Wall clock time and date at job start Wed Apr 1 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00107 * 2 1 4 4 O 1.20816 * 119.99729 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99697 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46632 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99707 * 263.99436 * 6 5 3 8 8 H 1.08004 * 119.99369 * 197.01173 * 7 6 5 9 9 C 1.38952 * 120.00159 * 17.00998 * 7 6 5 10 10 N 1.31415 * 119.99857 * 21.25714 * 9 7 6 11 11 Si 1.86793 * 119.99832 * 201.25847 * 9 7 6 12 12 H 1.48497 * 109.47405 * 89.99863 * 11 9 7 13 13 H 1.48495 * 109.47188 * 210.00102 * 11 9 7 14 14 H 1.48500 * 109.47265 * 330.00228 * 11 9 7 15 15 C 1.34766 * 120.00077 * 83.99221 * 6 5 3 16 16 O 1.21289 * 120.00379 * 0.02562 * 15 6 5 17 17 C 1.50704 * 120.00173 * 179.97438 * 15 6 5 18 18 O 1.42900 * 109.47402 * 180.02562 * 17 15 6 19 19 C 1.35920 * 117.00237 * 180.02562 * 18 17 15 20 20 C 1.38747 * 120.02710 * 0.02562 * 19 18 17 21 21 C 1.38150 * 120.00453 * 179.97438 * 20 19 18 22 22 C 1.38343 * 120.06210 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 119.96575 * 180.27753 * 22 21 20 24 24 C 1.38566 * 120.06319 * 0.02562 * 22 21 20 25 25 F 1.35099 * 120.00302 * 180.02562 * 24 22 21 26 26 C 1.38369 * 119.99503 * 359.97438 * 24 22 21 27 27 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46840 * 299.99765 * 1 2 3 29 29 H 1.09000 * 109.46964 * 60.00112 * 1 2 3 30 30 H 1.08999 * 109.46734 * 60.00893 * 5 3 2 31 31 H 1.08992 * 109.47525 * 300.00092 * 5 3 2 32 32 H 0.97000 * 119.99372 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.46818 * 60.00370 * 17 15 6 34 34 H 1.08995 * 109.47083 * 300.00530 * 17 15 6 35 35 H 1.07994 * 120.00275 * 0.02562 * 20 19 18 36 36 H 1.07992 * 119.96784 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.03272 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2957 3.3021 -1.1795 8 1 4.8549 4.2261 -1.1708 9 6 3.8944 2.7442 -2.3872 10 7 2.8947 1.8918 -2.4172 11 14 4.7761 3.2058 -3.9679 12 1 5.9063 2.2700 -4.1959 13 1 3.8268 3.1222 -5.1068 14 1 5.2962 4.5924 -3.8579 15 6 4.0552 3.3603 1.1620 16 8 3.7779 2.8096 2.2064 17 6 4.4830 4.8053 1.1626 18 8 4.4828 5.3016 2.5026 19 6 4.8470 6.5991 2.6802 20 6 5.1966 7.3780 1.5865 21 6 5.5661 8.6968 1.7675 22 6 5.5875 9.2423 3.0386 23 17 6.0452 10.9019 3.2624 24 6 5.2388 8.4669 4.1328 25 9 5.2595 9.0010 5.3735 26 6 4.8683 7.1457 3.9544 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9563 0.7806 -0.8892 31 1 3.9558 0.7809 0.8907 32 1 2.6149 1.5020 -3.2603 33 1 3.7894 5.3898 0.5582 34 1 5.4866 4.8872 0.7453 35 1 5.1792 6.9536 0.5936 36 1 5.8386 9.3024 0.9159 37 1 4.5968 6.5406 4.8068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340561369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:29 Heat of formation + Delta-G solvation = -178.651500 kcal Electronic energy + Delta-G solvation = -27482.528276 eV Core-core repulsion = 22973.393970 eV Total energy + Delta-G solvation = -4509.134307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.066 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.12504 -41.60329 -41.14743 -40.05363 -38.55972 -37.39039 -37.14543 -36.56061 -33.57124 -32.29558 -31.24729 -30.57336 -28.91419 -27.68542 -26.42053 -24.28320 -23.52912 -22.18395 -21.19338 -19.81828 -19.29077 -18.51123 -18.15075 -17.78970 -17.60289 -17.48600 -17.16598 -17.11140 -16.79366 -16.73620 -16.24624 -16.03142 -15.26387 -15.13045 -15.01189 -14.43232 -14.24889 -14.18768 -14.03114 -13.87148 -13.45422 -13.31933 -13.12321 -12.89697 -12.80516 -12.58426 -12.54153 -12.39930 -12.04128 -11.93319 -11.69284 -11.59177 -11.55620 -10.96676 -10.57397 -10.11873 -9.95954 -9.33083 -8.41398 -5.99398 -0.13643 -0.01701 0.96922 1.37272 1.53268 1.57462 1.65934 1.72559 1.78987 2.21754 2.31317 2.34572 2.85443 3.07409 3.13463 3.56624 3.76478 3.91916 4.02937 4.14490 4.21836 4.23637 4.31984 4.34888 4.40400 4.50828 4.53857 4.67793 4.72148 4.81339 4.90932 5.08138 5.35369 5.40245 5.56273 5.67417 6.12237 6.28949 7.01743 7.17483 7.36808 7.77025 8.65687 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.002799 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.382271 B =10002.385934 C =11500.047914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.537 6.537 5 C 0.154 3.846 6 N -0.429 5.429 7 C -0.364 4.364 8 H 0.128 0.872 9 C 0.002 3.998 10 N -0.892 5.892 11 Si 0.997 3.003 12 H -0.270 1.270 13 H -0.295 1.295 14 H -0.251 1.251 15 C 0.453 3.547 16 O -0.621 6.621 17 C 0.071 3.929 18 O -0.310 6.310 19 C 0.156 3.844 20 C -0.203 4.203 21 C -0.028 4.028 22 C -0.120 4.120 23 Cl -0.049 7.049 24 C 0.142 3.858 25 F -0.127 7.127 26 C -0.189 4.189 27 H 0.134 0.866 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.274 0.726 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 8.338 1.816 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.425 6.425 5 C 0.028 3.972 6 N -0.148 5.148 7 C -0.490 4.490 8 H 0.145 0.855 9 C -0.201 4.201 10 N -0.529 5.529 11 Si 0.821 3.179 12 H -0.195 1.195 13 H -0.221 1.221 14 H -0.175 1.175 15 C 0.243 3.757 16 O -0.508 6.508 17 C -0.006 4.006 18 O -0.222 6.222 19 C 0.109 3.891 20 C -0.222 4.222 21 C -0.046 4.046 22 C -0.148 4.148 23 Cl -0.020 7.020 24 C 0.122 3.878 25 F -0.106 7.106 26 C -0.209 4.209 27 H 0.152 0.848 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.183 0.817 36 H 0.195 0.805 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.826 8.263 2.388 9.863 hybrid contribution -0.390 0.183 -0.639 0.771 sum 4.436 8.447 1.749 9.700 Atomic orbital electron populations 1.23299 0.76141 1.04909 1.01205 1.86422 1.24140 1.33724 1.84988 1.24071 0.92670 0.80829 0.69609 1.90483 1.67364 1.37703 1.46979 1.20575 0.87106 0.85333 1.04172 1.43522 1.56679 1.08428 1.06209 1.20184 1.35397 1.11379 0.82086 0.85454 1.26147 0.94681 0.96621 1.02684 1.69962 1.23041 1.31088 1.28840 0.84852 0.77485 0.79778 0.75818 1.19543 1.22116 1.17460 1.20289 0.82942 0.88701 0.83807 1.90560 1.56255 1.70907 1.33052 1.22383 1.04432 0.92461 0.81362 1.86130 1.82105 1.23774 1.30191 1.18983 0.92634 0.83476 0.94015 1.21638 1.06019 0.94918 0.99593 1.21042 0.94062 0.94142 0.95393 1.20927 1.11336 0.88009 0.94509 1.98370 1.90999 1.15216 1.97464 1.16944 1.00688 0.90846 0.79356 1.91529 1.93907 1.85976 1.39169 1.20255 1.09086 0.94085 0.97474 0.84756 0.93206 0.93485 0.85511 0.88998 0.91611 0.88085 0.86463 0.81690 0.80489 0.83114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.68 10.57 -51.45 -0.54 -16.23 16 3 C 0.49 23.59 6.13 71.24 0.44 24.03 16 4 O -0.54 -29.59 15.76 22.00 0.35 -29.24 16 5 C 0.15 7.08 5.14 85.63 0.44 7.52 16 6 N -0.43 -20.11 2.18 -639.60 -1.39 -21.50 16 7 C -0.36 -16.09 9.14 84.04 0.77 -15.32 16 8 H 0.13 4.84 6.56 -2.91 -0.02 4.82 16 9 C 0.00 0.08 4.88 84.93 0.41 0.50 16 10 N -0.89 -43.11 9.27 21.66 0.20 -42.91 16 11 Si 1.00 34.69 29.60 68.60 2.03 36.72 16 12 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 13 H -0.29 -10.76 7.11 99.48 0.71 -10.06 16 14 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 15 C 0.45 21.12 7.49 87.66 0.66 21.78 16 16 O -0.62 -33.12 16.18 15.98 0.26 -32.86 16 17 C 0.07 2.53 3.67 71.24 0.26 2.79 16 18 O -0.31 -11.33 9.67 -73.61 -0.71 -12.04 16 19 C 0.16 4.50 6.68 22.49 0.15 4.65 16 20 C -0.20 -4.57 9.04 22.37 0.20 -4.37 16 21 C -0.03 -0.54 9.82 22.27 0.22 -0.32 16 22 C -0.12 -2.66 6.33 22.37 0.14 -2.52 16 23 Cl -0.05 -0.99 28.61 -2.72 -0.08 -1.07 16 24 C 0.14 3.57 7.27 22.38 0.16 3.74 16 25 F -0.13 -3.28 16.83 44.97 0.76 -2.52 16 26 C -0.19 -5.18 9.96 22.40 0.22 -4.96 16 27 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.13 5.72 6.39 -2.39 -0.02 5.70 16 31 H 0.09 4.01 7.61 -2.39 -0.02 3.99 16 32 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 33 H 0.10 3.41 7.61 -2.39 -0.02 3.39 16 34 H 0.12 3.39 7.22 -2.39 -0.02 3.38 16 35 H 0.17 3.15 6.30 -2.91 -0.02 3.13 16 36 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.86 346.60 7.28 -58.59 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.14 Total: 23.10 kcal Atomic # 6 Polarization: 34.69 SS G_CDS: 5.27 Total: 39.97 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -1.19 Total: -64.41 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -0.65 Total: -90.37 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -65.86 7.28 -58.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340561369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.066 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds