Wall clock time and date at job start Wed Apr 1 2020 03:18:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 O 1.42101 * 110.54272 * 2 1
4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3
5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3
6 6 C 1.37920 * 119.93446 * 114.72257 * 5 2 1
7 7 C 1.39599 * 119.86753 * 179.79717 * 6 5 2
8 8 C 1.47782 * 120.13011 * 180.25342 * 7 6 5
9 9 O 1.21561 * 120.00142 * 0.25430 * 8 7 6
10 10 N 1.34774 * 119.99920 * 180.24843 * 8 7 6
11 11 C 1.46502 * 119.99696 * 179.97438 * 10 8 7
12 12 C 1.53001 * 109.46821 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47191 * 180.02562 * 12 11 10
14 14 C 1.50701 * 109.47442 * 180.02562 * 13 12 11
15 15 H 1.08006 * 119.99691 * 359.97438 * 14 13 12
16 16 C 1.37874 * 120.00335 * 179.97438 * 14 13 12
17 17 N 1.31518 * 119.99784 * 359.97438 * 16 14 13
18 18 Si 1.86797 * 120.00084 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.47275 * 90.00175 * 18 16 14
20 20 H 1.48500 * 109.47235 * 210.00053 * 18 16 14
21 21 H 1.48500 * 109.47214 * 329.99732 * 18 16 14
22 22 C 1.39628 * 119.73807 * 0.50773 * 7 6 5
23 23 C 1.37875 * 119.86342 * 359.71917 * 22 7 6
24 24 C 1.38495 * 119.93861 * 295.00551 * 5 2 1
25 25 Cl 1.73601 * 119.86170 * 359.97280 * 24 5 2
26 26 H 1.09001 * 109.46838 * 51.62881 * 1 2 3
27 27 H 1.08998 * 109.46934 * 171.62681 * 1 2 3
28 28 H 1.08992 * 109.47290 * 291.62405 * 1 2 3
29 29 H 1.08001 * 120.06157 * 0.02562 * 6 5 2
30 30 H 0.96999 * 120.00164 * 0.02562 * 10 8 7
31 31 H 1.08997 * 109.47570 * 300.00294 * 11 10 8
32 32 H 1.09006 * 109.47390 * 60.00642 * 11 10 8
33 33 H 1.09003 * 109.47298 * 300.00016 * 12 11 10
34 34 H 1.09001 * 109.47241 * 60.00448 * 12 11 10
35 35 H 1.09005 * 109.46943 * 299.99525 * 13 12 11
36 36 H 1.08997 * 109.47497 * 60.00072 * 13 12 11
37 37 H 0.97004 * 120.00028 * 179.97438 * 17 16 14
38 38 H 1.07993 * 120.06710 * 179.70748 * 22 7 6
39 39 H 1.08001 * 119.92962 * 180.02562 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9692 0.9117
5 6 2.2537 -0.6289 -1.5861
6 6 2.9096 0.1806 -2.4898
7 6 3.2611 -0.3204 -3.7445
8 6 3.9689 0.5402 -4.7152
9 8 4.2502 1.6854 -4.4202
10 7 4.3025 0.0554 -5.9277
11 6 5.0037 0.9088 -6.8902
12 6 5.2621 0.1213 -8.1763
13 6 5.9949 1.0122 -9.1813
14 6 6.2489 0.2369 -10.4483
15 1 5.9209 -0.7890 -10.5285
16 6 6.9001 0.8370 -11.5050
17 7 7.2991 2.0864 -11.4075
18 14 7.2156 -0.1244 -13.0752
19 1 6.0699 0.0534 -14.0032
20 1 8.4568 0.3743 -13.7201
21 1 7.3709 -1.5652 -12.7508
22 6 2.9366 -1.6362 -4.0806
23 6 2.2767 -2.4344 -3.1705
24 6 1.9350 -1.9334 -1.9251
25 17 1.1035 -2.9443 -0.7847
26 1 -0.3633 0.6379 -0.8057
27 1 -0.3633 -1.0167 -0.1496
28 1 -0.3633 0.3787 0.9553
29 1 3.1539 1.1990 -2.2259
30 1 4.0778 -0.8583 -6.1633
31 1 4.3914 1.7820 -7.1152
32 1 5.9541 1.2313 -6.4649
33 1 5.8747 -0.7517 -7.9509
34 1 4.3119 -0.2016 -8.6018
35 1 5.3826 1.8854 -9.4068
36 1 6.9451 1.3348 -8.7557
37 1 7.7576 2.5086 -12.1509
38 1 3.2017 -2.0278 -5.0515
39 1 2.0255 -3.4525 -3.4292
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000264018931.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:59
Heat of formation + Delta-G solvation = -90.595667 kcal
Electronic energy + Delta-G solvation = -24358.476675 eV
Core-core repulsion = 20419.373932 eV
Total energy + Delta-G solvation = -3939.102743 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.59954 -38.90016 -37.63744 -37.13056 -36.37134 -35.61887 -33.54321 -32.29083
-31.76232 -30.93365 -30.02555 -26.98267 -24.61266 -24.01843 -22.80903 -21.10011
-20.62672 -19.38192 -18.64971 -17.14446 -16.99095 -16.78994 -16.59016 -16.32981
-15.80411 -15.53414 -15.14681 -14.72328 -14.54618 -14.49119 -14.03005 -13.94561
-13.78103 -13.59252 -13.31524 -12.53567 -12.47219 -12.41176 -12.32842 -12.15268
-12.03948 -11.91377 -11.78956 -11.45814 -11.19224 -10.95568 -10.82306 -10.65917
-10.18655 -10.12888 -9.95775 -9.50697 -9.49917 -9.18624 -8.96336 -8.42269
-6.06738 -4.10265 -0.50107 -0.10666 0.37308 1.16237 2.19122 2.32702
3.01975 3.19454 3.27105 3.33878 3.36011 3.37002 3.65525 4.01142
4.23948 4.27808 4.28966 4.39971 4.45789 4.66358 4.71048 5.09718
5.12868 5.17751 5.29131 5.33616 5.51084 5.59777 5.66230 5.92210
6.04846 6.27558 6.48761 6.68886 6.90069 7.44346 7.57153 7.68908
7.91215 8.09727 8.31938 8.96222 9.54241 11.04475
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.026202 B = 0.001889 C = 0.001787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.346274 B =14816.958070 C =15661.068318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.651 4.651
2 S 2.494 3.506
3 O -0.927 6.927
4 O -0.919 6.919
5 C -0.664 4.664
6 C 0.046 3.954
7 C -0.139 4.139
8 C 0.550 3.450
9 O -0.528 6.528
10 N -0.717 5.717
11 C 0.115 3.885
12 C -0.121 4.121
13 C 0.024 3.976
14 C -0.524 4.524
15 H 0.055 0.945
16 C 0.057 3.943
17 N -0.893 5.893
18 Si 0.894 3.106
19 H -0.280 1.280
20 H -0.286 1.286
21 H -0.274 1.274
22 C -0.024 4.024
23 C -0.130 4.130
24 C 0.062 3.938
25 Cl -0.040 7.040
26 H 0.136 0.864
27 H 0.132 0.868
28 H 0.138 0.862
29 H 0.170 0.830
30 H 0.397 0.603
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.055 0.945
34 H 0.055 0.945
35 H 0.020 0.980
36 H 0.020 0.980
37 H 0.262 0.738
38 H 0.148 0.852
39 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.624 -10.283 23.475 31.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.802 4.802
2 S 2.670 3.330
3 O -0.924 6.924
4 O -0.916 6.916
5 C -0.748 4.748
6 C 0.026 3.974
7 C -0.144 4.144
8 C 0.335 3.665
9 O -0.406 6.406
10 N -0.368 5.368
11 C -0.007 4.007
12 C -0.159 4.159
13 C -0.014 4.014
14 C -0.562 4.562
15 H 0.073 0.927
16 C -0.145 4.145
17 N -0.532 5.532
18 Si 0.722 3.278
19 H -0.206 1.206
20 H -0.212 1.212
21 H -0.199 1.199
22 C -0.043 4.043
23 C -0.149 4.149
24 C 0.034 3.966
25 Cl -0.011 7.011
26 H 0.155 0.845
27 H 0.151 0.849
28 H 0.156 0.844
29 H 0.187 0.813
30 H 0.232 0.768
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.074 0.926
34 H 0.074 0.926
35 H 0.038 0.962
36 H 0.038 0.962
37 H 0.071 0.929
38 H 0.166 0.834
39 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -16.805 -9.151 24.273 30.908
hybrid contribution -0.426 -1.426 -1.799 2.335
sum -17.230 -10.577 22.474 30.230
Atomic orbital electron populations
1.30284 1.24894 1.12486 1.12507 1.05593 0.78401 0.74972 0.73989
1.93623 1.77458 1.35941 1.85385 1.93646 1.77130 1.61263 1.59550
1.30580 1.16799 1.02100 1.25361 1.21150 0.86917 0.99833 0.89482
1.20360 1.02914 0.95034 0.96066 1.18037 0.79581 0.86867 0.82001
1.90830 1.54252 1.17942 1.77551 1.46147 1.59048 1.16948 1.14665
1.21760 0.96503 0.93757 0.88705 1.21908 1.00913 0.99513 0.93595
1.19031 0.95329 0.94621 0.92414 1.21179 1.37529 0.98544 0.98962
0.92654 1.25035 0.95665 0.94956 0.98830 1.69964 1.39455 1.11758
1.31984 0.86572 0.77740 0.80133 0.83394 1.20647 1.21177 1.19907
1.21689 0.91392 0.92010 0.99167 1.21135 1.00444 1.01547 0.91776
1.20700 0.94270 0.90106 0.91540 1.98446 1.75574 1.68143 1.58929
0.84492 0.84941 0.84355 0.81283 0.76782 0.91285 0.91282 0.92629
0.92645 0.96210 0.96188 0.92865 0.83408 0.83044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 -2.45 10.60 101.05 1.07 -1.38 16
2 S 2.49 20.40 5.23 -107.50 -0.56 19.84 16
3 O -0.93 -10.51 16.73 -57.54 -0.96 -11.47 16
4 O -0.92 -9.80 16.45 -57.54 -0.95 -10.75 16
5 C -0.66 -5.96 5.58 -39.60 -0.22 -6.18 16
6 C 0.05 0.49 9.04 -39.19 -0.35 0.14 16
7 C -0.14 -1.50 5.87 -104.97 -0.62 -2.11 16
8 C 0.55 7.69 7.77 -12.36 -0.10 7.59 16
9 O -0.53 -9.49 16.35 5.31 0.09 -9.40 16
10 N -0.72 -9.30 5.51 -61.27 -0.34 -9.63 16
11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16
12 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16
13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
14 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16
15 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16
16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
17 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16
18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16
19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
22 C -0.02 -0.18 9.54 -39.20 -0.37 -0.55 16
23 C -0.13 -0.87 9.81 -39.61 -0.39 -1.26 16
24 C 0.06 0.49 6.29 -39.38 -0.25 0.24 16
25 Cl -0.04 -0.28 24.79 -51.86 -1.29 -1.57 16
26 H 0.14 0.30 8.14 -51.92 -0.42 -0.12 16
27 H 0.13 0.40 6.29 -51.92 -0.33 0.08 16
28 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16
29 H 0.17 1.95 6.80 -52.49 -0.36 1.60 16
30 H 0.40 3.82 6.50 -40.82 -0.27 3.55 16
31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
38 H 0.15 0.72 6.40 -52.49 -0.34 0.38 16
39 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16
LS Contribution 359.42 15.07 5.42 5.42
Total: -1.00 -36.32 359.42 -9.45 -45.77
By element:
Atomic # 1 Polarization: 2.62 SS G_CDS: -4.63 Total: -2.01 kcal
Atomic # 6 Polarization: -14.69 SS G_CDS: -1.94 Total: -16.63 kcal
Atomic # 7 Polarization: -35.66 SS G_CDS: 0.40 Total: -35.26 kcal
Atomic # 8 Polarization: -29.80 SS G_CDS: -1.82 Total: -31.63 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal
Atomic # 16 Polarization: 20.40 SS G_CDS: -0.56 Total: 19.84 kcal
Atomic # 17 Polarization: -0.28 SS G_CDS: -1.29 Total: -1.57 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -36.32 -9.45 -45.77 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264018931.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.827 kcal
(2) G-P(sol) polarization free energy of solvation -36.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds