Wall clock time and date at job start Wed Apr 1 2020 03:18:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 O 1.42101 * 110.54272 * 2 1
4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3
5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3
6 6 C 1.37920 * 119.93446 * 114.72257 * 5 2 1
7 7 C 1.39599 * 119.86753 * 179.79717 * 6 5 2
8 8 C 1.47782 * 120.13011 * 180.25342 * 7 6 5
9 9 O 1.21561 * 120.00142 * 0.25430 * 8 7 6
10 10 N 1.34774 * 119.99920 * 180.24843 * 8 7 6
11 11 C 1.46502 * 119.99696 * 179.97438 * 10 8 7
12 12 C 1.53001 * 109.46821 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47191 * 180.02562 * 12 11 10
14 14 C 1.50701 * 109.47442 * 180.02562 * 13 12 11
15 15 H 1.08006 * 119.99691 * 359.97438 * 14 13 12
16 16 C 1.37874 * 120.00335 * 179.97438 * 14 13 12
17 17 N 1.31518 * 119.99784 * 359.97438 * 16 14 13
18 18 Si 1.86797 * 120.00084 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.47275 * 90.00175 * 18 16 14
20 20 H 1.48500 * 109.47235 * 210.00053 * 18 16 14
21 21 H 1.48500 * 109.47214 * 329.99732 * 18 16 14
22 22 C 1.39628 * 119.73807 * 0.50773 * 7 6 5
23 23 C 1.37875 * 119.86342 * 359.71917 * 22 7 6
24 24 C 1.38495 * 119.93861 * 295.00551 * 5 2 1
25 25 Cl 1.73601 * 119.86170 * 359.97280 * 24 5 2
26 26 H 1.09001 * 109.46838 * 51.62881 * 1 2 3
27 27 H 1.08998 * 109.46934 * 171.62681 * 1 2 3
28 28 H 1.08992 * 109.47290 * 291.62405 * 1 2 3
29 29 H 1.08001 * 120.06157 * 0.02562 * 6 5 2
30 30 H 0.96999 * 120.00164 * 0.02562 * 10 8 7
31 31 H 1.08997 * 109.47570 * 300.00294 * 11 10 8
32 32 H 1.09006 * 109.47390 * 60.00642 * 11 10 8
33 33 H 1.09003 * 109.47298 * 300.00016 * 12 11 10
34 34 H 1.09001 * 109.47241 * 60.00448 * 12 11 10
35 35 H 1.09005 * 109.46943 * 299.99525 * 13 12 11
36 36 H 1.08997 * 109.47497 * 60.00072 * 13 12 11
37 37 H 0.97004 * 120.00028 * 179.97438 * 17 16 14
38 38 H 1.07993 * 120.06710 * 179.70748 * 22 7 6
39 39 H 1.08001 * 119.92962 * 180.02562 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9692 0.9117
5 6 2.2537 -0.6289 -1.5861
6 6 2.9096 0.1806 -2.4898
7 6 3.2611 -0.3204 -3.7445
8 6 3.9689 0.5402 -4.7152
9 8 4.2502 1.6854 -4.4202
10 7 4.3025 0.0554 -5.9277
11 6 5.0037 0.9088 -6.8902
12 6 5.2621 0.1213 -8.1763
13 6 5.9949 1.0122 -9.1813
14 6 6.2489 0.2369 -10.4483
15 1 5.9209 -0.7890 -10.5285
16 6 6.9001 0.8370 -11.5050
17 7 7.2991 2.0864 -11.4075
18 14 7.2156 -0.1244 -13.0752
19 1 6.0699 0.0534 -14.0032
20 1 8.4568 0.3743 -13.7201
21 1 7.3709 -1.5652 -12.7508
22 6 2.9366 -1.6362 -4.0806
23 6 2.2767 -2.4344 -3.1705
24 6 1.9350 -1.9334 -1.9251
25 17 1.1035 -2.9443 -0.7847
26 1 -0.3633 0.6379 -0.8057
27 1 -0.3633 -1.0167 -0.1496
28 1 -0.3633 0.3787 0.9553
29 1 3.1539 1.1990 -2.2259
30 1 4.0778 -0.8583 -6.1633
31 1 4.3914 1.7820 -7.1152
32 1 5.9541 1.2313 -6.4649
33 1 5.8747 -0.7517 -7.9509
34 1 4.3119 -0.2016 -8.6018
35 1 5.3826 1.8854 -9.4068
36 1 6.9451 1.3348 -8.7557
37 1 7.7576 2.5086 -12.1509
38 1 3.2017 -2.0278 -5.0515
39 1 2.0255 -3.4525 -3.4292
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000264018931.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:58
Heat of formation + Delta-G solvation = -117.556531 kcal
Electronic energy + Delta-G solvation = -24359.645786 eV
Core-core repulsion = 20419.373932 eV
Total energy + Delta-G solvation = -3940.271854 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.51097 -39.80667 -38.34849 -37.77301 -37.09319 -37.05588 -35.29949 -33.51122
-32.56135 -32.16093 -30.42454 -28.67167 -25.81277 -24.84823 -24.10166 -22.38528
-21.90457 -20.25451 -19.41892 -18.54261 -17.95508 -17.64882 -17.39871 -17.23816
-16.85931 -16.79729 -16.45597 -15.95094 -15.58711 -15.36211 -15.09407 -14.93810
-14.28385 -14.15526 -14.08628 -13.92109 -13.75109 -13.56750 -13.27546 -13.20812
-13.13701 -12.77916 -12.69983 -12.65891 -12.55386 -12.38865 -12.02883 -11.81799
-11.68079 -11.64591 -11.27970 -11.06541 -10.75960 -10.55013 -10.35218 -10.06250
-8.19141 -6.30532 -1.07282 -0.79931 -0.32695 0.55562 1.38544 1.42512
1.43648 1.54452 1.68820 1.95158 2.32645 2.42545 2.74914 3.04973
3.14985 3.43105 3.45795 3.70552 3.86372 3.98827 4.01324 4.14838
4.18716 4.20308 4.44345 4.53159 4.56176 4.69657 4.84558 4.85836
4.93370 4.95092 5.16844 5.25356 5.34196 5.52387 5.71005 5.84768
6.21900 6.40001 6.87475 7.04315 7.39259 8.92917
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.026202 B = 0.001889 C = 0.001787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.346274 B =14816.958070 C =15661.068318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.625 4.625
2 S 2.485 3.515
3 O -0.971 6.971
4 O -0.951 6.951
5 C -0.665 4.665
6 C 0.028 3.972
7 C -0.156 4.156
8 C 0.550 3.450
9 O -0.579 6.579
10 N -0.703 5.703
11 C 0.127 3.873
12 C -0.101 4.101
13 C 0.022 3.978
14 C -0.539 4.539
15 H 0.069 0.931
16 C -0.005 4.005
17 N -0.936 5.936
18 Si 0.967 3.033
19 H -0.273 1.273
20 H -0.287 1.287
21 H -0.259 1.259
22 C -0.010 4.010
23 C -0.119 4.119
24 C 0.061 3.939
25 Cl -0.028 7.028
26 H 0.159 0.841
27 H 0.147 0.853
28 H 0.166 0.834
29 H 0.148 0.852
30 H 0.417 0.583
31 H 0.054 0.946
32 H 0.052 0.948
33 H 0.071 0.929
34 H 0.073 0.927
35 H -0.008 1.008
36 H -0.009 1.009
37 H 0.263 0.737
38 H 0.180 0.820
39 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.900 -13.843 23.197 33.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.779 4.779
2 S 2.666 3.334
3 O -0.969 6.969
4 O -0.948 6.948
5 C -0.750 4.750
6 C 0.008 3.992
7 C -0.160 4.160
8 C 0.338 3.662
9 O -0.460 6.460
10 N -0.355 5.355
11 C 0.004 3.996
12 C -0.139 4.139
13 C -0.016 4.016
14 C -0.577 4.577
15 H 0.087 0.913
16 C -0.203 4.203
17 N -0.576 5.576
18 Si 0.792 3.208
19 H -0.198 1.198
20 H -0.213 1.213
21 H -0.183 1.183
22 C -0.029 4.029
23 C -0.138 4.138
24 C 0.033 3.967
25 Cl 0.002 6.998
26 H 0.177 0.823
27 H 0.165 0.835
28 H 0.184 0.816
29 H 0.165 0.835
30 H 0.256 0.744
31 H 0.073 0.927
32 H 0.070 0.930
33 H 0.089 0.911
34 H 0.091 0.909
35 H 0.011 0.989
36 H 0.009 0.991
37 H 0.071 0.929
38 H 0.198 0.802
39 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -19.061 -12.767 24.000 33.201
hybrid contribution 0.178 -0.346 -1.627 1.672
sum -18.883 -13.113 22.373 32.079
Atomic orbital electron populations
1.30115 1.18490 1.14230 1.15101 1.05646 0.80821 0.73604 0.73338
1.93573 1.79869 1.37628 1.85783 1.93601 1.79404 1.61539 1.60299
1.30524 1.16827 1.02657 1.24994 1.21009 0.88274 0.99516 0.90366
1.20089 1.04476 0.96191 0.95291 1.18524 0.78842 0.86574 0.82289
1.90804 1.56322 1.20347 1.78500 1.45829 1.58369 1.17459 1.13812
1.21336 0.95917 0.93658 0.88706 1.21607 1.01107 0.98602 0.92613
1.18956 0.94277 0.94765 0.93599 1.21684 1.36966 0.99272 0.99761
0.91301 1.26037 0.95537 0.95919 1.02786 1.70117 1.40602 1.13709
1.33189 0.85417 0.77519 0.79148 0.78763 1.19826 1.21297 1.18299
1.21993 0.90096 0.90234 1.00576 1.21555 0.98808 1.02818 0.90639
1.20903 0.93852 0.89701 0.92293 1.98454 1.75177 1.67529 1.58683
0.82309 0.83479 0.81642 0.83474 0.74410 0.92718 0.92985 0.91056
0.90850 0.98941 0.99054 0.92874 0.80240 0.79441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.63 -2.97 10.60 113.37 1.20 -1.77 16
2 S 2.48 40.30 5.23 -56.49 -0.30 40.01 16
3 O -0.97 -23.53 16.73 -127.65 -2.14 -25.66 16
4 O -0.95 -20.26 16.45 -127.65 -2.10 -22.36 16
5 C -0.67 -11.57 5.58 22.26 0.12 -11.45 16
6 C 0.03 0.63 9.04 22.52 0.20 0.83 16
7 C -0.16 -3.26 5.87 -20.09 -0.12 -3.38 16
8 C 0.55 15.57 7.77 86.77 0.67 16.24 16
9 O -0.58 -22.05 16.35 -3.91 -0.06 -22.11 16
10 N -0.70 -17.52 5.51 -466.02 -2.57 -20.08 16
11 C 0.13 4.23 5.67 86.38 0.49 4.72 16
12 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16
13 C 0.02 1.09 4.97 29.85 0.15 1.24 16
14 C -0.54 -29.17 9.11 25.60 0.23 -28.94 16
15 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16
16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16
17 N -0.94 -56.54 13.29 21.45 0.28 -56.26 16
18 Si 0.97 42.91 29.54 68.60 2.03 44.94 16
19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16
20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
22 C -0.01 -0.12 9.54 22.52 0.21 0.09 16
23 C -0.12 -1.15 9.81 22.25 0.22 -0.93 16
24 C 0.06 0.81 6.29 22.40 0.14 0.96 16
25 Cl -0.03 -0.32 24.79 -2.72 -0.07 -0.38 16
26 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16
27 H 0.15 0.37 6.29 -2.39 -0.02 0.36 16
28 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16
29 H 0.15 3.85 6.80 -2.91 -0.02 3.83 16
30 H 0.42 6.82 6.50 -92.71 -0.60 6.22 16
31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
32 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16
33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16
36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16
37 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16
38 H 0.18 0.91 6.40 -2.91 -0.02 0.89 16
39 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16
Total: -1.00 -83.24 359.42 -0.27 -83.51
By element:
Atomic # 1 Polarization: 3.59 SS G_CDS: 0.49 Total: 4.08 kcal
Atomic # 6 Polarization: -29.83 SS G_CDS: 4.16 Total: -25.68 kcal
Atomic # 7 Polarization: -74.06 SS G_CDS: -2.28 Total: -76.34 kcal
Atomic # 8 Polarization: -65.83 SS G_CDS: -4.30 Total: -70.13 kcal
Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal
Atomic # 16 Polarization: 40.30 SS G_CDS: -0.30 Total: 40.01 kcal
Atomic # 17 Polarization: -0.32 SS G_CDS: -0.07 Total: -0.38 kcal
Total: -83.24 -0.27 -83.51 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264018931.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.046 kcal
(2) G-P(sol) polarization free energy of solvation -83.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.557 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds