 -17.04481 -16.97789 -16.64887 -16.58319 -16.24720 -15.76324 -15.50894 -15.08801 -14.89157 -14.44549 -14.35646 -13.91416 -13.72641 -13.67757 -13.43497 -13.20940 -12.60890 -12.54292 -12.35483 -12.30242 -12.10755 -11.87719 -11.76530 -11.65066 -11.49257 -11.21559 -10.91502 -10.75353 -10.59756 -9.89706 -9.80180 -9.73713 -9.60214 -9.39642 -9.13549 -8.87369 -8.38174 -6.02833 -4.05926 -0.49543 0.00630 0.35287 1.67595 2.25502 2.39516 3.09397 3.20993 3.30576 3.37162 3.40336 3.43929 3.58534 4.01791 4.16022 4.26046 4.34098 4.43737 4.64090 4.65507 4.79574 5.09129 5.11517 5.12835 5.30811 5.33143 5.43544 5.67644 5.72901 5.93791 6.11440 6.35208 6.55668 6.76415 6.96293 7.52109 7.61967 7.73880 7.95677 8.17844 8.36878 9.00750 9.58437 11.08463 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.002644 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.942336 B =10585.745983 C =12942.818613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.502 3.498 3 O -0.928 6.928 4 O -0.934 6.934 5 C -0.670 4.670 6 C 0.007 3.993 7 C -0.140 4.140 8 C 0.060 3.940 9 Cl -0.012 7.012 10 C -0.142 4.142 11 C 0.545 3.455 12 O -0.514 6.514 13 N -0.719 5.719 14 C 0.117 3.883 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.019 3.981 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -23.314 -17.422 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.925 6.925 4 O -0.931 6.931 5 C -0.755 4.755 6 C -0.012 4.012 7 C -0.160 4.160 8 C 0.032 3.968 9 Cl 0.018 6.982 10 C -0.147 4.147 11 C 0.330 3.670 12 O -0.391 6.391 13 N -0.370 5.370 14 C -0.005 4.005 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.001 4.001 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.359 -23.318 -16.898 29.292 hybrid contribution -0.681 0.838 0.254 1.109 sum -6.040 -22.480 -16.644 28.616 Atomic orbital electron populations 1.30226 1.25089 1.12287 1.12351 1.05281 0.78071 0.74772 0.73863 1.93636 1.77278 1.36018 1.85593 1.93599 1.77475 1.61761 1.60312 1.30707 1.19424 1.02920 1.22474 1.21078 0.89736 0.93189 0.97178 1.21233 1.02644 1.00673 0.91432 1.21438 0.93681 0.92532 0.89148 1.98462 1.89698 1.85783 1.24297 1.20071 1.06269 0.93089 0.95278 1.17950 0.78770 0.82595 0.87645 1.90886 1.46349 1.76497 1.25351 1.46173 1.70208 1.05983 1.14639 1.21728 1.01956 0.89220 0.87584 1.21922 1.00853 0.91697 1.01604 1.19021 0.97559 0.92741 0.91996 1.21205 1.47398 0.91537 0.95963 0.92582 1.25032 0.95233 0.99273 0.94928 1.69966 1.48175 1.32031 1.03129 0.86575 0.78121 0.84495 0.78700 1.20672 1.21220 1.19829 1.21126 0.89116 1.00031 0.89790 0.84602 0.84671 0.84854 0.82700 0.83201 0.76775 0.91378 0.91372 0.92498 0.92615 0.96265 0.96232 0.92920 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.39 10.80 101.05 1.09 -0.30 16 2 S 2.50 15.14 5.79 -107.50 -0.62 14.52 16 3 O -0.93 -9.14 17.12 -57.54 -0.99 -10.13 16 4 O -0.93 -8.18 17.12 -57.54 -0.98 -9.16 16 5 C -0.67 -4.82 5.65 -39.64 -0.22 -5.05 16 6 C 0.01 0.05 9.46 -39.51 -0.37 -0.33 16 7 C -0.14 -1.05 9.82 -39.60 -0.39 -1.44 16 8 C 0.06 0.65 6.35 -39.07 -0.25 0.40 16 9 Cl -0.01 -0.15 26.02 -51.86 -1.35 -1.50 16 10 C -0.14 -1.64 5.88 -104.94 -0.62 -2.26 16 11 C 0.55 7.97 7.77 -12.37 -0.10 7.88 16 12 O -0.51 -9.11 13.97 5.31 0.07 -9.03 16 13 N -0.72 -10.05 5.51 -61.27 -0.34 -10.38 16 14 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 15 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 16 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.02 0.17 8.96 -39.19 -0.35 -0.18 16 26 H 0.14 0.17 8.14 -51.92 -0.42 -0.25 16 27 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.13 0.05 8.14 -51.92 -0.42 -0.37 16 29 H 0.16 0.57 7.56 -52.48 -0.40 0.17 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.40 4.44 6.51 -40.82 -0.27 4.18 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.15 1.14 5.92 -52.49 -0.31 0.82 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -37.67 362.20 -9.69 -47.37 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.74 Total: -2.95 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.92 Total: -14.59 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.40 Total: -36.36 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.90 Total: -28.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 15.14 SS G_CDS: -0.62 Total: 14.52 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.67 -9.69 -47.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.843 kcal (2) G-P(sol) polarization free energy of solvation -37.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds