Wall clock time and date at job start Wed Apr 1 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00136 * 2 1 4 4 N 1.46498 * 109.47400 * 124.99864 * 3 2 1 5 5 C 1.46496 * 120.00050 * 275.00175 * 4 3 2 6 6 C 1.50695 * 109.47302 * 274.99985 * 5 4 3 7 7 H 1.08005 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00386 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00310 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99820 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46789 * 90.00111 * 10 8 6 12 12 H 1.48498 * 109.47070 * 209.99639 * 10 8 6 13 13 H 1.48495 * 109.47199 * 330.00288 * 10 8 6 14 14 S 1.65599 * 120.00008 * 94.99779 * 4 3 2 15 15 O 1.42105 * 106.40031 * 336.46338 * 14 4 3 16 16 O 1.42095 * 106.40550 * 203.54123 * 14 4 3 17 17 C 1.76198 * 107.21691 * 90.00135 * 14 4 3 18 18 C 1.33444 * 125.97104 * 89.98197 * 17 14 4 19 19 N 1.31991 * 114.57218 * 179.76550 * 18 17 14 20 20 C 1.29626 * 116.91149 * 0.52021 * 19 18 17 21 21 N 1.39004 * 124.93803 * 179.76952 * 20 19 18 22 22 C 1.34777 * 120.00271 * 359.69858 * 21 20 19 23 23 C 1.50702 * 119.99928 * 180.27567 * 22 21 20 24 24 O 1.21283 * 119.99750 * 359.97438 * 22 21 20 25 25 S 1.70960 * 110.11365 * 359.50480 * 20 19 18 26 26 H 1.08001 * 119.99974 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00363 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99950 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46955 * 4.99814 * 3 2 1 30 30 H 1.08999 * 109.47114 * 245.00256 * 3 2 1 31 31 H 1.09000 * 109.47391 * 34.99750 * 5 4 3 32 32 H 1.09000 * 109.47360 * 154.99953 * 5 4 3 33 33 H 0.96997 * 120.00698 * 179.97438 * 9 8 6 34 34 H 1.07999 * 122.71087 * 0.02562 * 18 17 14 35 35 H 0.97000 * 119.99412 * 179.69044 * 21 20 19 36 36 H 1.09001 * 109.47107 * 179.72352 * 23 22 21 37 37 H 1.09004 * 109.46965 * 299.72211 * 23 22 21 38 38 H 1.09000 * 109.47154 * 59.71645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5284 1.7622 2.4522 6 6 2.5990 3.2646 2.5449 7 1 2.9553 3.8414 1.7041 8 6 2.2098 3.9030 3.7033 9 7 2.2719 5.2141 3.7844 10 14 1.5943 2.9054 5.1578 11 1 2.7394 2.5488 6.0336 12 1 0.6126 3.7092 5.9294 13 1 0.9417 1.6652 4.6668 14 16 4.5712 0.8759 0.9173 15 8 4.5922 0.0262 -0.2215 16 8 5.0503 0.4764 2.1940 17 6 5.4768 2.3215 0.4762 18 6 6.0772 3.1594 1.3236 19 7 6.6986 4.1713 0.7473 20 6 6.6429 4.2340 -0.5462 21 7 7.2313 5.2267 -1.3212 22 6 7.9178 6.2247 -0.7303 23 6 8.5504 7.3044 -1.5701 24 8 8.0217 6.2570 0.4777 25 16 5.7468 2.9141 -1.1608 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 1.4983 1.4372 2.5982 32 1 3.1613 1.3205 3.2220 33 1 1.9978 5.6633 4.5992 34 1 6.0599 3.0184 2.3943 35 1 7.1480 5.2010 -2.2872 36 1 9.0540 8.0210 -0.9214 37 1 9.2757 6.8575 -2.2501 38 1 7.7790 7.8153 -2.1463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292534393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:02 Heat of formation + Delta-G solvation = -51.204922 kcal Electronic energy + Delta-G solvation = -26049.404416 eV Core-core repulsion = 22146.346241 eV Total energy + Delta-G solvation = -3903.058175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72506 -40.08138 -38.40508 -38.03467 -37.01628 -36.28587 -34.95917 -33.67397 -31.83866 -30.21351 -29.93101 -26.54823 -26.36550 -23.93960 -23.57399 -21.22258 -21.01241 -20.77631 -19.54075 -19.01105 -18.52880 -18.19713 -18.01334 -17.26309 -17.05512 -16.99958 -16.21673 -15.87046 -15.54169 -15.44142 -15.31035 -15.11411 -14.60147 -14.46007 -13.88600 -13.56547 -13.50635 -13.37067 -13.24865 -13.18229 -13.10349 -12.98287 -12.85590 -12.47950 -12.39537 -12.35141 -12.05082 -11.89323 -11.66960 -11.56803 -10.77607 -10.67287 -10.60114 -10.30564 -9.90480 -9.67050 -8.28174 -6.33517 -0.96523 -0.63485 -0.22800 0.16418 1.19379 1.36559 1.40507 1.41398 1.48642 1.68541 1.77472 2.07393 2.35381 2.62999 3.07237 3.16695 3.36085 3.80425 3.85655 4.14166 4.17447 4.41575 4.43067 4.53716 4.63024 4.68401 4.87999 4.92398 4.96484 5.05642 5.11903 5.27714 5.45705 5.61419 5.78543 5.82748 5.96421 6.28666 6.46651 6.71919 6.97009 7.31296 8.87184 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004748 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.897582 B = 5896.209222 C = 7447.212528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.146 3.854 4 N -0.972 5.972 5 C 0.221 3.779 6 C -0.535 4.535 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.940 5.940 10 Si 0.923 3.077 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.235 1.235 14 S 2.733 3.267 15 O -0.963 6.963 16 O -0.979 6.979 17 C -0.862 4.862 18 C 0.216 3.784 19 N -0.534 5.534 20 C 0.284 3.716 21 N -0.618 5.618 22 C 0.494 3.506 23 C -0.153 4.153 24 O -0.534 6.534 25 S 0.295 5.705 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.176 0.824 35 H 0.449 0.551 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -2.614 -18.202 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.021 3.979 4 N -0.809 5.809 5 C 0.096 3.904 6 C -0.574 4.574 7 H 0.064 0.936 8 C -0.177 4.177 9 N -0.580 5.580 10 Si 0.747 3.253 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.158 1.158 14 S 2.819 3.181 15 O -0.953 6.953 16 O -0.970 6.970 17 C -1.068 5.068 18 C 0.057 3.943 19 N -0.257 5.257 20 C -0.083 4.083 21 N -0.273 5.273 22 C 0.282 3.718 23 C -0.212 4.212 24 O -0.406 6.406 25 S 0.547 5.453 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.292 0.708 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.271 -3.022 -17.979 19.280 hybrid contribution -0.177 0.816 1.740 1.930 sum 6.094 -2.206 -16.239 17.485 Atomic orbital electron populations 1.24067 0.95182 1.03083 0.97903 1.23344 0.96995 0.98279 1.02111 1.20520 0.93078 0.96915 0.87351 1.57151 1.24460 1.82275 1.17044 1.19425 0.97411 0.93713 0.79836 1.21582 1.43867 0.91520 1.00422 0.93555 1.25659 0.95294 0.95537 1.01245 1.70040 1.49312 1.09748 1.28884 0.86070 0.79121 0.80269 0.79882 1.19793 1.20726 1.15781 1.00700 0.72134 0.72567 0.72705 1.93530 1.86901 1.62829 1.52013 1.93510 1.80624 1.80802 1.42026 1.37070 1.31827 1.32834 1.05060 1.21286 0.86712 0.85016 1.01296 1.66682 1.25965 1.24784 1.08277 1.24771 0.96374 0.95297 0.91904 1.43546 1.50947 1.21773 1.11052 1.22640 0.77106 0.82610 0.89438 1.22012 1.03323 0.95018 1.00855 1.90899 1.57149 1.74889 1.17619 1.82907 1.46827 1.14155 1.01428 0.86398 0.87856 0.87154 0.89391 0.88767 0.92534 0.94132 0.92548 0.80732 0.70798 0.88610 0.85188 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 14.32 67.79 0.97 -2.89 16 2 C -0.19 -5.24 9.84 25.65 0.25 -4.99 16 3 C 0.15 4.66 5.78 85.63 0.50 5.15 16 4 N -0.97 -37.94 2.75 -523.94 -1.44 -39.38 16 5 C 0.22 10.01 4.50 85.63 0.39 10.40 16 6 C -0.53 -28.87 9.94 25.60 0.25 -28.62 16 7 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 8 C 0.02 1.22 5.47 84.65 0.46 1.69 16 9 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 10 Si 0.92 42.78 27.47 68.60 1.88 44.66 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 14 S 2.73 106.40 5.80 -56.49 -0.33 106.08 16 15 O -0.96 -35.48 16.92 -128.00 -2.17 -37.65 16 16 O -0.98 -43.69 16.39 -128.00 -2.10 -45.78 16 17 C -0.86 -32.50 6.64 66.73 0.44 -32.06 16 18 C 0.22 9.14 11.06 83.58 0.92 10.07 16 19 N -0.53 -22.22 8.65 -201.76 -1.75 -23.96 16 20 C 0.28 8.88 8.02 179.20 1.44 10.32 16 21 N -0.62 -12.81 5.40 -313.65 -1.69 -14.51 16 22 C 0.49 11.72 7.90 87.66 0.69 12.41 16 23 C -0.15 -1.40 10.32 71.24 0.74 -0.66 16 24 O -0.53 -20.40 15.72 -3.04 -0.05 -20.45 16 25 S 0.30 8.12 23.14 -56.49 -1.31 6.81 16 26 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.10 2.35 7.84 -2.91 -0.02 2.32 16 28 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.09 2.85 7.76 -2.39 -0.02 2.83 16 30 H 0.09 2.61 7.61 -2.39 -0.02 2.59 16 31 H 0.06 2.42 7.17 -2.39 -0.02 2.41 16 32 H 0.04 1.91 6.34 -2.39 -0.02 1.89 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.18 7.74 8.06 -2.91 -0.02 7.72 16 35 H 0.45 3.88 8.82 -92.71 -0.82 3.06 16 36 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -85.50 361.23 -1.36 -86.85 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.23 Total: 13.95 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 7.05 Total: -19.18 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -4.58 Total: -135.30 kcal Atomic # 8 Polarization: -99.57 SS G_CDS: -4.31 Total: -103.88 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 16 Polarization: 114.52 SS G_CDS: -1.63 Total: 112.88 kcal Total: -85.50 -1.36 -86.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292534393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.649 kcal (2) G-P(sol) polarization free energy of solvation -85.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds